Rh7AG163900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000944
Physical Location & Seq
Forward (+)
13949307 .. 13949891
585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG163900.1

Sequence Viewer

Length: 585 bp
ATGGTCTTTTCAGTTTTTTACTCTGAGCACCCAGCTTTCTCTCTCTGGGCACCTAGCGTGTTCTCTCTCTCTCTCTCTGGCCATGGGCACCCATCTCTCTTCCCCTCTCCCAATCCCGATCACCTCTGCAATTCCAACATTACCATCAATCTCGTCTCCCAATCCCTGCGCCCATCTCTCAAACTCAAAAGTCAAAACAAAAAATGGCATTGGGATTGCAGGGTTCAAAATCCCTCGGGGGCTTTGTTCCTCTGCTTCTCCTTGCTGCGATCGGCGCGGTGGCCGGAGCATCGCCGACCCCAAAATCCAGTAACAAAACAAGCATCGGAGAAGGAGGAGGAGGAACCATCTACGATCACCTCCAGTAATATGGGTTACCCATCGGCCTCCTCCCCAAAGGCATCACGGAATATTCCCTCGACGATTCCAGCGGTGAATTTCGGGTGTTTCTGCCCCAGCCTTGCCGCTCCAAGTTCGAGAATCAGGTCCGGTACGATTTCAACGTCTCTGGGACTCTCACTTTCGGCCGAATCGCCAACTTATCCAGTGTCTCCGCTCAGGAACTCTTCCTCTGGTTTCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

21.23

Weight (kDa)

9.46

Isoelectric Point (pI)

