Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0000944

Physical Location & Seq

Genomic Coordinates Forward (+)

22739811 .. 22742212

Gene Structure 2402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g21730.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGGTTCCTTTCCAAAATCCCTAAATTCTGAAATATGGGTCTCGATCCTCTGCCTTGTCGTAGTTGCGTTCCTCCTCCCCCTCCCCGCCAGCGGAACTCCGTCGTCCAGCATCTACGACCACCTGCGGAAACAGGGCCTGCCGATTGGTCTCCTCCCCAAGGGCATCACCGACTATTCTCTCAACGCCACCACCGGAGAATTCCGAGTGTTGCTGGAGCAGCCCTGTCACGCCAAGTTCGAGAACCAGGTGCTCTACGATTTTAACGTTTCCGGCTTTCTGTCTTTCGGCCGAATCGCCAACTTATCGGGCGTGTCGGCTCAGGAGCTCTTCCTCTGGTTTCCGGTCAAGGGGATCAGAGTCGATGTGCCCAGCTCCGGCCTCATTTATTTCGATGTCGGCGTCGTTGACAAGCAGTTTTCTCTCTCCCTCTTCGAATCGCCGCCTGATTGCACCGCCGTTGACCCTTCTGATCCCAACTTCAATCCTGCCGCGTTCGAGAATGAATCACTGAATCTTGGGTATCGAGTTGGTCGGAAAAGTGAGCTGAGGGCCGATTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

188

Amino Acids

20.45

Weight (kDa)

4.97

Isoelectric Point (pI)

