Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0000944

Physical Location & Seq

Genomic Coordinates Forward (+)

28752398 .. 28754153

Gene Structure 1756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1158400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGCTGCAGCTGCTACACTTCATGTTGTGCTTCCTCCTCTCATGGATCACGTGCTCAAGTTCGAAGCCAACGTCGATGTACGACGTTCTGTGTGCCCACGGGCTTCCGATGGGGCTGCTGCCGAAAGGGGTTGTCGACTTCGAAATCGACGACGCCGGCAGGTTTACGGTCCACCTGGATCAGGCCTGCAATGCCAAGTTCGAGAGCGAGTTGCATTACGACAGAAACGTTTCGGGGACGTTGAGTTTCGGGCAGATCAGATCCTTGTCGGGTATTTCGGCCCAGGAGCTGTTCCTCTGGTTCCCGGTTAAGGGTATCCGGGTCGACGTCCCCAGCTCCGGCATCATCTACTTCGATGTCGGGGTTGTTTATAAGCAGTTCTCGCTGTCGCTTTTTGAAACGCCCCCGGAATGCACGGCTGCCTCTGGCGGCGTTGAAGCCGTTGGGGCGGTGTACAAGAGTGAATCGGGGAGATTGCGGTCTAAGCTCCTTTTCGATCATGTTGGGAGGGATTTTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

174

Amino Acids

19.08

Weight (kDa)

5.67

Isoelectric Point (pI)

43.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF538	PF04398	27 - 133	9e-32	Protein of unknown function, DUF538