80.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 49, 87
AccBSI CCGCTC 2 cut(s) 467, 556
AccII CGCG 1 cut(s) 277
AciI CCGC 4 cut(s) 277, 431, 465, 554
AcoI YGGCCR 3 cut(s) 79, 281, 525
AcsI RAATTY 1 cut(s) 436
AfaI GTAC 1 cut(s) 493
AgsI TTSAA 2 cut(s) 227, 501
AluBI AGCT 1 cut(s) 35
AluI AGCT 1 cut(s) 35
Alw21I GWGCWC 1 cut(s) 30
Alw26I GTCTC 3 cut(s) 160, 510, 555
Ama87I CYCGRG 1 cut(s) 235
AoxI GGCC 4 cut(s) 79, 281, 384, 525
ApeKI GCWGC 1 cut(s) 265
ApoI RAATTY 1 cut(s) 436
AspLEI GCGC 2 cut(s) 171, 277
AspS9I GGNCC 1 cut(s) 486
AsuHPI GGTGA 3 cut(s) 113, 349, 445
AvaI CYCGRG 1 cut(s) 235
AvaII GGWCC 1 cut(s) 486
BaeGI GKGCMC 2 cut(s) 52, 90
BalI TGGCCA 1 cut(s) 81
BanI GGYRCC 2 cut(s) 49, 87
Bbv12I GWGCWC 1 cut(s) 30
BbvI GCAGC 1 cut(s) 252
BccI CCATC 5 cut(s) 100, 152, 181, 355, 388
BcoDI GTCTC 3 cut(s) 160, 510, 555
BfaI CTAG 1 cut(s) 54
BisI GCNGC 2 cut(s) 266, 465
BlsI GCNGC 2 cut(s) 267, 466
Bme18I GGWCC 1 cut(s) 486
BmeT110I CYCGRG 1 cut(s) 235
BmgT120I GGNCC 1 cut(s) 486
BmiI GGNNCC 3 cut(s) 51, 89, 345
BmsI GCATC 3 cut(s) 298, 332, 410
BpmI CTGGAG 1 cut(s) 346
Bpu10I CCTNAGC 1 cut(s) 557
BsaJI CCNNGG 2 cut(s) 82, 234
BsaWI WCCGGW 1 cut(s) 488
Bse1I ACTGG 3 cut(s) 308, 363, 545
BseDI CCNNGG 2 cut(s) 82, 234
BseMII CTCAG 2 cut(s) 15, 571
BseNI ACTGG 3 cut(s) 308, 363, 545
BseRI GAGGAG 3 cut(s) 350, 353, 379
BseSI GKGCMC 2 cut(s) 52, 90
BseX3I CGGCCG 1 cut(s) 525
BseXI GCAGC 1 cut(s) 252
BseYI CCCAGC 2 cut(s) 31, 455
Bsh1236I CGCG 1 cut(s) 277
Bsh1285I CGRYCG 2 cut(s) 272, 528
BshFI GGCC 4 cut(s) 81, 283, 386, 527
BshNI GGYRCC 2 cut(s) 49, 87
BsiEI CGRYCG 2 cut(s) 272, 528
BsiHKAI GWGCWC 1 cut(s) 30
BsiHKCI CYCGRG 1 cut(s) 235
BsiSI CCGG 2 cut(s) 284, 489
BslFI GGGAC 1 cut(s) 525
BsmAI GTCTC 3 cut(s) 160, 510, 555
BsmBI CGTCTC 2 cut(s) 160, 510
BsmFI GGGAC 1 cut(s) 525
BsnI GGCC 4 cut(s) 81, 283, 386, 527
BsoBI CYCGRG 1 cut(s) 235
Bsp1286I GDGCHC 3 cut(s) 30, 52, 90
Bsp143I GATC 3 cut(s) 118, 269, 354
Bsp19I CCATGG 1 cut(s) 82
BspACI CCGC 4 cut(s) 277, 431, 465, 554
BspANI GGCC 4 cut(s) 81, 283, 386, 527
BspCNI CTCAG 2 cut(s) 16, 570
BspFNI CGCG 1 cut(s) 277
BspLI GGNNCC 3 cut(s) 51, 89, 345
BspT107I GGYRCC 2 cut(s) 49, 87
BsrBI CCGCTC 2 cut(s) 467, 556
BsrI ACTGG 3 cut(s) 308, 363, 545
BssECI CCNNGG 2 cut(s) 82, 234
BssMI GATC 3 cut(s) 118, 269, 354
BssT1I CCWWGG 1 cut(s) 82
Bst6I CTCTTC 2 cut(s) 104, 571
BstDEI CTNAG 2 cut(s) 24, 557
BstDSI CCRYGG 1 cut(s) 82
BstEII GGTNACC 1 cut(s) 374
BstFNI CGCG 1 cut(s) 277
BstHHI GCGC 2 cut(s) 171, 277
BstKTI GATC 3 cut(s) 121, 272, 357
BstMAI GTCTC 3 cut(s) 160, 510, 555
BstMBI GATC 3 cut(s) 118, 269, 354
BstMCI CGRYCG 2 cut(s) 272, 528
BstMWI GCNNNNNNNGC 1 cut(s) 274
BstPI GGTNACC 1 cut(s) 374
BstSLI GKGCMC 2 cut(s) 52, 90
BstUI CGCG 1 cut(s) 277
BstV1I GCAGC 1 cut(s) 252
BstXI CCANNNNNNTGG 1 cut(s) 370
BstZI CGGCCG 1 cut(s) 525
BsuRI GGCC 4 cut(s) 81, 283, 386, 527
BtgI CCRYGG 1 cut(s) 82
BtgZI GCGATG 1 cut(s) 275
BtsIMutI CAGTG 1 cut(s) 552
CfoI GCGC 2 cut(s) 171, 277
Cfr13I GGNCC 1 cut(s) 486
Csp6I GTAC 1 cut(s) 492
CviAII CATG 1 cut(s) 83
CviJI RGCY 7 cut(s) 35, 81, 242, 283, 386, 459, 527
CviKI_1 RGCY 7 cut(s) 35, 81, 242, 283, 386, 459, 527
CviQI GTAC 1 cut(s) 492
DdeI CTNAG 2 cut(s) 24, 557
DpnI GATC 3 cut(s) 120, 271, 356
