Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004666.1

Orthogroup ID

OG0000944

Physical Location & Seq

Genomic Coordinates Reverse (-)

41099 .. 42929

Gene Structure 1831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004666.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

atgcgatctagactcctcaaggtagtcgagctcaaccttgttgtgatcggcgtcgtggccagagcatcgccagcccccaaatccagcaacaaaacaagcatcgaagaaggagaaagaggaggaagcatctacgatcacctccggcaatatggcttacccatcggccttctccccaaaggcatcatggaatattccctcaacgattccagtggcgaattccaggtgtttctgccccagccttgcctcgccaagttcgaaaatcgggtccggtatgatttcaacgtctccaggactcacaattttggagaatccggcatctccgctcaggatctcttcctttggtttccagtgaaaggtatccgagtcgatgtgcccatctccggcctcattgacttcgatatcggcgttgtcgataagcagttctctttgtccctcagtgttttacgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

149

Amino Acids

16.57

Weight (kDa)

7.87

Isoelectric Point (pI)

44.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07460 AT3G07460 AT3G07470 AT3G07470 AT3G07470
fragaria_vesca	FvH4_2g17710 FvH4_6g00340
malus_domestica	MD04G1246600.v1.1 MD05G1158400.v1.1 MD10G1151400.v1.1 MD12G1263600.v1.1
prunus_persica	Prupe.6G362800_v2.0.a1 Prupe.8G189800_v2.0.a1
pyrus_communis	pycom04g21730 pycom05g15040 pycom10g13050 pycom12g24020
rosa_chinensis	RchiOBHm_Chr3g0447641 RchiOBHm_Chr4g0387541 RchiOBHm_Chr6g0282751
rosa_laevigata	RLG00000003107 RLG00000007670 RLG00000009314 RLG00000012873 RLG00000025981 RLG00000033948 RLG00000034677
rosa_multiflora	Rmu_co8090826.1_g000001 Rmu_sc0004666.1_g000005 Rmu_sc0011591.1_g000002 Rmu_sc0012099.1_g000002 Rmu_ssc0000189.1_g000020 Rmu_ssc0000415.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354390 Rroxscaffold_6G00425850 Rroxscaffold_7G00186090
rosa_rugosa	Rorug02G0603900 Rorug04G0119200 Rorug05G0337800 Rorug06G0148700 Rorug06G0148800 Rorug06G0148900 Rorug06G0149000
rosa_samantha	Rh1BG085500 Rh3AG003900 Rh3BG003500 Rh3CG003800 Rh3DG003800 Rh4CG231300 Rh6AG107000 Rh6AG262100 Rh6BG102200 Rh6BG265200 Rh6CG096000 Rh6CG264400 Rh6DG089800 Rh6DG257000 Rh7AG163900 Rh7BG237600 Rh7DG281300 Rh7DG332700
rosa_wichuraiana	Rw1G005660 Rw3G000290 Rw6G022660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	323
AciI	CCGC	1 cut(s)	321
AclWI	GGATC	1 cut(s)	336
AcoI	YGGCCR	1 cut(s)	57
AcsI	RAATTY	1 cut(s)	215
AcyI	GRCGYC	1 cut(s)	51
AfiI	CCNNNNNNNGG	2 cut(s)	353, 380
AgsI	TTSAA	1 cut(s)	280
AjnI	CCWGG	2 cut(s)	219, 287
AluBI	AGCT	1 cut(s)	31
AluI	AGCT	1 cut(s)	31
Alw21I	GWGCWC	1 cut(s)	33
Alw26I	GTCTC	1 cut(s)	289
AlwI	GGATC	1 cut(s)	336
AoxI	GGCC	3 cut(s)	57, 163, 382
ApoI	RAATTY	1 cut(s)	215
ArsI	GACNNNNNNTTYG	2 cut(s)	249, 281
AspS9I	GGNCC	1 cut(s)	265
AsuHPI	GGTGA	1 cut(s)	128
AsuII	TTCGAA	1 cut(s)	255
AvaII	GGWCC	1 cut(s)	265
BaeGI	GKGCMC	1 cut(s)	375
BalI	TGGCCA	1 cut(s)	59
BanII	GRGCYC	1 cut(s)	33
Bbv12I	GWGCWC	1 cut(s)	33
