Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000944

Physical Location & Seq

Genomic Coordinates Reverse (-)

21013855 .. 21014331

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG237600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCATTGGGATTGCAGGGTTCAAAATCCCTCGGGGGCTTTGTTCTTCTGCTCCTCCTTGCTGCGATCGGTGCCGTGGCAAGAGCATCGCCGGCCCCAAAATCCAGTAACAAAACAAGCATCGGAGAAGGAGGAGGAGGAAGCATCTACGATCACCTCCGGCAACGGCAATATGGGTTACCCATCGGCCTCCTCCCCAAAGGCATCACGGAATATTCCCTCGACGATTCCAGCGGCGAATTCCGGGTGTTTCTGCCCCAGCCTTGCCGCGCCAAGTTCGAGAATCAGGTCCGGTACGATTTCAACGTCTCTGGGACTCTCACTTTCGGCCGAATCGCCGACTTATCCGGCGTCTCCGCTCAGGAACTCTTCCTCTGGTTTCTGGTGAAAGGTATCCGAGTCGATGTGCCCAGCTCCGGCCTCATTTACTTCAATGTCGGCGTTGTCGATAAGCAGTTCTCTTTGTCCCTCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

158

Amino Acids

16.96

Weight (kDa)

9.13

Isoelectric Point (pI)

37.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF538	PF04398	56 - 158	2e-31	Protein of unknown function, DUF538

