Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0000944

Physical Location & Seq

Genomic Coordinates Reverse (-)

304957 .. 306812

Gene Structure 1856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G000290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGGACTGGAATTGCAGGGTCCAAAATCCCTAGTGGGCTTTGTTCTTCTGCTCCTCCTTGCTGTGATCGGCGCCGTGGCCCCCAAATCCAGCAGCAAAGCAAGCATCGGAGGAGGAGGAGGAAGCATCTACGATCACCTCCGGCAATATGGCTTGCCCATCGGCCTCCTCCCCAAAGGCATCACGGAATATTCCCTCGACGATTCCAGCGGCGAATTCCGGGTGTTTCTGCCCCAGCCTTGCCGCGCCAAGTTCGAGAATCAGGTCCGCTACGATTTCAACGTCTCCGGGACCCTCACTTTCGGCCGAATCGCCGACTTGTCCGGCGTCTCCGCTCAGGAGCTCTTCCTTTGGTTTCCGGTGAAAGGTATCCGAGTGGATGTGCCCAGCTCCGGCCTCATTTACTTCGATGTCGGCGTTGTCGACAAGCAGTTCTCTTTGTCGCTCTTCGAGTCTCCGCCCGATTGCACTGCTCTTGATCCTTCTGATCCCTCCTCCTCTTCTTCTTCTTCTTCCTCCAATTCCCCATCTGAGCTCAAGCTCAAGACTCTATCAGAAGATGTTGGGTACAAAGCTGCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

194

Amino Acids

20.56

Weight (kDa)

4.98

Isoelectric Point (pI)

49.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF538	PF04398	43 - 151	2.7e-34	Protein of unknown function, DUF538

