Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000944

Physical Location & Seq

Genomic Coordinates Reverse (-)

19680286 .. 19681077

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007670

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGCACCGGGATTGCAGGGTTCAAAATCCCTCAGGGGCTTTATTCTTCTGCTCCTCCTTACTGCGATCGGCGTCGTGGCCGGAGCACCGCTGGCCCCAAAATCCAGTTACAAAACAAGCATCGGAGAAGGAGGAGGAGGAAGCATCTACGATCACCTCCGGCAATATGGGTTACCCATCGGCCTCCTCCCCAAAGGCATCACAGAATATTCCCTCGACGATTCCAACGGCGAATTCCGGGTGTTTCTGCCCCAGCCTTGCCGCGCCAAGTTCGAGAATCAGGTCCGGTACGATTTCAACATCTCTGGGACTCTCACTTTCTGCCAAATCGCCGACTTATCTGGCGTCTCCACTCAGGAACTCTTCCTCTGGTTTCCGGTGAAAGAGTCTCCGCCCGATTGCACTGCTCTTGATCCTTCTGATCCCTCCTCTCCTTCTTCTTCTTCCAATTCCCCAACTGAGCTCAAGCTCAAGGTAGATTGTGATTCTGATTCCAATTCCAATTCTCAATTCGATTCCGTTGCTTTGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

178

Amino Acids

18.9

Weight (kDa)

4.67

Isoelectric Point (pI)

55.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF538	PF04398	49 - 129	2.2e-24	Protein of unknown function, DUF538