40.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07460 AT3G07460 AT3G07470 AT3G07470 AT3G07470
fragaria_vesca	FvH4_2g17710 FvH4_6g00340
malus_domestica	MD04G1246600.v1.1 MD05G1158400.v1.1 MD10G1151400.v1.1 MD12G1263600.v1.1
prunus_persica	Prupe.6G362800_v2.0.a1 Prupe.8G189800_v2.0.a1
pyrus_communis	pycom04g21730 pycom05g15040 pycom10g13050 pycom12g24020
rosa_chinensis	RchiOBHm_Chr3g0447641 RchiOBHm_Chr4g0387541 RchiOBHm_Chr6g0282751
rosa_laevigata	RLG00000003107 RLG00000007670 RLG00000009314 RLG00000012873 RLG00000025981 RLG00000033948 RLG00000034677
rosa_multiflora	Rmu_co8090826.1_g000001 Rmu_sc0004666.1_g000005 Rmu_sc0011591.1_g000002 Rmu_sc0012099.1_g000002 Rmu_ssc0000189.1_g000020 Rmu_ssc0000415.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354390 Rroxscaffold_6G00425850 Rroxscaffold_7G00186090
rosa_rugosa	Rorug02G0603900 Rorug04G0119200 Rorug05G0337800 Rorug06G0148700 Rorug06G0148800 Rorug06G0148900 Rorug06G0149000
rosa_samantha	Rh1BG085500 Rh3AG003900 Rh3BG003500 Rh3CG003800 Rh3DG003800 Rh4CG231300 Rh6AG107000 Rh6AG262100 Rh6BG102200 Rh6BG265200 Rh6CG096000 Rh6CG264400 Rh6DG089800 Rh6DG257000 Rh7AG163900 Rh7BG237600 Rh7DG281300 Rh7DG332700
rosa_wichuraiana	Rw1G005660 Rw3G000290 Rw6G022660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	132
Acc36I	ACCTGC	1 cut(s)	132
AccII	CGCG	1 cut(s)	494
AciI	CCGC	6 cut(s)	87, 93, 127, 443, 456, 492
AclI	AACGTT	1 cut(s)	267
AclWI	GGATC	3 cut(s)	40, 362, 467
AcoI	YGGCCR	1 cut(s)	289
AcsI	RAATTY	2 cut(s)	25, 200
AcyI	GRCGYC	1 cut(s)	402
AfiI	CCNNNNNNNGG	4 cut(s)	92, 160, 350, 377
AgsI	TTSAA	1 cut(s)	484
AjnI	CCWGG	1 cut(s)	246
AluBI	AGCT	3 cut(s)	328, 375, 547
AluI	AGCT	3 cut(s)	328, 375, 547
Alw21I	GWGCWC	2 cut(s)	255, 330
Alw26I	GTCTC	2 cut(s)	46, 155
AlwI	GGATC	3 cut(s)	40, 362, 467
AlwNI	CAGNNNCTG	1 cut(s)	139
AoxI	GGCC	4 cut(s)	136, 289, 379, 552
ApeKI	GCWGC	1 cut(s)	220
ApoI	RAATTY	2 cut(s)	25, 200
AspS9I	GGNCC	2 cut(s)	136, 552
AsuHPI	GGTGA	1 cut(s)	160
AsuII	TTCGAA	1 cut(s)	435
BaeGI	GKGCMC	1 cut(s)	372
BanII	GRGCYC	1 cut(s)	330
Bbv12I	GWGCWC	2 cut(s)	255, 330
BbvCI	CCTCAGC	1 cut(s)	548
BbvI	GCAGC	1 cut(s)	232
BceAI	ACGGC	1 cut(s)	443
BciT130I	CCWGG	1 cut(s)	248
BcoDI	GTCTC	2 cut(s)	46, 155
BfuAI	ACCTGC	1 cut(s)	132
BisI	GCNGC	3 cut(s)	221, 443, 492
BlsI	GCNGC	3 cut(s)	222, 444, 493
Bme1390I	CCNGG	1 cut(s)	248
BmgT120I	GGNCC	2 cut(s)	136, 552
BmiI	GGNNCC	1 cut(s)	7
BmrFI	CCNGG	1 cut(s)	248
BmsI	GCATC	2 cut(s)	120, 174
BpmI	CTGGAG	1 cut(s)	236
Bpu10I	CCTNAGC	2 cut(s)	321, 548
Bpu14I	TTCGAA	1 cut(s)	435
BsaHI	GRCGYC	1 cut(s)	402
BsaI	GGTCTC	2 cut(s)	46, 155
BsaJI	CCNNGG	1 cut(s)	159
BsaWI	WCCGGW	2 cut(s)	194, 343
Bsc4I	CCNNNNNNNGG	4 cut(s)	92, 160, 350, 377
BseBI	CCWGG	1 cut(s)	248
BseDI	CCNNGG	1 cut(s)	159
BseLI	CCNNNNNNNGG	4 cut(s)	92, 160, 350, 377
BseMII	CTCAG	2 cut(s)	335, 539
BseRI	GAGGAG	2 cut(s)	65, 143