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07460 AT3G07460 AT3G07470 AT3G07470 AT3G07470
fragaria_vesca	FvH4_2g17710 FvH4_6g00340
malus_domestica	MD04G1246600.v1.1 MD05G1158400.v1.1 MD10G1151400.v1.1 MD12G1263600.v1.1
prunus_persica	Prupe.6G362800_v2.0.a1 Prupe.8G189800_v2.0.a1
pyrus_communis	pycom04g21730 pycom05g15040 pycom10g13050 pycom12g24020
rosa_chinensis	RchiOBHm_Chr3g0447641 RchiOBHm_Chr4g0387541 RchiOBHm_Chr6g0282751
rosa_laevigata	RLG00000003107 RLG00000007670 RLG00000009314 RLG00000012873 RLG00000025981 RLG00000033948 RLG00000034677
rosa_multiflora	Rmu_co8090826.1_g000001 Rmu_sc0004666.1_g000005 Rmu_sc0011591.1_g000002 Rmu_sc0012099.1_g000002 Rmu_ssc0000189.1_g000020 Rmu_ssc0000415.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354390 Rroxscaffold_6G00425850 Rroxscaffold_7G00186090
rosa_rugosa	Rorug02G0603900 Rorug04G0119200 Rorug05G0337800 Rorug06G0148700 Rorug06G0148800 Rorug06G0148900 Rorug06G0149000
rosa_samantha	Rh1BG085500 Rh3AG003900 Rh3BG003500 Rh3CG003800 Rh3DG003800 Rh4CG231300 Rh6AG107000 Rh6AG262100 Rh6BG102200 Rh6BG265200 Rh6CG096000 Rh6CG264400 Rh6DG089800 Rh6DG257000 Rh7AG163900 Rh7BG237600 Rh7DG281300 Rh7DG332700
rosa_wichuraiana	Rw1G005660 Rw3G000290 Rw6G022660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	71
AccBSI	CCGCTC	1 cut(s)	335
AccI	GTMKAC	1 cut(s)	423
AccII	CGCG	1 cut(s)	246
AciI	CCGC	5 cut(s)	210, 244, 268, 333, 458
AclWI	GGATC	2 cut(s)	473, 482
AcoI	YGGCCR	1 cut(s)	304
AcsI	RAATTY	1 cut(s)	215
AcyI	GRCGYC	2 cut(s)	72, 327
AfaI	GTAC	1 cut(s)	569
AfiI	CCNNNNNNNGG	2 cut(s)	365, 392
AgsI	TTSAA	1 cut(s)	280
AluBI	AGCT	5 cut(s)	343, 390, 535, 541, 575
AluI	AGCT	5 cut(s)	343, 390, 535, 541, 575
Alw21I	GWGCWC	2 cut(s)	345, 537
Alw26I	GTCTC	3 cut(s)	289, 334, 459
AlwI	GGATC	2 cut(s)	473, 482
AoxI	GGCC	4 cut(s)	78, 163, 304, 394
ApeKI	GCWGC	2 cut(s)	93, 575
ApoI	RAATTY	1 cut(s)	215
AspLEI	GCGC	2 cut(s)	74, 248
AspS9I	GGNCC	4 cut(s)	20, 79, 265, 291
AsuC2I	CCSGG	2 cut(s)	221, 289
AsuHPI	GGTGA	2 cut(s)	128, 373
AvaII	GGWCC	3 cut(s)	20, 265, 291
BaeGI	GKGCMC	1 cut(s)	387
BanI	GGYRCC	1 cut(s)	71
BanII	GRGCYC	2 cut(s)	345, 537
Bbv12I	GWGCWC	2 cut(s)	345, 537
BbvI	GCAGC	2 cut(s)	105, 562
BccI	CCATC	2 cut(s)	167, 535
BceAI	ACGGC	1 cut(s)	59
BcgI	CGANNNNNNTGC	2 cut(s)	452, 486
BciVI	GTATCC	1 cut(s)	380
BcnI	CCSGG	2 cut(s)	221, 289
BcoDI	GTCTC	3 cut(s)	289, 334, 459
BfaI	CTAG	1 cut(s)	32
BfoI	RGCGCY	1 cut(s)	75