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000944)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07460 AT3G07460 AT3G07470 AT3G07470 AT3G07470
fragaria_vesca	FvH4_2g17710 FvH4_6g00340
malus_domestica	MD04G1246600.v1.1 MD05G1158400.v1.1 MD10G1151400.v1.1 MD12G1263600.v1.1
prunus_persica	Prupe.6G362800_v2.0.a1 Prupe.8G189800_v2.0.a1
pyrus_communis	pycom04g21730 pycom05g15040 pycom10g13050 pycom12g24020
rosa_chinensis	RchiOBHm_Chr3g0447641 RchiOBHm_Chr4g0387541 RchiOBHm_Chr6g0282751
rosa_laevigata	RLG00000003107 RLG00000007670 RLG00000009314 RLG00000012873 RLG00000025981 RLG00000033948 RLG00000034677
rosa_multiflora	Rmu_co8090826.1_g000001 Rmu_sc0004666.1_g000005 Rmu_sc0011591.1_g000002 Rmu_sc0012099.1_g000002 Rmu_ssc0000189.1_g000020 Rmu_ssc0000415.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354390 Rroxscaffold_6G00425850 Rroxscaffold_7G00186090
rosa_rugosa	Rorug02G0603900 Rorug04G0119200 Rorug05G0337800 Rorug06G0148700 Rorug06G0148800 Rorug06G0148900 Rorug06G0149000
rosa_samantha	Rh1BG085500 Rh3AG003900 Rh3BG003500 Rh3CG003800 Rh3DG003800 Rh4CG231300 Rh6AG107000 Rh6AG262100 Rh6BG102200 Rh6BG265200 Rh6CG096000 Rh6CG264400 Rh6DG089800 Rh6DG257000 Rh7AG163900 Rh7BG237600 Rh7DG281300 Rh7DG332700
rosa_wichuraiana	Rw1G005660 Rw3G000290 Rw6G022660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccII	CGCG	1 cut(s)	264
AciI	CCGC	3 cut(s)	89, 262, 392
AclWI	GGATC	2 cut(s)	407, 416
AcoI	YGGCCR	1 cut(s)	78
AcsI	RAATTY	1 cut(s)	233
AcyI	GRCGYC	2 cut(s)	72, 345
AfaI	GTAC	1 cut(s)	290
AgsI	TTSAA	2 cut(s)	24, 298
AjuI	GAANNNNNNNTTGG	4 cut(s)	218, 250, 494, 526
AluBI	AGCT	2 cut(s)	463, 469
AluI	AGCT	2 cut(s)	463, 469
Alw21I	GWGCWC	2 cut(s)	88, 465
Alw26I	GTCTC	2 cut(s)	352, 393
AlwI	GGATC	2 cut(s)	407, 416
AoxI	GGCC	3 cut(s)	78, 93, 181
ApoI	RAATTY	1 cut(s)	233
AspLEI	GCGC	1 cut(s)	266
AspS9I	GGNCC	2 cut(s)	94, 283
AsuC2I	CCSGG	2 cut(s)	9, 239
AsuHPI	GGTGA	2 cut(s)	146, 391
AvaII	GGWCC	1 cut(s)	283
AxyI	CCTNAGG	1 cut(s)	32
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	465
Bbv12I	GWGCWC	2 cut(s)	88, 465
BccI	CCATC	1 cut(s)	185
BceAI	ACGGC	1 cut(s)	244
BcgI	CGANNNNNNTGC	3 cut(s)	386, 420, 503
BcnI	CCSGG	2 cut(s)	9, 239
BcoDI	GTCTC	2 cut(s)	352, 393
BisI	GCNGC	1 cut(s)	262
BlsI	GCNGC	1 cut(s)	263
Bme1390I	CCNGG	2 cut(s)	9, 239
Bme18I	GGWCC	1 cut(s)	283
BmgT120I	GGNCC	2 cut(s)	94, 283
BmiI	GGNNCC	2 cut(s)	6, 96
BmrFI	CCNGG	2 cut(s)	9, 239
BmsI	GCATC	3 cut(s)	129, 153, 207
BpuEI	CTTGAG	2 cut(s)	449, 455
BpuMI	CCSGG	2 cut(s)	9, 239
BsaHI	GRCGYC	2 cut(s)	72, 345
BsaWI	WCCGGW	2 cut(s)	285, 376
Bse1I	ACTGG	1 cut(s)	105
Bse21I	CCTNAGG	1 cut(s)	32
BseMII	CTCAG	3 cut(s)	46, 368, 450
BseNI	ACTGG	1 cut(s)	105
BseRI	GAGGAG	5 cut(s)	44, 147, 150, 176, 418
BseYI	CCCAGC	1 cut(s)	252
Bsh1236I	CGCG	1 cut(s)	264
Bsh1285I	CGRYCG	1 cut(s)	69
BshFI	GGCC	3 cut(s)	80, 95, 183
BshNI	GGYRCC	1 cut(s)	4
BsiEI	CGRYCG	1 cut(s)	69
BsiHKAI	GWGCWC	2 cut(s)	88, 465
BsiSI	CCGG	6 cut(s)	8, 81, 160, 238, 286, 377
BslFI	GGGAC	1 cut(s)	322
BsmAI	GTCTC	2 cut(s)	352, 393
BsmBI	CGTCTC	1 cut(s)	352
BsmFI	GGGAC	1 cut(s)	322
BsnI	GGCC	3 cut(s)	80, 95, 183
Bsp1286I	GDGCHC	2 cut(s)	88, 465
Bsp143I	GATC	4 cut(s)	66, 151, 412, 421
BspACI	CCGC	3 cut(s)	89, 262, 392
BspANI	GGCC	3 cut(s)	80, 95, 183
BspCNI	CTCAG	3 cut(s)	45, 367, 451
BspFNI	CGCG	1 cut(s)	264
BspLI	GGNNCC	2 cut(s)	6, 96
BspPI	GGATC	2 cut(s)	407, 416
BspT107I	GGYRCC	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	105
BssMI	GATC	4 cut(s)	66, 151, 412, 421
BssNI	GRCGYC	2 cut(s)	72, 345
Bst6I	CTCTTC	1 cut(s)	368
BstACI	GRCGYC	2 cut(s)	72, 345
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	3 cut(s)	32, 354, 459
BstEII	GGTNACC	1 cut(s)	171
BstFNI	CGCG	1 cut(s)	264
BstHHI	GCGC	1 cut(s)	266
BstKTI	GATC	4 cut(s)	69, 154, 415, 424
BstMAI	GTCTC	2 cut(s)	352, 393