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07460 AT3G07460 AT3G07470 AT3G07470 AT3G07470
fragaria_vesca	FvH4_2g17710 FvH4_6g00340
malus_domestica	MD04G1246600.v1.1 MD05G1158400.v1.1 MD10G1151400.v1.1 MD12G1263600.v1.1
prunus_persica	Prupe.6G362800_v2.0.a1 Prupe.8G189800_v2.0.a1
pyrus_communis	pycom04g21730 pycom05g15040 pycom10g13050 pycom12g24020
rosa_chinensis	RchiOBHm_Chr3g0447641 RchiOBHm_Chr4g0387541 RchiOBHm_Chr6g0282751
rosa_laevigata	RLG00000003107 RLG00000007670 RLG00000009314 RLG00000012873 RLG00000025981 RLG00000033948 RLG00000034677
rosa_multiflora	Rmu_co8090826.1_g000001 Rmu_sc0004666.1_g000005 Rmu_sc0011591.1_g000002 Rmu_sc0012099.1_g000002 Rmu_ssc0000189.1_g000020 Rmu_ssc0000415.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354390 Rroxscaffold_6G00425850 Rroxscaffold_7G00186090
rosa_rugosa	Rorug02G0603900 Rorug04G0119200 Rorug05G0337800 Rorug06G0148700 Rorug06G0148800 Rorug06G0148900 Rorug06G0149000
rosa_samantha	Rh1BG085500 Rh3AG003900 Rh3BG003500 Rh3CG003800 Rh3DG003800 Rh4CG231300 Rh6AG107000 Rh6AG262100 Rh6BG102200 Rh6BG265200 Rh6CG096000 Rh6CG264400 Rh6DG089800 Rh6DG257000 Rh7AG163900 Rh7BG237600 Rh7DG281300 Rh7DG332700
rosa_wichuraiana	Rw1G005660 Rw3G000290 Rw6G022660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	372
AatII	GACGTC	1 cut(s)	330
Acc36I	ACCTGC	1 cut(s)	150
AccI	GTMKAC	2 cut(s)	135, 324
AciI	CCGC	3 cut(s)	429, 449, 478
AclI	AACGTT	1 cut(s)	228
AclWI	GGATC	3 cut(s)	53, 186, 255
AcvI	CACGTG	1 cut(s)	51
AcyI	GRCGYC	2 cut(s)	153, 327
AfaI	GTAC	2 cut(s)	80, 455
AfiI	CCNNNNNNNGG	4 cut(s)	181, 310, 311, 338
AgsI	TTSAA	2 cut(s)	398, 437
AjnI	CCWGG	2 cut(s)	174, 282
AluBI	AGCT	4 cut(s)	10, 289, 336, 487
AluI	AGCT	4 cut(s)	10, 289, 336, 487
Alw21I	GWGCWC	1 cut(s)	56
AlwI	GGATC	3 cut(s)	53, 186, 255
AlwNI	CAGNNNCTG	1 cut(s)	289
AoxI	GGCC	2 cut(s)	183, 279
ApeKI	GCWGC	6 cut(s)	4, 7, 10, 115, 118, 419
ArsI	GACNNNNNNTTYG	2 cut(s)	56, 88
Asp700I	GAANNNNTTC	1 cut(s)	229
AspS9I	GGNCC	2 cut(s)	169, 280
AsuC2I	CCSGG	3 cut(s)	305, 320, 407
AsuII	TTCGAA	2 cut(s)	62, 141
AvaII	GGWCC	1 cut(s)	169
BaeGI	GKGCMC	1 cut(s)	97
BbrPI	CACGTG	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	56
BbvI	GCAGC	4 cut(s)	19, 102, 105, 406
BccI	CCATC	1 cut(s)	103
BceAI	ACGGC	2 cut(s)	425, 432
BcgI	CGANNNNNNTGC	2 cut(s)	97, 131
BciT130I	CCWGG	2 cut(s)	176, 284
BciVI	GTATCC	1 cut(s)	326
BcnI	CCSGG	3 cut(s)	305, 320, 407
BfmI	CTRYAG	1 cut(s)	5
BfuAI	ACCTGC	1 cut(s)	150
BfuI	GTATCC	1 cut(s)	326
BglI	GCCNNNNNGGC	1 cut(s)	446
BisI	GCNGC	7 cut(s)	5, 8, 11, 116, 119, 420, 430
BlsI	GCNGC	7 cut(s)	6, 9, 12, 117, 120, 421, 431
Bme1390I	CCNGG	5 cut(s)	176, 284, 305, 320, 407
Bme18I	GGWCC	1 cut(s)	169
BmgT120I	GGNCC	2 cut(s)	169, 280
BmiI	GGNNCC	1 cut(s)	302
BmrFI	CCNGG	5 cut(s)	176, 284, 305, 320, 407
BmsI	GCATC	1 cut(s)	351
Bpu14I	TTCGAA	2 cut(s)	62, 141
BpuEI	CTTGAG	1 cut(s)	40
BpuMI	CCSGG	3 cut(s)	305, 320, 407
BsaAI	YACGTR	1 cut(s)	51
BsaHI	GRCGYC	2 cut(s)	153, 327
BsaJI	CCNNGG	3 cut(s)	97, 282, 405
Bsc4I	CCNNNNNNNGG	4 cut(s)	181, 310, 311, 338
Bse118I	RCCGGY	1 cut(s)	155
Bse3DI	GCAATG	1 cut(s)	196
BseBI	CCWGG	2 cut(s)	176, 284