BfuI	GTATCC	1 cut(s)	380
BisI	GCNGC	4 cut(s)	94, 211, 244, 576
BlsI	GCNGC	4 cut(s)	95, 212, 245, 577
Bme1390I	CCNGG	2 cut(s)	221, 289
Bme18I	GGWCC	3 cut(s)	20, 265, 291
BmgT120I	GGNCC	4 cut(s)	20, 79, 265, 291
BmiI	GGNNCC	5 cut(s)	21, 73, 81, 292, 293
BmrFI	CCNGG	2 cut(s)	221, 289
BmsI	GCATC	3 cut(s)	114, 135, 189
Bpu10I	CCTNAGC	1 cut(s)	336
BpuEI	CTTGAG	2 cut(s)	521, 527
BpuMI	CCSGG	2 cut(s)	221, 289
BsaHI	GRCGYC	2 cut(s)	72, 327
BsaJI	CCNNGG	1 cut(s)	75
BsaWI	WCCGGW	1 cut(s)	358
Bsc4I	CCNNNNNNNGG	2 cut(s)	365, 392
Bse1I	ACTGG	1 cut(s)	12
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	1 cut(s)	385
BseLI	CCNNNNNNNGG	2 cut(s)	365, 392
BseMII	CTCAG	2 cut(s)	350, 522
BseNI	ACTGG	1 cut(s)	12
BseRI	GAGGAG	7 cut(s)	44, 126, 129, 132, 158, 484, 487
BseSI	GKGCMC	1 cut(s)	387
BseX3I	CGGCCG	1 cut(s)	304
BseXI	GCAGC	2 cut(s)	105, 562
BseYI	CCCAGC	2 cut(s)	234, 386
Bsh1236I	CGCG	1 cut(s)	246
Bsh1285I	CGRYCG	1 cut(s)	307
BshFI	GGCC	4 cut(s)	80, 165, 306, 396
BshNI	GGYRCC	1 cut(s)	71
BsiEI	CGRYCG	1 cut(s)	307
BsiHKAI	GWGCWC	2 cut(s)	345, 537
BsiSI	CCGG	6 cut(s)	142, 220, 288, 324, 359, 393
BslFI	GGGAC	2 cut(s)	18, 304
BslI	CCNNNNNNNGG	2 cut(s)	365, 392
BsmAI	GTCTC	3 cut(s)	289, 334, 459
BsmBI	CGTCTC	2 cut(s)	289, 334
BsmFI	GGGAC	2 cut(s)	18, 304
BsnI	GGCC	4 cut(s)	80, 165, 306, 396
Bsp1286I	GDGCHC	3 cut(s)	345, 387, 537
Bsp143I	GATC	4 cut(s)	66, 133, 478, 487
BspACI	CCGC	5 cut(s)	210, 244, 268, 333, 458
BspANI	GGCC	4 cut(s)	80, 165, 306, 396
BspCNI	CTCAG	2 cut(s)	349, 523
BspFNI	CGCG	1 cut(s)	246
BspLI	GGNNCC	5 cut(s)	21, 73, 81, 292, 293
BspPI	GGATC	2 cut(s)	473, 482
BspQI	GCTCTTC	2 cut(s)	350, 452
BspT107I	GGYRCC	1 cut(s)	71
BsrBI	CCGCTC	1 cut(s)	335
BsrI	ACTGG	1 cut(s)	12
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	4 cut(s)	66, 133, 478, 487
BssNI	GRCGYC	2 cut(s)	72, 327
Bst6I	CTCTTC	3 cut(s)	350, 452, 505
BstACI	GRCGYC	2 cut(s)	72, 327
BstC8I	GCNNGC	2 cut(s)	103, 155
BstDEI	CTNAG	2 cut(s)	336, 531
BstDSI	CCRYGG	1 cut(s)	75
BstF5I	GGATG	1 cut(s)	385
BstFNI	CGCG	1 cut(s)	246
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	2 cut(s)	74, 248
BstKTI	GATC	4 cut(s)	69, 136, 481, 490
BstMAI	GTCTC	3 cut(s)	289, 334, 459
BstMBI	GATC	4 cut(s)	66, 133, 478, 487
BstMCI	CGRYCG	1 cut(s)	307
BstMWI	GCNNNNNNNGC	1 cut(s)	102
BstSCI	CCNGG	2 cut(s)	219, 287
BstSLI	GKGCMC	1 cut(s)	387
BstUI	CGCG	1 cut(s)	246
BstV1I	GCAGC	2 cut(s)	105, 562