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07460 AT3G07460 AT3G07470 AT3G07470 AT3G07470
fragaria_vesca	FvH4_2g17710 FvH4_6g00340
malus_domestica	MD04G1246600.v1.1 MD05G1158400.v1.1 MD10G1151400.v1.1 MD12G1263600.v1.1
prunus_persica	Prupe.6G362800_v2.0.a1 Prupe.8G189800_v2.0.a1
pyrus_communis	pycom04g21730 pycom05g15040 pycom10g13050 pycom12g24020
rosa_chinensis	RchiOBHm_Chr3g0447641 RchiOBHm_Chr4g0387541 RchiOBHm_Chr6g0282751
rosa_laevigata	RLG00000003107 RLG00000007670 RLG00000009314 RLG00000012873 RLG00000025981 RLG00000033948 RLG00000034677
rosa_multiflora	Rmu_co8090826.1_g000001 Rmu_sc0004666.1_g000005 Rmu_sc0011591.1_g000002 Rmu_sc0012099.1_g000002 Rmu_ssc0000189.1_g000020 Rmu_ssc0000415.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354390 Rroxscaffold_6G00425850 Rroxscaffold_7G00186090
rosa_rugosa	Rorug02G0603900 Rorug04G0119200 Rorug05G0337800 Rorug06G0148700 Rorug06G0148800 Rorug06G0148900 Rorug06G0149000
rosa_samantha	Rh1BG085500 Rh3AG003900 Rh3BG003500 Rh3CG003800 Rh3DG003800 Rh4CG231300 Rh6AG107000 Rh6AG262100 Rh6BG102200 Rh6BG265200 Rh6CG096000 Rh6CG264400 Rh6DG089800 Rh6DG257000 Rh7AG163900 Rh7BG237600 Rh7DG281300 Rh7DG332700
rosa_wichuraiana	Rw1G005660 Rw3G000290 Rw6G022660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	71
AccBSI	CCGCTC	1 cut(s)	359
AccII	CGCG	1 cut(s)	270
AciI	CCGC	3 cut(s)	234, 268, 357
AcoI	YGGCCR	1 cut(s)	328
AcsI	RAATTY	1 cut(s)	239
AcyI	GRCGYC	1 cut(s)	351
AfaI	GTAC	1 cut(s)	296
AfiI	CCNNNNNNNGG	1 cut(s)	416
AgsI	TTSAA	3 cut(s)	24, 304, 433
AluBI	AGCT	1 cut(s)	414
AluI	AGCT	1 cut(s)	414
Alw26I	GTCTC	2 cut(s)	313, 358
Ama87I	CYCGRG	1 cut(s)	32
AoxI	GGCC	4 cut(s)	93, 187, 328, 418
ApeKI	GCWGC	1 cut(s)	62
ApoI	RAATTY	1 cut(s)	239
AspLEI	GCGC	1 cut(s)	272
AspS9I	GGNCC	2 cut(s)	94, 289
AsuC2I	CCSGG	1 cut(s)	245
AsuHPI	GGTGA	2 cut(s)	146, 397
AvaI	CYCGRG	1 cut(s)	32
AvaII	GGWCC	1 cut(s)	289
BaeGI	GKGCMC	1 cut(s)	411
BanI	GGYRCC	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	49
BccI	CCATC	1 cut(s)	191
BceAI	ACGGC	2 cut(s)	59, 182
BcgI	CGANNNNNNTGC	2 cut(s)	69, 103
BciVI	GTATCC	1 cut(s)	404
BcnI	CCSGG	1 cut(s)	245
BcoDI	GTCTC	2 cut(s)	313, 358
BfaI	CTAG	1 cut(s)	475
BfuI	GTATCC	1 cut(s)	404
BisI	GCNGC	3 cut(s)	63, 235, 268
BlsI	GCNGC	3 cut(s)	64, 236, 269
Bme1390I	CCNGG	1 cut(s)	245
Bme18I	GGWCC	1 cut(s)	289
BmeT110I	CYCGRG	1 cut(s)	32
BmgT120I	GGNCC	2 cut(s)	94, 289
BmiI	GGNNCC	2 cut(s)	73, 96
BmrFI	CCNGG	1 cut(s)	245
BmsI	GCATC	4 cut(s)	95, 129, 153, 213
Bpu10I	CCTNAGC	1 cut(s)	360
BpuMI	CCSGG	1 cut(s)	245
BsaHI	GRCGYC	1 cut(s)	351
BsaJI	CCNNGG	2 cut(s)	31, 75
BsaWI	WCCGGW	1 cut(s)	291
Bsc4I	CCNNNNNNNGG	1 cut(s)	416
Bse118I	RCCGGY	1 cut(s)	91
Bse1I	ACTGG	1 cut(s)	105