BccI	CCATC	2 cut(s)	167, 383
BciT130I	CCWGG	2 cut(s)	221, 289
BciVI	GTATCC	1 cut(s)	368
BcoDI	GTCTC	1 cut(s)	289
BfaI	CTAG	1 cut(s)	9
BfuI	GTATCC	1 cut(s)	368
Bme1390I	CCNGG	2 cut(s)	221, 289
Bme18I	GGWCC	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	265
BmiI	GGNNCC	1 cut(s)	266
BmrFI	CCNGG	2 cut(s)	221, 289
BmsI	GCATC	5 cut(s)	74, 108, 135, 189, 324
BpmI	CTGGAG	1 cut(s)	271
Bpu10I	CCTNAGC	1 cut(s)	324
Bpu14I	TTCGAA	1 cut(s)	255
BsaHI	GRCGYC	1 cut(s)	51
BsaWI	WCCGGW	1 cut(s)	267
Bsc4I	CCNNNNNNNGG	2 cut(s)	353, 380
Bse1I	ACTGG	2 cut(s)	207, 347
BseBI	CCWGG	2 cut(s)	221, 289
BseLI	CCNNNNNNNGG	2 cut(s)	353, 380
BseMII	CTCAG	2 cut(s)	338, 448
BseNI	ACTGG	2 cut(s)	207, 347
BseRI	GAGGAG	2 cut(s)	5, 132
BseSI	GKGCMC	1 cut(s)	375
BseYI	CCCAGC	1 cut(s)	234
BshFI	GGCC	3 cut(s)	59, 165, 384
BsiHKAI	GWGCWC	1 cut(s)	33
BsiSI	CCGG	4 cut(s)	142, 268, 312, 381
BslFI	GGGAC	1 cut(s)	415
BslI	CCNNNNNNNGG	2 cut(s)	353, 380
BsmAI	GTCTC	1 cut(s)	289
BsmBI	CGTCTC	1 cut(s)	289
BsmFI	GGGAC	1 cut(s)	415
BsnI	GGCC	3 cut(s)	59, 165, 384
Bsp119I	TTCGAA	1 cut(s)	255
Bsp1286I	GDGCHC	2 cut(s)	33, 375
Bsp143I	GATC	4 cut(s)	5, 45, 133, 328
BspACI	CCGC	1 cut(s)	321
BspANI	GGCC	3 cut(s)	59, 165, 384
BspCNI	CTCAG	2 cut(s)	337, 447
BspLI	GGNNCC	1 cut(s)	266
BspPI	GGATC	1 cut(s)	336
BspT104I	TTCGAA	1 cut(s)	255
BsrBI	CCGCTC	1 cut(s)	323
BsrI	ACTGG	2 cut(s)	207, 347
BssMI	GATC	4 cut(s)	5, 45, 133, 328
BssNI	GRCGYC	1 cut(s)	51
Bst2UI	CCWGG	2 cut(s)	221, 289
Bst6I	CTCTTC	1 cut(s)	338
BstACI	GRCGYC	1 cut(s)	51
BstBI	TTCGAA	1 cut(s)	255
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	2 cut(s)	324, 434
BstKTI	GATC	4 cut(s)	8, 48, 136, 331
BstMAI	GTCTC	1 cut(s)	289
BstMBI	GATC	4 cut(s)	5, 45, 133, 328
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstNI	CCWGG	2 cut(s)	221, 289
BstSCI	CCNGG	2 cut(s)	219, 287
BstSLI	GKGCMC	1 cut(s)	375
BstX2I	RGATCY	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	328
BsuI	GTATCC	1 cut(s)	368
BsuRI	GGCC	3 cut(s)	59, 165, 384
BtgZI	GCGATG	1 cut(s)	51
BtsIMutI	CAGTG	3 cut(s)	214, 354, 442
Cac8I	GCNNGC	1 cut(s)	72
Cfr13I	GGNCC	1 cut(s)	265
CseI	GACGC	1 cut(s)	40
CviAII	CATG	1 cut(s)	184
CviJI	RGCY	7 cut(s)	31, 59, 74, 153, 165, 238, 384
CviKI_1	RGCY	7 cut(s)	31, 59, 74, 153, 165, 238, 384
DdeI	CTNAG	2 cut(s)	324, 434
DpnI	GATC	4 cut(s)	7, 47, 135, 330
DpnII	GATC	4 cut(s)	5, 45, 133, 328
EaeI	YGGCCR	1 cut(s)	57
Eam1104I	CTCTTC	1 cut(s)	338
EarI	CTCTTC	1 cut(s)	338
Ecl136II	GAGCTC	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	33
Eco32I	GATATC	1 cut(s)	400
Eco47I	GGWCC	1 cut(s)	265
Eco53kI	GAGCTC	1 cut(s)	31
EcoICRI	GAGCTC	1 cut(s)	31
EcoRI	GAATTC	1 cut(s)	215
EcoRII	CCWGG	2 cut(s)	219, 287
EcoRV	GATATC	1 cut(s)	400
EcoT38I	GRGCYC	1 cut(s)	33
Esp3I	CGTCTC	1 cut(s)	289
FaeI	CATG	1 cut(s)	187
FaiI	YATR	3 cut(s)	150, 185, 273