BstZI	CGGCCG	1 cut(s)	304
BsuI	GTATCC	1 cut(s)	380
BsuRI	GGCC	4 cut(s)	80, 165, 306, 396
BtgI	CCRYGG	1 cut(s)	75
BtsCI	GGATG	1 cut(s)	385
BtsI	GCAGTG	1 cut(s)	468
BtsIMutI	CAGTG	1 cut(s)	468
Cac8I	GCNNGC	2 cut(s)	103, 155
CfoI	GCGC	2 cut(s)	74, 248
Cfr13I	GGNCC	4 cut(s)	20, 79, 265, 291
CseI	GACGC	1 cut(s)	316
Csp6I	GTAC	1 cut(s)	568
CviQI	GTAC	1 cut(s)	568
DdeI	CTNAG	2 cut(s)	336, 531
DinI	GGCGCC	1 cut(s)	73
DpnI	GATC	4 cut(s)	68, 135, 480, 489
DpnII	GATC	4 cut(s)	66, 133, 478, 487
EaeI	YGGCCR	1 cut(s)	304
EagI	CGGCCG	1 cut(s)	304
Eam1104I	CTCTTC	3 cut(s)	350, 452, 505
EarI	CTCTTC	3 cut(s)	350, 452, 505
EciI	GGCGGA	1 cut(s)	447
Ecl136II	GAGCTC	2 cut(s)	343, 535
EclXI	CGGCCG	1 cut(s)	304
Eco24I	GRGCYC	2 cut(s)	345, 537
Eco47I	GGWCC	3 cut(s)	20, 265, 291
Eco52I	CGGCCG	1 cut(s)	304
Eco53kI	GAGCTC	2 cut(s)	343, 535
EcoICRI	GAGCTC	2 cut(s)	343, 535
EcoO109I	RGGNCCY	1 cut(s)	291
EcoRI	GAATTC	1 cut(s)	215
EcoT38I	GRGCYC	2 cut(s)	345, 537
EgeI	GGCGCC	1 cut(s)	73
EheI	GGCGCC	1 cut(s)	73
Esp3I	CGTCTC	2 cut(s)	289, 334
FaiI	YATR	2 cut(s)	150, 583
FaqI	GGGAC	2 cut(s)	18, 304
FblI	GTMKAC	1 cut(s)	423
Fnu4HI	GCNGC	4 cut(s)	94, 211, 244, 576
FokI	GGATG	1 cut(s)	392
FriOI	GRGCYC	2 cut(s)	345, 537
Fsp4HI	GCNGC	4 cut(s)	94, 211, 244, 576
FspBI	CTAG	1 cut(s)	32
GlaI	GCGC	2 cut(s)	73, 247
GluI	GCNGC	4 cut(s)	94, 211, 244, 576
GsaI	CCCAGC	2 cut(s)	238, 390
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	4 cut(s)	80, 165, 306, 396
HapII	CCGG	6 cut(s)	142, 220, 288, 324, 359, 393
HgaI	GACGC	1 cut(s)	316
HhaI	GCGC	2 cut(s)	74, 248
Hin1I	GRCGYC	2 cut(s)	72, 327
Hin6I	GCGC	2 cut(s)	72, 246
HinP1I	GCGC	2 cut(s)	72, 246
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HinfI	GANTC	5 cut(s)	203, 259, 309, 452, 547
HpaII	CCGG	6 cut(s)	142, 220, 288, 324, 359, 393
HphI	GGTGA	2 cut(s)	128, 373
Hpy166II	GTNNAC	1 cut(s)	424
Hpy188I	TCNGA	5 cut(s)	110, 374, 487, 532, 556
Hpy188III	TCNNGA	4 cut(s)	256, 338, 476, 544
Hpy8I	GTNNAC	1 cut(s)	424
Hpy99I	CGWCG	1 cut(s)	203
HpyAV	CCTTC	1 cut(s)	492
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	2 cut(s)	16, 468
HpyF10VI	GCNNNNNNNGC	1 cut(s)	102
HpyF3I	CTNAG	2 cut(s)	336, 531
HpySE526I	ACGT	1 cut(s)	282
Hsp92I	GRCGYC	2 cut(s)	72, 327
HspAI	GCGC	2 cut(s)	72, 246
KasI	GGCGCC	1 cut(s)	71
KflI	GGGWCCC	1 cut(s)	291
Kzo9I	GATC	4 cut(s)	66, 133, 478, 487
LguI	GCTCTTC	2 cut(s)	350, 452
LmnI	GCTCC	3 cut(s)	57, 340, 395
Lsp1109I	GCAGC	2 cut(s)	105, 562