BseDI	CCNNGG	2 cut(s)	31, 75
BseLI	CCNNNNNNNGG	1 cut(s)	416
BseMII	CTCAG	1 cut(s)	374
BseNI	ACTGG	1 cut(s)	105
BseRI	GAGGAG	4 cut(s)	44, 147, 150, 182
BseSI	GKGCMC	1 cut(s)	411
BseX3I	CGGCCG	1 cut(s)	328
BseXI	GCAGC	1 cut(s)	49
BseYI	CCCAGC	2 cut(s)	258, 410
Bsh1236I	CGCG	1 cut(s)	270
Bsh1285I	CGRYCG	2 cut(s)	69, 331
BshFI	GGCC	4 cut(s)	95, 189, 330, 420
BshNI	GGYRCC	1 cut(s)	71
BsiEI	CGRYCG	2 cut(s)	69, 331
BsiHKCI	CYCGRG	1 cut(s)	32
BsiSI	CCGG	6 cut(s)	92, 160, 244, 292, 348, 417
BslFI	GGGAC	2 cut(s)	328, 451
BslI	CCNNNNNNNGG	1 cut(s)	416
BsmAI	GTCTC	2 cut(s)	313, 358
BsmBI	CGTCTC	2 cut(s)	313, 358
BsmFI	GGGAC	2 cut(s)	328, 451
BsnI	GGCC	4 cut(s)	95, 189, 330, 420
BsoBI	CYCGRG	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	411
Bsp143I	GATC	2 cut(s)	66, 151
BspACI	CCGC	3 cut(s)	234, 268, 357
BspANI	GGCC	4 cut(s)	95, 189, 330, 420
BspCNI	CTCAG	1 cut(s)	373
BspFNI	CGCG	1 cut(s)	270
BspLI	GGNNCC	2 cut(s)	73, 96
BspT107I	GGYRCC	1 cut(s)	71
BsrBI	CCGCTC	1 cut(s)	359
BsrFI	RCCGGY	1 cut(s)	91
BsrI	ACTGG	1 cut(s)	105
BssAI	RCCGGY	1 cut(s)	91
BssECI	CCNNGG	2 cut(s)	31, 75
BssMI	GATC	2 cut(s)	66, 151
BssNI	GRCGYC	1 cut(s)	351
Bst6I	CTCTTC	1 cut(s)	374
BstACI	GRCGYC	1 cut(s)	351
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	1 cut(s)	360
BstDSI	CCRYGG	1 cut(s)	75
BstEII	GGTNACC	1 cut(s)	177
BstFNI	CGCG	1 cut(s)	270
BstHHI	GCGC	1 cut(s)	272
BstKTI	GATC	2 cut(s)	69, 154
BstMAI	GTCTC	2 cut(s)	313, 358
BstMBI	GATC	2 cut(s)	66, 151
BstMCI	CGRYCG	2 cut(s)	69, 331
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 92
BstPI	GGTNACC	1 cut(s)	177
BstSCI	CCNGG	1 cut(s)	243
BstSLI	GKGCMC	1 cut(s)	411
BstUI	CGCG	1 cut(s)	270
BstV1I	GCAGC	1 cut(s)	49
BstZI	CGGCCG	1 cut(s)	328
BsuI	GTATCC	1 cut(s)	404
BsuRI	GGCC	4 cut(s)	95, 189, 330, 420
BtgI	CCRYGG	1 cut(s)	75
BtgZI	GCGATG	1 cut(s)	72
Cac8I	GCNNGC	1 cut(s)	93
CfoI	GCGC	1 cut(s)	272
Cfr10I	RCCGGY	1 cut(s)	91
Cfr13I	GGNCC	2 cut(s)	94, 289
CseI	GACGC	1 cut(s)	340
Csp6I	GTAC	1 cut(s)	295
CviJI	RGCY	7 cut(s)	39, 95, 189, 262, 330, 414, 420
CviKI_1	RGCY	7 cut(s)	39, 95, 189, 262, 330, 414, 420
CviQI	GTAC	1 cut(s)	295
DdeI	CTNAG	1 cut(s)	360
DpnI	GATC	2 cut(s)	68, 153
DpnII	GATC	2 cut(s)	66, 151
EaeI	YGGCCR	1 cut(s)	328
EagI	CGGCCG	1 cut(s)	328
Eam1104I	CTCTTC	1 cut(s)	374
EarI	CTCTTC	1 cut(s)	374
EclXI	CGGCCG	1 cut(s)	328
Eco47I	GGWCC	1 cut(s)	289
Eco52I	CGGCCG	1 cut(s)	328
Eco88I	CYCGRG	1 cut(s)	32
Eco91I	GGTNACC	1 cut(s)	177
EcoO65I	GGTNACC	1 cut(s)	177
EcoRI	GAATTC	1 cut(s)	239
Esp3I	CGTCTC	2 cut(s)	313, 358
FaiI	YATR	1 cut(s)	174
FaqI	GGGAC	2 cut(s)	328, 451
Fnu4HI	GCNGC	3 cut(s)	63, 235, 268
Fsp4HI	GCNGC	3 cut(s)	63, 235, 268
FspBI	CTAG	1 cut(s)	475
GlaI	GCGC	1 cut(s)	271