BseDI	CCNNGG	3 cut(s)	97, 282, 405
BseLI	CCNNNNNNNGG	4 cut(s)	181, 310, 311, 338
BseMI	GCAATG	1 cut(s)	196
BseRI	GAGGAG	1 cut(s)	26
BseSI	GKGCMC	1 cut(s)	97
BseXI	GCAGC	4 cut(s)	19, 102, 105, 406
BseYI	CCCAGC	1 cut(s)	332
BshFI	GGCC	2 cut(s)	185, 281
BsiHKAI	GWGCWC	1 cut(s)	56
BsiSI	CCGG	5 cut(s)	156, 305, 319, 339, 407
BslFI	GGGAC	2 cut(s)	250, 314
BslI	CCNNNNNNNGG	4 cut(s)	181, 310, 311, 338
BsmFI	GGGAC	2 cut(s)	250, 314
BsmI	GAATGC	1 cut(s)	416
BsnI	GGCC	2 cut(s)	185, 281
Bsp119I	TTCGAA	2 cut(s)	62, 141
Bsp1286I	GDGCHC	2 cut(s)	56, 97
Bsp1407I	TGTACA	1 cut(s)	453
Bsp143I	GATC	5 cut(s)	45, 178, 255, 260, 496
BspACI	CCGC	3 cut(s)	429, 449, 478
BspANI	GGCC	2 cut(s)	185, 281
BspLI	GGNNCC	1 cut(s)	302
BspMAI	CTGCAG	1 cut(s)	9
BspMI	ACCTGC	1 cut(s)	150
BspPI	GGATC	3 cut(s)	53, 186, 255
BspT104I	TTCGAA	2 cut(s)	62, 141
BsrDI	GCAATG	1 cut(s)	196
BsrFI	RCCGGY	1 cut(s)	155
BsrGI	TGTACA	1 cut(s)	453
BssAI	RCCGGY	1 cut(s)	155
BssECI	CCNNGG	3 cut(s)	97, 282, 405
BssMI	GATC	5 cut(s)	45, 178, 255, 260, 496
BssNI	GRCGYC	2 cut(s)	153, 327
Bst2UI	CCWGG	2 cut(s)	176, 284
Bst4CI	ACNGT	1 cut(s)	169
BstACI	GRCGYC	2 cut(s)	153, 327
BstAUI	TGTACA	1 cut(s)	453
BstBAI	YACGTR	1 cut(s)	51
BstBI	TTCGAA	2 cut(s)	62, 141
BstC8I	GCNNGC	2 cut(s)	157, 187
BstDEI	CTNAG	1 cut(s)	483
BstDSI	CCRYGG	1 cut(s)	97
BstENI	CCTNNNNNAGG	1 cut(s)	179
BstKTI	GATC	5 cut(s)	48, 181, 258, 263, 499
BstMBI	GATC	5 cut(s)	45, 178, 255, 260, 496
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 191, 382, 446, 484
BstNI	CCWGG	2 cut(s)	176, 284
BstSCI	CCNGG	5 cut(s)	174, 282, 303, 318, 405
BstSFI	CTRYAG	1 cut(s)	5
BstSLI	GKGCMC	1 cut(s)	97
BstV1I	GCAGC	4 cut(s)	19, 102, 105, 406
BstX2I	RGATCY	1 cut(s)	260
BstYI	RGATCY	1 cut(s)	260
BsuI	GTATCC	1 cut(s)	326
BsuRI	GGCC	2 cut(s)	185, 281
BtgI	CCRYGG	1 cut(s)	97
BveI	ACCTGC	1 cut(s)	150
Cac8I	GCNNGC	2 cut(s)	157, 187
CaiI	CAGNNNCTG	1 cut(s)	289
Cfr10I	RCCGGY	1 cut(s)	155
Cfr13I	GGNCC	2 cut(s)	169, 280
CseI	GACGC	1 cut(s)	161
Csp6I	GTAC	2 cut(s)	79, 454
CviAII	CATG	3 cut(s)	22, 42, 500
CviQI	GTAC	2 cut(s)	79, 454
DdeI	CTNAG	1 cut(s)	483
DpnI	GATC	5 cut(s)	47, 180, 257, 262, 498
DpnII	GATC	5 cut(s)	45, 178, 255, 260, 496
Eco147I	AGGCCT	1 cut(s)	185
Eco47I	GGWCC	1 cut(s)	169
Eco72I	CACGTG	1 cut(s)	51
EcoNI	CCTNNNNNAGG	1 cut(s)	179
EcoRII	CCWGG	2 cut(s)	174, 282
FaeI	CATG	3 cut(s)	25, 45, 503
FaiI	YATR	4 cut(s)	23, 43, 372, 501
FaqI	GGGAC	2 cut(s)	250, 314
FatI	CATG	3 cut(s)	21, 41, 499
FblI	GTMKAC	2 cut(s)	135, 324
Fnu4HI	GCNGC	7 cut(s)	5, 8, 11, 116, 119, 420, 430
Fsp4HI	GCNGC	7 cut(s)	5, 8, 11, 116, 119, 420, 430
GluI	GCNGC	7 cut(s)	5, 8, 11, 116, 119, 420, 430
GsaI	CCCAGC	1 cut(s)	336
HaeIII	GGCC	2 cut(s)	185, 281
HapII	CCGG	5 cut(s)	156, 305, 319, 339, 407
HgaI	GACGC	1 cut(s)	161
Hin1I	GRCGYC	2 cut(s)	153, 327
Hin1II	CATG	3 cut(s)	25, 45, 503
HincII	GTYRAC	2 cut(s)	136, 325
HindII	GTYRAC	2 cut(s)	136, 325
HinfI	GANTC	1 cut(s)	464
HpaII	CCGG	5 cut(s)	156, 305, 319, 339, 407
Hpy166II	GTNNAC	5 cut(s)	136, 165, 172, 325, 454
Hpy188I	TCNGA	2 cut(s)	108, 260
Hpy188III	TCNNGA	1 cut(s)	202
Hpy8I	GTNNAC	5 cut(s)	136, 165, 172, 325, 454