LweI	GCATC	3 cut(s)	114, 135, 189
MaeI	CTAG	1 cut(s)	32
MaeII	ACGT	1 cut(s)	282
MalI	GATC	4 cut(s)	68, 135, 480, 489
MbiI	CCGCTC	1 cut(s)	335
MboI	GATC	4 cut(s)	66, 133, 478, 487
MboII	GAAGA	9 cut(s)	38, 337, 439, 492, 495, 498, 501, 504, 569
MhlI	GDGCHC	3 cut(s)	345, 387, 537
MluCI	AATT	3 cut(s)	11, 215, 520
Mly113I	GGCGCC	1 cut(s)	72
MlyI	GAGTC	2 cut(s)	461, 541
MspA1I	CMGCKG	1 cut(s)	210
MspI	CCGG	6 cut(s)	142, 220, 288, 324, 359, 393
MspR9I	CCNGG	2 cut(s)	221, 289
MvnI	CGCG	1 cut(s)	246
MwoI	GCNNNNNNNGC	1 cut(s)	102
NarI	GGCGCC	1 cut(s)	72
NciI	CCSGG	2 cut(s)	221, 289
NdeII	GATC	4 cut(s)	66, 133, 478, 487
NlaIV	GGNNCC	5 cut(s)	21, 73, 81, 292, 293
PciSI	GCTCTTC	2 cut(s)	350, 452
PcsI	WCGNNNNNNNCGW	3 cut(s)	279, 414, 420
PfeI	GAWTC	3 cut(s)	203, 259, 309
PfoI	TCCNGGA	1 cut(s)	287
PkrI	GCNGC	4 cut(s)	95, 212, 245, 577
PleI	GAGTC	2 cut(s)	460, 541
PluTI	GGCGCC	1 cut(s)	75
PpsI	GAGTC	2 cut(s)	460, 541
PpuMI	RGGWCCY	1 cut(s)	291
Psp124BI	GAGCTC	2 cut(s)	345, 537
Psp5II	RGGWCCY	1 cut(s)	291
PspFI	CCCAGC	2 cut(s)	234, 386
PspN4I	GGNNCC	5 cut(s)	21, 73, 81, 292, 293
PspPI	GGNCC	4 cut(s)	20, 79, 265, 291
PspPPI	RGGWCCY	1 cut(s)	291
RsaI	GTAC	1 cut(s)	569
RsaNI	GTAC	1 cut(s)	568
SacI	GAGCTC	2 cut(s)	345, 537
SalI	GTCGAC	1 cut(s)	422
SapI	GCTCTTC	2 cut(s)	350, 452
SatI	GCNGC	4 cut(s)	94, 211, 244, 576
Sau3AI	GATC	4 cut(s)	66, 133, 478, 487
Sau96I	GGNCC	4 cut(s)	20, 79, 265, 291
SchI	GAGTC	2 cut(s)	461, 541
ScrFI	CCNGG	2 cut(s)	221, 289
SduI	GDGCHC	3 cut(s)	345, 387, 537
SetI	ASST	9 cut(s)	141, 267, 285, 345, 370, 392, 537, 543, 577
SfaNI	GCATC	3 cut(s)	114, 135, 189
SfoI	GGCGCC	1 cut(s)	73
SinI	GGWCC	3 cut(s)	20, 265, 291
SmlI	CTYRAG	2 cut(s)	536, 542
SmoI	CTYRAG	2 cut(s)	536, 542
Sse9I	AATT	3 cut(s)	11, 215, 520
SsiI	CCGC	5 cut(s)	210, 244, 268, 333, 458
SspDI	GGCGCC	1 cut(s)	71
SspI	AATATT	1 cut(s)	191
SspMI	CTAG	1 cut(s)	32
SstI	GAGCTC	2 cut(s)	345, 537
StyD4I	CCNGG	2 cut(s)	219, 287
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	5 cut(s)	198, 255, 408, 423, 450
TasI	AATT	3 cut(s)	11, 215, 520
TauI	GCSGC	2 cut(s)	213, 246
TfiI	GAWTC	3 cut(s)	203, 259, 309
TscAI	CASTG	1 cut(s)	475
TseI	GCWGC	2 cut(s)	93, 575
TspDTI	ATGAA	1 cut(s)	570
TspGWI	ACGGA	1 cut(s)	200
TspRI	CASTG	1 cut(s)	475
VpaK11BI	GGWCC	3 cut(s)	20, 265, 291
XapI	RAATTY	1 cut(s)	215
XmiI	GTMKAC	1 cut(s)	423
XspI	CTAG	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.