BseSI	GKGCMC	1 cut(s)	372
BseX3I	CGGCCG	1 cut(s)	289
BseXI	GCAGC	1 cut(s)	232
BseYI	CCCAGC	1 cut(s)	371
Bsh1236I	CGCG	1 cut(s)	494
Bsh1285I	CGRYCG	1 cut(s)	292
BshFI	GGCC	4 cut(s)	138, 291, 381, 554
BsiEI	CGRYCG	1 cut(s)	292
BsiHKAI	GWGCWC	2 cut(s)	255, 330
BsiSI	CCGG	4 cut(s)	195, 273, 344, 378
BslI	CCNNNNNNNGG	4 cut(s)	92, 160, 350, 377
BsmAI	GTCTC	2 cut(s)	46, 155
BsnI	GGCC	4 cut(s)	138, 291, 381, 554
Bso31I	GGTCTC	2 cut(s)	46, 155
Bsp119I	TTCGAA	1 cut(s)	435
Bsp1286I	GDGCHC	3 cut(s)	255, 330, 372
Bsp143I	GATC	3 cut(s)	45, 354, 472
BspACI	CCGC	6 cut(s)	87, 93, 127, 443, 456, 492
BspANI	GGCC	4 cut(s)	138, 291, 381, 554
BspCNI	CTCAG	2 cut(s)	334, 540
BspFNI	CGCG	1 cut(s)	494
BspLI	GGNNCC	1 cut(s)	7
BspMI	ACCTGC	1 cut(s)	132
BspPI	GGATC	3 cut(s)	40, 362, 467
BspQI	GCTCTTC	1 cut(s)	335
BspT104I	TTCGAA	1 cut(s)	435
BspTNI	GGTCTC	2 cut(s)	46, 155
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	3 cut(s)	45, 354, 472
BssNI	GRCGYC	1 cut(s)	402
BssT1I	CCWWGG	1 cut(s)	159
Bst2UI	CCWGG	1 cut(s)	248
Bst6I	CTCTTC	2 cut(s)	335, 437
BstACI	GRCGYC	1 cut(s)	402
BstBI	TTCGAA	1 cut(s)	435
BstC8I	GCNNGC	2 cut(s)	91, 140
BstDEI	CTNAG	2 cut(s)	321, 548
BstENI	CCTNNNNNAGG	1 cut(s)	158
BstFNI	CGCG	1 cut(s)	494
BstKTI	GATC	3 cut(s)	48, 357, 475
BstMAI	GTCTC	2 cut(s)	46, 155
BstMBI	GATC	3 cut(s)	45, 354, 472
BstMCI	CGRYCG	1 cut(s)	292
BstMWI	GCNNNNNNNGC	1 cut(s)	220
BstNI	CCWGG	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	246
BstSLI	GKGCMC	1 cut(s)	372
BstUI	CGCG	1 cut(s)	494
BstV1I	GCAGC	1 cut(s)	232
BstZI	CGGCCG	1 cut(s)	289
BsuRI	GGCC	4 cut(s)	138, 291, 381, 554
BtsIMutI	CAGTG	1 cut(s)	509
BveI	ACCTGC	1 cut(s)	132
Cac8I	GCNNGC	2 cut(s)	91, 140
CaiI	CAGNNNCTG	1 cut(s)	139
Cfr13I	GGNCC	2 cut(s)	136, 552
CseI	GACGC	1 cut(s)	391
CsiI	ACCWGGT	1 cut(s)	246
DdeI	CTNAG	2 cut(s)	321, 548
DpnI	GATC	3 cut(s)	47, 356, 474
DpnII	GATC	3 cut(s)	45, 354, 472
EaeI	YGGCCR	1 cut(s)	289
EagI	CGGCCG	1 cut(s)	289
Eam1104I	CTCTTC	2 cut(s)	335, 437
EarI	CTCTTC	2 cut(s)	335, 437
Ecl136II	GAGCTC	1 cut(s)	328
EclXI	CGGCCG	1 cut(s)	289
Eco130I	CCWWGG	1 cut(s)	159
Eco24I	GRGCYC	1 cut(s)	330
Eco31I	GGTCTC	2 cut(s)	46, 155
Eco52I	CGGCCG	1 cut(s)	289
Eco53kI	GAGCTC	1 cut(s)	328
EcoICRI	GAGCTC	1 cut(s)	328
EcoNI	CCTNNNNNAGG	1 cut(s)	158
EcoO109I	RGGNCCY	1 cut(s)	136
EcoRI	GAATTC	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	246
EcoT14I	CCWWGG	1 cut(s)	159
EcoT38I	GRGCYC	1 cut(s)	330
ErhI	CCWWGG	1 cut(s)	159
FaiI	YATR	2 cut(s)	37, 562
FauI	CCCGC	1 cut(s)	94
Fnu4HI	GCNGC	3 cut(s)	221, 443, 492
FriOI	GRGCYC	1 cut(s)	330
Fsp4HI	GCNGC	3 cut(s)	221, 443, 492
GluI	GCNGC	3 cut(s)	221, 443, 492
GsaI	CCCAGC	1 cut(s)	375
GsuI	CTGGAG	1 cut(s)	236
HaeIII	GGCC	4 cut(s)	138, 291, 381, 554
HapII	CCGG	4 cut(s)	195, 273, 344, 378
HgaI	GACGC	1 cut(s)	391
Hin1I	GRCGYC	1 cut(s)	402
HincII	GTYRAC	2 cut(s)	409, 463
HindII	GTYRAC	2 cut(s)	409, 463