GluI	GCNGC	3 cut(s)	63, 235, 268
GsaI	CCCAGC	2 cut(s)	262, 414
HaeIII	GGCC	4 cut(s)	95, 189, 330, 420
HapII	CCGG	6 cut(s)	92, 160, 244, 292, 348, 417
HgaI	GACGC	1 cut(s)	340
HhaI	GCGC	1 cut(s)	272
Hin1I	GRCGYC	1 cut(s)	351
Hin6I	GCGC	1 cut(s)	270
HinP1I	GCGC	1 cut(s)	270
HinfI	GANTC	5 cut(s)	227, 283, 316, 333, 399
HpaII	CCGG	6 cut(s)	92, 160, 244, 292, 348, 417
HphI	GGTGA	2 cut(s)	146, 397
Hpy188I	TCNGA	2 cut(s)	125, 398
Hpy188III	TCNNGA	2 cut(s)	280, 362
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	1 cut(s)	122
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	1 cut(s)	16
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 92
HpyF3I	CTNAG	1 cut(s)	360
HpySE526I	ACGT	1 cut(s)	306
Hsp92I	GRCGYC	1 cut(s)	351
HspAI	GCGC	1 cut(s)	270
KroI	GCCGGC	1 cut(s)	91
KroNI	GCCGGC	1 cut(s)	93
Kzo9I	GATC	2 cut(s)	66, 151
LmnI	GCTCC	2 cut(s)	57, 419
Lsp1109I	GCAGC	1 cut(s)	49
LweI	GCATC	4 cut(s)	95, 129, 153, 213
MaeI	CTAG	1 cut(s)	475
MaeII	ACGT	1 cut(s)	306
MaeIII	GTNAC	2 cut(s)	107, 177
MalI	GATC	2 cut(s)	68, 153
MbiI	CCGCTC	1 cut(s)	359
MboI	GATC	2 cut(s)	66, 151
MboII	GAAGA	3 cut(s)	38, 361, 463
MhlI	GDGCHC	1 cut(s)	411
MluCI	AATT	1 cut(s)	239
MlyI	GAGTC	2 cut(s)	310, 408
MroNI	GCCGGC	1 cut(s)	91
MspA1I	CMGCKG	1 cut(s)	234
MspI	CCGG	6 cut(s)	92, 160, 244, 292, 348, 417
MspR9I	CCNGG	1 cut(s)	245
MvnI	CGCG	1 cut(s)	270
MwoI	GCNNNNNNNGC	2 cut(s)	71, 92
NaeI	GCCGGC	1 cut(s)	93
NciI	CCSGG	1 cut(s)	245
NdeII	GATC	2 cut(s)	66, 151
NgoMIV	GCCGGC	1 cut(s)	91
NlaIV	GGNNCC	2 cut(s)	73, 96
PcsI	WCGNNNNNNNCGW	2 cut(s)	303, 444
PdiI	GCCGGC	1 cut(s)	93
PfeI	GAWTC	3 cut(s)	227, 283, 333
PkrI	GCNGC	3 cut(s)	64, 236, 269
Ple19I	CGATCG	1 cut(s)	69
PleI	GAGTC	2 cut(s)	310, 407
PpsI	GAGTC	2 cut(s)	310, 407
PspEI	GGTNACC	1 cut(s)	177
PspFI	CCCAGC	2 cut(s)	258, 410
PspN4I	GGNNCC	2 cut(s)	73, 96
PspPI	GGNCC	2 cut(s)	94, 289
PvuI	CGATCG	1 cut(s)	69
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
SatI	GCNGC	3 cut(s)	63, 235, 268
Sau3AI	GATC	2 cut(s)	66, 151
Sau96I	GGNCC	2 cut(s)	94, 289
SchI	GAGTC	2 cut(s)	310, 408
ScrFI	CCNGG	1 cut(s)	245
SduI	GDGCHC	1 cut(s)	411
SetI	ASST	5 cut(s)	159, 291, 309, 394, 416
SfaNI	GCATC	4 cut(s)	95, 129, 153, 213
SinI	GGWCC	1 cut(s)	289
Sse9I	AATT	1 cut(s)	239
SsiI	CCGC	3 cut(s)	234, 268, 357
SspI	AATATT	1 cut(s)	215
SspMI	CTAG	1 cut(s)	475
StyD4I	CCNGG	1 cut(s)	243
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	4 cut(s)	222, 279, 402, 447
TasI	AATT	1 cut(s)	239
TauI	GCSGC	2 cut(s)	237, 270
TfiI	GAWTC	3 cut(s)	227, 283, 333
TseI	GCWGC	1 cut(s)	62
TspGWI	ACGGA	1 cut(s)	224
VpaK11BI	GGWCC	1 cut(s)	289
XapI	RAATTY	1 cut(s)	239
XspI	CTAG	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.