DpnII GATC 3 cut(s) 118, 269, 354
EaeI YGGCCR 3 cut(s) 79, 281, 525
EagI CGGCCG 1 cut(s) 525
Eam1104I CTCTTC 2 cut(s) 104, 571
EarI CTCTTC 2 cut(s) 104, 571
EclXI CGGCCG 1 cut(s) 525
Eco130I CCWWGG 1 cut(s) 82
Eco47I GGWCC 1 cut(s) 486
Eco52I CGGCCG 1 cut(s) 525
Eco88I CYCGRG 1 cut(s) 235
Eco91I GGTNACC 1 cut(s) 374
EcoO65I GGTNACC 1 cut(s) 374
EcoT14I CCWWGG 1 cut(s) 82
ErhI CCWWGG 1 cut(s) 82
Esp3I CGTCTC 2 cut(s) 160, 510
FaeI CATG 1 cut(s) 86
FaiI YATR 2 cut(s) 84, 371
FaqI GGGAC 1 cut(s) 525
FatI CATG 1 cut(s) 82
Fnu4HI GCNGC 2 cut(s) 266, 465
Fsp4HI GCNGC 2 cut(s) 266, 465
FspBI CTAG 1 cut(s) 54
GlaI GCGC 2 cut(s) 170, 276
GluI GCNGC 2 cut(s) 266, 465
GsaI CCCAGC 2 cut(s) 35, 459
GsuI CTGGAG 1 cut(s) 346
HaeIII GGCC 4 cut(s) 81, 283, 386, 527
HapII CCGG 2 cut(s) 284, 489
HhaI GCGC 2 cut(s) 171, 277
Hin1II CATG 1 cut(s) 86
Hin6I GCGC 2 cut(s) 169, 275
HinP1I GCGC 2 cut(s) 169, 275
HinfI GANTC 4 cut(s) 424, 480, 513, 530
HpaII CCGG 2 cut(s) 284, 489
HphI GGTGA 3 cut(s) 113, 349, 445
Hpy188I TCNGA 2 cut(s) 25, 328
Hpy188III TCNNGA 3 cut(s) 116, 477, 559
Hpy99I CGWCG 1 cut(s) 424
HpyAV CCTTC 1 cut(s) 325
HpyCH4IV ACGT 1 cut(s) 503
HpyCH4V TGCA 2 cut(s) 129, 219
HpyF10VI GCNNNNNNNGC 1 cut(s) 274
HpyF3I CTNAG 2 cut(s) 24, 557
HpySE526I ACGT 1 cut(s) 503
Hsp92II CATG 1 cut(s) 86
HspAI GCGC 2 cut(s) 169, 275
Kzo9I GATC 3 cut(s) 118, 269, 354
LmnI GCTCC 2 cut(s) 286, 472
Lsp1109I GCAGC 1 cut(s) 252
LweI GCATC 3 cut(s) 298, 332, 410
MaeI CTAG 1 cut(s) 54
MaeII ACGT 1 cut(s) 503
MaeIII GTNAC 2 cut(s) 310, 374
MalI GATC 3 cut(s) 120, 271, 356
MbiI CCGCTC 2 cut(s) 467, 556
MboI GATC 3 cut(s) 118, 269, 354
MboII GAAGA 2 cut(s) 91, 558
MhlI GDGCHC 3 cut(s) 30, 52, 90
MlsI TGGCCA 1 cut(s) 81
MluCI AATT 2 cut(s) 130, 436
MluNI TGGCCA 1 cut(s) 81
MlyI GAGTC 1 cut(s) 507
MmeI TCCRAC 1 cut(s) 159
Mox20I TGGCCA 1 cut(s) 81
MscI TGGCCA 1 cut(s) 81
Msp20I TGGCCA 1 cut(s) 81
MspA1I CMGCKG 1 cut(s) 431
MspI CCGG 2 cut(s) 284, 489
MvnI CGCG 1 cut(s) 277
MwoI GCNNNNNNNGC 1 cut(s) 274
NcoI CCATGG 1 cut(s) 82
NdeII GATC 3 cut(s) 118, 269, 354
NlaIII CATG 1 cut(s) 86
NlaIV GGNNCC 3 cut(s) 51, 89, 345
PcsI WCGNNNNNNNCGW 1 cut(s) 500
PfeI GAWTC 3 cut(s) 424, 480, 530
PkrI GCNGC 2 cut(s) 267, 466
Ple19I CGATCG 1 cut(s) 272
PleI GAGTC 1 cut(s) 507
PpsI GAGTC 1 cut(s) 507
PspEI GGTNACC 1 cut(s) 374
PspFI CCCAGC 2 cut(s) 31, 455
PspN4I GGNNCC 3 cut(s) 51, 89, 345
PspPI GGNCC 1 cut(s) 486
PvuI CGATCG 1 cut(s) 272
RsaI GTAC 1 cut(s) 493
RsaNI GTAC 1 cut(s) 492
SatI GCNGC 2 cut(s) 266, 465
Sau3AI GATC 3 cut(s) 118, 269, 354
Sau96I GGNCC 1 cut(s) 486
SchI GAGTC 1 cut(s) 507
SduI GDGCHC 3 cut(s) 30, 52, 90
SetI ASST 6 cut(s) 37, 55, 126, 362, 488, 506
SfaNI GCATC 3 cut(s) 298, 332, 410
SinI GGWCC 1 cut(s) 486
Sse9I AATT 2 cut(s) 130, 436
SsiI CCGC 4 cut(s) 277, 431, 465, 554
SspI AATATT 1 cut(s) 412
SspMI CTAG 1 cut(s) 54
StyI CCWWGG 1 cut(s) 82
TaiI ACGT 1 cut(s) 506
TaqI TCGA 2 cut(s) 419, 476
TasI AATT 2 cut(s) 130, 436
TauI GCSGC 1 cut(s) 467
TfiI GAWTC 3 cut(s) 424, 480, 530
TscAI CASTG 1 cut(s) 552
TseI GCWGC 1 cut(s) 265
TspGWI ACGGA 1 cut(s) 421
TspRI CASTG 1 cut(s) 552
VpaK11BI GGWCC 1 cut(s) 486
XapI RAATTY 1 cut(s) 436
XspI CTAG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.