HinfI	GANTC	6 cut(s)	294, 360, 437, 506, 514, 557
HpaII	CCGG	4 cut(s)	195, 273, 344, 378
HphI	GGTGA	1 cut(s)	160
Hpy166II	GTNNAC	2 cut(s)	409, 463
Hpy188I	TCNGA	5 cut(s)	31, 206, 359, 472, 537
Hpy188III	TCNNGA	4 cut(s)	43, 241, 323, 499
Hpy8I	GTNNAC	2 cut(s)	409, 463
Hpy99I	CGWCG	2 cut(s)	106, 407
HpyAV	CCTTC	1 cut(s)	477
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	1 cut(s)	453
HpyF10VI	GCNNNNNNNGC	1 cut(s)	220
HpyF3I	CTNAG	2 cut(s)	321, 548
HpySE526I	ACGT	1 cut(s)	267
Hsp92I	GRCGYC	1 cut(s)	402
Kzo9I	GATC	3 cut(s)	45, 354, 472
LguI	GCTCTTC	1 cut(s)	335
LmnI	GCTCC	3 cut(s)	217, 325, 380
Lsp1109I	GCAGC	1 cut(s)	232
LweI	GCATC	2 cut(s)	120, 174
MabI	ACCWGGT	1 cut(s)	246
MaeII	ACGT	1 cut(s)	267
MaeIII	GTNAC	1 cut(s)	227
MalI	GATC	3 cut(s)	47, 356, 474
MboI	GATC	3 cut(s)	45, 354, 472
MboII	GAAGA	2 cut(s)	322, 424
MhlI	GDGCHC	3 cut(s)	255, 330, 372
MluCI	AATT	2 cut(s)	25, 200
MlyI	GAGTC	1 cut(s)	369
MmeI	TCCRAC	1 cut(s)	515
MnlI	CCTC	9 cut(s)	59, 83, 86, 92, 164, 344, 392, 440, 543
MseI	TTAA	1 cut(s)	264
MspA1I	CMGCKG	1 cut(s)	93
MspI	CCGG	4 cut(s)	195, 273, 344, 378
MspR9I	CCNGG	1 cut(s)	248
MvaI	CCWGG	1 cut(s)	248
MvnI	CGCG	1 cut(s)	494
MwoI	GCNNNNNNNGC	1 cut(s)	220
NdeII	GATC	3 cut(s)	45, 354, 472
NlaIV	GGNNCC	1 cut(s)	7
NmuCI	GTSAC	1 cut(s)	227
NspV	TTCGAA	1 cut(s)	435
PaqCI	CACCTGC	1 cut(s)	132
PciSI	GCTCTTC	1 cut(s)	335
PcsI	WCGNNNNNNNCGW	3 cut(s)	237, 264, 399
PfeI	GAWTC	5 cut(s)	294, 437, 506, 514, 557
PkrI	GCNGC	3 cut(s)	222, 444, 493
PleI	GAGTC	1 cut(s)	368
PpsI	GAGTC	1 cut(s)	368
Psp124BI	GAGCTC	1 cut(s)	330
Psp1406I	AACGTT	1 cut(s)	267
Psp6I	CCWGG	1 cut(s)	246
PspFI	CCCAGC	1 cut(s)	371
PspGI	CCWGG	1 cut(s)	246
PspN4I	GGNNCC	1 cut(s)	7
PspPI	GGNCC	2 cut(s)	136, 552
PstNI	CAGNNNCTG	1 cut(s)	139
SacI	GAGCTC	1 cut(s)	330
SapI	GCTCTTC	1 cut(s)	335
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	3 cut(s)	221, 443, 492
Sau3AI	GATC	3 cut(s)	45, 354, 472
Sau96I	GGNCC	2 cut(s)	136, 552
SchI	GAGTC	1 cut(s)	369
ScrFI	CCNGG	1 cut(s)	248
SduI	GDGCHC	3 cut(s)	255, 330, 372
SetI	ASST	6 cut(s)	126, 252, 270, 330, 377, 549
SexAI	ACCWGGT	1 cut(s)	246
SfaNI	GCATC	2 cut(s)	120, 174
SfuI	TTCGAA	1 cut(s)	435
Sse9I	AATT	2 cut(s)	25, 200
SsiI	CCGC	6 cut(s)	87, 93, 127, 443, 456, 492
SstI	GAGCTC	1 cut(s)	330
StyD4I	CCNGG	1 cut(s)	246
StyI	CCWWGG	1 cut(s)	159
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	7 cut(s)	44, 240, 363, 393, 435, 498, 526
TasI	AATT	2 cut(s)	25, 200
TauI	GCSGC	2 cut(s)	445, 494
TfiI	GAWTC	5 cut(s)	294, 437, 506, 514, 557
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	1 cut(s)	516
TseFI	GTSAC	1 cut(s)	227
TseI	GCWGC	1 cut(s)	220
Tsp45I	GTSAC	1 cut(s)	227
TspDTI	ATGAA	2 cut(s)	519, 549
TspGWI	ACGGA	1 cut(s)	90
TspRI	CASTG	1 cut(s)	516
XagI	CCTNNNNNAGG	1 cut(s)	158
XapI	RAATTY	2 cut(s)	25, 200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.