BstMBI	GATC	4 cut(s)	66, 151, 412, 421
BstMCI	CGRYCG	1 cut(s)	69
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstPI	GGTNACC	1 cut(s)	171
BstSCI	CCNGG	2 cut(s)	7, 237
BstUI	CGCG	1 cut(s)	264
Bsu36I	CCTNAGG	1 cut(s)	32
BsuRI	GGCC	3 cut(s)	80, 95, 183
BtsI	GCAGTG	1 cut(s)	402
BtsIMutI	CAGTG	1 cut(s)	402
Cac8I	GCNNGC	1 cut(s)	93
CfoI	GCGC	1 cut(s)	266
Cfr13I	GGNCC	2 cut(s)	94, 283
CseI	GACGC	2 cut(s)	61, 334
Csp6I	GTAC	1 cut(s)	289
CviJI	RGCY	7 cut(s)	39, 80, 95, 183, 256, 463, 469
CviKI_1	RGCY	7 cut(s)	39, 80, 95, 183, 256, 463, 469
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	3 cut(s)	32, 354, 459
DpnI	GATC	4 cut(s)	68, 153, 414, 423
DpnII	GATC	4 cut(s)	66, 151, 412, 421
EaeI	YGGCCR	1 cut(s)	78
Eam1104I	CTCTTC	1 cut(s)	368
EarI	CTCTTC	1 cut(s)	368
EciI	GGCGGA	1 cut(s)	381
Ecl136II	GAGCTC	1 cut(s)	463
Eco24I	GRGCYC	1 cut(s)	465
Eco47I	GGWCC	1 cut(s)	283
Eco53kI	GAGCTC	1 cut(s)	463
Eco81I	CCTNAGG	1 cut(s)	32
Eco91I	GGTNACC	1 cut(s)	171
EcoICRI	GAGCTC	1 cut(s)	463
EcoO65I	GGTNACC	1 cut(s)	171
EcoRI	GAATTC	1 cut(s)	233
EcoT38I	GRGCYC	1 cut(s)	465
Esp3I	CGTCTC	1 cut(s)	352
FaiI	YATR	1 cut(s)	168
FaqI	GGGAC	1 cut(s)	322
Fnu4HI	GCNGC	1 cut(s)	262
FriOI	GRGCYC	1 cut(s)	465
Fsp4HI	GCNGC	1 cut(s)	262
GlaI	GCGC	1 cut(s)	265
GluI	GCNGC	1 cut(s)	262
GsaI	CCCAGC	1 cut(s)	256
HaeIII	GGCC	3 cut(s)	80, 95, 183
HapII	CCGG	6 cut(s)	8, 81, 160, 238, 286, 377
HgaI	GACGC	2 cut(s)	61, 334
HhaI	GCGC	1 cut(s)	266
Hin1I	GRCGYC	2 cut(s)	72, 345
Hin6I	GCGC	1 cut(s)	264
HinP1I	GCGC	1 cut(s)	264
HinfI	GANTC	7 cut(s)	221, 277, 310, 386, 485, 491, 515
HpaII	CCGG	6 cut(s)	8, 81, 160, 238, 286, 377
HphI	GGTGA	2 cut(s)	146, 391
Hpy188I	TCNGA	3 cut(s)	125, 421, 490
Hpy188III	TCNNGA	3 cut(s)	274, 356, 410
Hpy99I	CGWCG	2 cut(s)	77, 221
HpyAV	CCTTC	3 cut(s)	122, 426, 444
HpyCH4V	TGCA	2 cut(s)	16, 402
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpyF3I	CTNAG	3 cut(s)	32, 354, 459
Hsp92I	GRCGYC	2 cut(s)	72, 345
HspAI	GCGC	1 cut(s)	264
Kzo9I	GATC	4 cut(s)	66, 151, 412, 421
LmnI	GCTCC	2 cut(s)	57, 83
LweI	GCATC	3 cut(s)	129, 153, 207
MaeIII	GTNAC	2 cut(s)	107, 171
MalI	GATC	4 cut(s)	68, 153, 414, 423
MboI	GATC	4 cut(s)	66, 151, 412, 421
MboII	GAAGA	5 cut(s)	38, 355, 429, 432, 435
MhlI	GDGCHC	2 cut(s)	88, 465
MluCI	AATT	5 cut(s)	233, 448, 496, 502, 509
MlyI	GAGTC	2 cut(s)	304, 395
MmeI	TCCRAC	1 cut(s)	249
MspA1I	CMGCKG	1 cut(s)	91
MspI	CCGG	6 cut(s)	8, 81, 160, 238, 286, 377
MspR9I	CCNGG	2 cut(s)	9, 239
MvnI	CGCG	1 cut(s)	264
MwoI	GCNNNNNNNGC	1 cut(s)	92
NciI	CCSGG	2 cut(s)	9, 239
NdeII	GATC	4 cut(s)	66, 151, 412, 421
NlaIV	GGNNCC	2 cut(s)	6, 96
PfeI	GAWTC	5 cut(s)	221, 277, 485, 491, 515
PkrI	GCNGC	1 cut(s)	263
Ple19I	CGATCG	1 cut(s)	69
PleI	GAGTC	2 cut(s)	304, 394
PpsI	GAGTC	2 cut(s)	304, 394
Psp124BI	GAGCTC	1 cut(s)	465
PspEI	GGTNACC	1 cut(s)	171
PspFI	CCCAGC	1 cut(s)	252
PspN4I	GGNNCC	2 cut(s)	6, 96
PspPI	GGNCC	2 cut(s)	94, 283
PvuI	CGATCG	1 cut(s)	69
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
SacI	GAGCTC	1 cut(s)	465
SatI	GCNGC	1 cut(s)	262
Sau3AI	GATC	4 cut(s)	66, 151, 412, 421
Sau96I	GGNCC	2 cut(s)	94, 283
SchI	GAGTC	2 cut(s)	304, 395
ScrFI	CCNGG	2 cut(s)	9, 239
SduI	GDGCHC	2 cut(s)	88, 465
SetI	ASST	5 cut(s)	159, 285, 465, 471, 477
SfaNI	GCATC	3 cut(s)	129, 153, 207
SinI	GGWCC	1 cut(s)	283
SmlI	CTYRAG	2 cut(s)	464, 470
SmoI	CTYRAG	2 cut(s)	464, 470
Sse9I	AATT	5 cut(s)	233, 448, 496, 502, 509
SsiI	CCGC	3 cut(s)	89, 262, 392
SspI	AATATT	1 cut(s)	209
SstI	GAGCTC	1 cut(s)	465
StyD4I	CCNGG	2 cut(s)	7, 237
TaqI	TCGA	3 cut(s)	216, 273, 513
TasI	AATT	5 cut(s)	233, 448, 496, 502, 509
TauI	GCSGC	1 cut(s)	264
TfiI	GAWTC	5 cut(s)	221, 277, 485, 491, 515
TscAI	CASTG	1 cut(s)	409
TspGWI	ACGGA	1 cut(s)	508
TspRI	CASTG	1 cut(s)	409
VpaK11BI	GGWCC	1 cut(s)	283
XapI	RAATTY	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.