FaqI	GGGAC	1 cut(s)	415
FatI	CATG	1 cut(s)	183
FriOI	GRGCYC	1 cut(s)	33
FspBI	CTAG	1 cut(s)	9
GsaI	CCCAGC	1 cut(s)	238
GsuI	CTGGAG	1 cut(s)	271
HaeIII	GGCC	3 cut(s)	59, 165, 384
HapII	CCGG	4 cut(s)	142, 268, 312, 381
HgaI	GACGC	1 cut(s)	40
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	1 cut(s)	187
HinfI	GANTC	5 cut(s)	12, 203, 292, 308, 363
HpaII	CCGG	4 cut(s)	142, 268, 312, 381
HphI	GGTGA	1 cut(s)	128
Hpy188I	TCNGA	1 cut(s)	362
Hpy188III	TCNNGA	2 cut(s)	9, 326
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	2 cut(s)	101, 176
HpyCH4IV	ACGT	1 cut(s)	282
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
HpyF3I	CTNAG	2 cut(s)	324, 434
HpySE526I	ACGT	1 cut(s)	282
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	1 cut(s)	187
Kzo9I	GATC	4 cut(s)	5, 45, 133, 328
LweI	GCATC	5 cut(s)	74, 108, 135, 189, 324
MaeI	CTAG	1 cut(s)	9
MaeII	ACGT	1 cut(s)	282
MalI	GATC	4 cut(s)	7, 47, 135, 330
MbiI	CCGCTC	1 cut(s)	323
MboI	GATC	4 cut(s)	5, 45, 133, 328
MboII	GAAGA	2 cut(s)	116, 325
MflI	RGATCY	1 cut(s)	328
MhlI	GDGCHC	2 cut(s)	33, 375
MlsI	TGGCCA	1 cut(s)	59
MluCI	AATT	2 cut(s)	215, 298
MluNI	TGGCCA	1 cut(s)	59
MlyI	GAGTC	3 cut(s)	6, 286, 372
MnlI	CCTC	8 cut(s)	26, 110, 113, 149, 206, 254, 395, 443
Mox20I	TGGCCA	1 cut(s)	59
MscI	TGGCCA	1 cut(s)	59
Msp20I	TGGCCA	1 cut(s)	59
MspI	CCGG	4 cut(s)	142, 268, 312, 381
MspR9I	CCNGG	2 cut(s)	221, 289
MvaI	CCWGG	2 cut(s)	221, 289
MwoI	GCNNNNNNNGC	1 cut(s)	71
NdeII	GATC	4 cut(s)	5, 45, 133, 328
NlaIII	CATG	1 cut(s)	187
NlaIV	GGNNCC	1 cut(s)	266
NspV	TTCGAA	1 cut(s)	255
PcsI	WCGNNNNNNNCGW	3 cut(s)	252, 402, 408
PfeI	GAWTC	2 cut(s)	203, 308
PfoI	TCCNGGA	1 cut(s)	287
PleI	GAGTC	3 cut(s)	6, 286, 371
PpsI	GAGTC	3 cut(s)	6, 286, 371
Psp124BI	GAGCTC	1 cut(s)	33
Psp6I	CCWGG	2 cut(s)	219, 287
PspFI	CCCAGC	1 cut(s)	234
PspGI	CCWGG	2 cut(s)	219, 287
PspN4I	GGNNCC	1 cut(s)	266
PspPI	GGNCC	1 cut(s)	265
PsuI	RGATCY	1 cut(s)	328
SacI	GAGCTC	1 cut(s)	33
Sau3AI	GATC	4 cut(s)	5, 45, 133, 328
Sau96I	GGNCC	1 cut(s)	265
SchI	GAGTC	3 cut(s)	6, 286, 372
ScrFI	CCNGG	2 cut(s)	221, 289
SduI	GDGCHC	2 cut(s)	33, 375
SetI	ASST	7 cut(s)	24, 33, 39, 141, 225, 285, 358
SfaNI	GCATC	5 cut(s)	74, 108, 135, 189, 324
SfuI	TTCGAA	1 cut(s)	255
SinI	GGWCC	1 cut(s)	265
SmlI	CTYRAG	1 cut(s)	17
SmoI	CTYRAG	1 cut(s)	17
Sse9I	AATT	2 cut(s)	215, 298
SsiI	CCGC	1 cut(s)	321
SspI	AATATT	1 cut(s)	191
SspMI	CTAG	1 cut(s)	9
SstI	GAGCTC	1 cut(s)	33
StyD4I	CCNGG	2 cut(s)	219, 287
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	6 cut(s)	27, 102, 255, 366, 396, 411
TasI	AATT	2 cut(s)	215, 298
TfiI	GAWTC	2 cut(s)	203, 308
TscAI	CASTG	3 cut(s)	214, 354, 442
TspRI	CASTG	3 cut(s)	214, 354, 442
VpaK11BI	GGWCC	1 cut(s)	265
XapI	RAATTY	1 cut(s)	215
XbaI	TCTAGA	1 cut(s)	8
XcmI	CCANNNNNNNNNTGG	1 cut(s)	181
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.