Hpy99I	CGWCG	5 cut(s)	76, 86, 152, 155, 329
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4IV	ACGT	6 cut(s)	50, 71, 84, 228, 239, 327
HpyCH4V	TGCA	4 cut(s)	7, 189, 214, 414
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 191, 382, 446, 484
HpyF3I	CTNAG	1 cut(s)	483
HpySE526I	ACGT	6 cut(s)	50, 71, 84, 228, 239, 327
Hsp92I	GRCGYC	2 cut(s)	153, 327
Hsp92II	CATG	3 cut(s)	25, 45, 503
KroI	GCCGGC	1 cut(s)	155
KroNI	GCCGGC	1 cut(s)	157
Kzo9I	GATC	5 cut(s)	45, 178, 255, 260, 496
LmnI	GCTCC	3 cut(s)	286, 341, 492
Lsp1109I	GCAGC	4 cut(s)	19, 102, 105, 406
LweI	GCATC	1 cut(s)	351
MaeII	ACGT	6 cut(s)	50, 71, 84, 228, 239, 327
MalI	GATC	5 cut(s)	47, 180, 257, 262, 498
MboI	GATC	5 cut(s)	45, 178, 255, 260, 496
MflI	RGATCY	1 cut(s)	260
MhlI	GDGCHC	2 cut(s)	56, 97
MnlI	CCTC	5 cut(s)	44, 47, 305, 433, 501
MroNI	GCCGGC	1 cut(s)	155
MroXI	GAANNNNTTC	1 cut(s)	229
MseI	TTAA	1 cut(s)	309
MspA1I	CMGCKG	1 cut(s)	10
MspI	CCGG	5 cut(s)	156, 305, 319, 339, 407
MspR9I	CCNGG	5 cut(s)	176, 284, 305, 320, 407
Mva1269I	GAATGC	1 cut(s)	416
MvaI	CCWGG	2 cut(s)	176, 284
MwoI	GCNNNNNNNGC	5 cut(s)	10, 191, 382, 446, 484
NaeI	GCCGGC	1 cut(s)	157
NciI	CCSGG	3 cut(s)	305, 320, 407
NdeII	GATC	5 cut(s)	45, 178, 255, 260, 496
NgoMIV	GCCGGC	1 cut(s)	155
NlaIII	CATG	3 cut(s)	25, 45, 503
NlaIV	GGNNCC	1 cut(s)	302
NspV	TTCGAA	2 cut(s)	62, 141
PceI	AGGCCT	1 cut(s)	185
PcsI	WCGNNNNNNNCGW	3 cut(s)	68, 147, 225
PctI	GAATGC	1 cut(s)	416
PdiI	GCCGGC	1 cut(s)	157
PdmI	GAANNNNTTC	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	464
PkrI	GCNGC	7 cut(s)	6, 9, 12, 117, 120, 421, 431
PmaCI	CACGTG	1 cut(s)	51
PmlI	CACGTG	1 cut(s)	51
Ppu21I	YACGTR	1 cut(s)	51
PsiI	TTATAA	1 cut(s)	372
Psp1406I	AACGTT	1 cut(s)	228
Psp6I	CCWGG	2 cut(s)	174, 282
PspCI	CACGTG	1 cut(s)	51
PspFI	CCCAGC	1 cut(s)	332
PspGI	CCWGG	2 cut(s)	174, 282
PspN4I	GGNNCC	1 cut(s)	302
PspPI	GGNCC	2 cut(s)	169, 280
PstI	CTGCAG	1 cut(s)	9
PstNI	CAGNNNCTG	1 cut(s)	289
PsuI	RGATCY	1 cut(s)	260
PvuII	CAGCTG	1 cut(s)	10
RsaI	GTAC	2 cut(s)	80, 455
RsaNI	GTAC	2 cut(s)	79, 454
SalI	GTCGAC	2 cut(s)	134, 323
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	7 cut(s)	5, 8, 11, 116, 119, 420, 430
Sau3AI	GATC	5 cut(s)	45, 178, 255, 260, 496
Sau96I	GGNCC	2 cut(s)	169, 280
ScrFI	CCNGG	5 cut(s)	176, 284, 305, 320, 407
SduI	GDGCHC	2 cut(s)	56, 97
SfaNI	GCATC	1 cut(s)	351
SfcI	CTRYAG	1 cut(s)	5
SfuI	TTCGAA	2 cut(s)	62, 141
SinI	GGWCC	1 cut(s)	169
SmlI	CTYRAG	1 cut(s)	55
SmoI	CTYRAG	1 cut(s)	55
SseBI	AGGCCT	1 cut(s)	185
SsiI	CCGC	3 cut(s)	429, 449, 478
StuI	AGGCCT	1 cut(s)	185
StyD4I	CCNGG	5 cut(s)	174, 282, 303, 318, 405
TaaI	ACNGT	1 cut(s)	169
TaiI	ACGT	6 cut(s)	53, 74, 87, 231, 242, 330
TaqI	TCGA	9 cut(s)	62, 74, 135, 141, 147, 201, 324, 354, 495
TatI	WGTACW	1 cut(s)	453
TauI	GCSGC	1 cut(s)	432
TfiI	GAWTC	1 cut(s)	464
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TseI	GCWGC	6 cut(s)	4, 7, 10, 115, 118, 419
TspDTI	ATGAA	1 cut(s)	10
VpaK11BI	GGWCC	1 cut(s)	169
XagI	CCTNNNNNAGG	1 cut(s)	179
XmiI	GTMKAC	2 cut(s)	135, 324
XmnI	GAANNNNTTC	1 cut(s)	229
ZraI	GACGTC	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.