Protein of unknown function, DUF538
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Transpos_assoc | PF13963 | 3 - 76 | 2e-18 | Transposase-associated domain |
| Transposase_21 | PF02992 | 277 - 488 | 8.7e-93 | Transposase family tnp2 |
| Transposase_24 | PF03004 | 809 - 932 | 2.5e-17 | Plant transposase (Ptta/En/Spm family) |
| DUF8039 | PF26133 | 1012 - 1096 | 2.1e-13 | Domain of unknown function (DUF8039) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 1105, 2651 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 665, 1229, 1409 |
| AccI | GTMKAC | 2 cut(s) | 968, 3001 |
| AccIII | TCCGGA | 1 cut(s) | 1241 |
| AciI | CCGC | 3 cut(s) | 1367, 2494, 2625 |
| AclWI | GGATC | 7 cut(s) | 188, 201, 899, 2207, 2214, 2261, 2274 |
| AcoI | YGGCCR | 2 cut(s) | 887, 983 |
| AcuI | CTGAAG | 8 cut(s) | 120, 1341, 1518, 1866, 1995, 2091, 2598, 3111 |
| AfaI | GTAC | 5 cut(s) | 406, 974, 1157, 2510, 3121 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 665, 1229, 1256, 1409 |
| AflIII | ACRYGT | 1 cut(s) | 1292 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1314 |
| AhlI | ACTAGT | 1 cut(s) | 1802 |
| AjnI | CCWGG | 2 cut(s) | 1063, 1140 |
| Alw21I | GWGCWC | 5 cut(s) | 58, 174, 1744, 2553, 3049 |
| Alw26I | GTCTC | 6 cut(s) | 263, 335, 835, 1046, 2005, 2308 |
| Alw44I | GTGCAC | 1 cut(s) | 3045 |
| AlwI | GGATC | 7 cut(s) | 188, 201, 899, 2207, 2214, 2261, 2274 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 646 |
| Ama87I | CYCGRG | 1 cut(s) | 2799 |
| Aor13HI | TCCGGA | 1 cut(s) | 1241 |
| AoxI | GGCC | 7 cut(s) | 887, 983, 1247, 1418, 2074, 2913, 3266 |
| ApaLI | GTGCAC | 1 cut(s) | 3045 |
| ApeKI | GCWGC | 3 cut(s) | 16, 640, 1751 |
| AspLEI | GCGC | 1 cut(s) | 2614 |
| AspS9I | GGNCC | 7 cut(s) | 1067, 1206, 2045, 2453, 2747, 2926, 3267 |
| AsuC2I | CCSGG | 1 cut(s) | 1080 |
| AsuHPI | GGTGA | 4 cut(s) | 236, 1448, 1589, 3251 |
| AsuII | TTCGAA | 1 cut(s) | 812 |
| AvaI | CYCGRG | 1 cut(s) | 2799 |
| AvaII | GGWCC | 6 cut(s) | 1067, 1206, 2045, 2453, 2747, 2926 |
| BaeGI | GKGCMC | 1 cut(s) | 3049 |
| BalI | TGGCCA | 2 cut(s) | 889, 985 |
| BamHI | GGATCC | 2 cut(s) | 193, 2266 |
| BanI | GGYRCC | 2 cut(s) | 1105, 2651 |
| BanII | GRGCYC | 1 cut(s) | 58 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2492, 2524 |
| BauI | CACGAG | 1 cut(s) | 2757 |
| Bbv12I | GWGCWC | 5 cut(s) | 58, 174, 1744, 2553, 3049 |
| BbvI | GCAGC | 3 cut(s) | 3, 652, 1738 |
| BceAI | ACGGC | 1 cut(s) | 489 |
| BciT130I | CCWGG | 2 cut(s) | 1065, 1142 |
| BcnI | CCSGG | 1 cut(s) | 1080 |
| BcoDI | GTCTC | 6 cut(s) | 263, 335, 835, 1046, 2005, 2308 |
| BcuI | ACTAGT | 1 cut(s) | 1802 |
| BfaI | CTAG | 5 cut(s) | 345, 501, 563, 1745, 1803 |
| BfmI | CTRYAG | 3 cut(s) | 1905, 2022, 3246 |
| BglII | AGATCT | 3 cut(s) | 253, 1425, 3099 |
| BisI | GCNGC | 3 cut(s) | 17, 641, 1752 |
| BlsI | GCNGC | 3 cut(s) | 18, 642, 1753 |
| Bme1390I | CCNGG | 3 cut(s) | 1065, 1080, 1142 |
| Bme18I | GGWCC | 6 cut(s) | 1067, 1206, 2045, 2453, 2747, 2926 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1314 |
| BmeT110I | CYCGRG | 1 cut(s) | 2799 |
| BmgT120I | GGNCC | 7 cut(s) | 1067, 1206, 2045, 2453, 2747, 2926, 3267 |
| BmiI | GGNNCC | 7 cut(s) | 195, 1107, 1139, 1380, 2268, 2653, 2928 |
| BmrFI | CCNGG | 3 cut(s) | 1065, 1080, 1142 |
| BmrI | ACTGGG | 1 cut(s) | 2177 |
| BmsI | GCATC | 8 cut(s) | 437, 652, 726, 844, 908, 1150, 2716, 3214 |
| BmuI | ACTGGG | 1 cut(s) | 2177 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1726, 1758, 2863, 2895 |
| Bpu10I | CCTNAGC | 3 cut(s) | 761, 1071, 2880 |
| Bpu14I | TTCGAA | 1 cut(s) | 812 |
| BpuEI | CTTGAG | 2 cut(s) | 278, 1207 |
| BpuMI | CCSGG | 1 cut(s) | 1080 |
| Bsa29I | ATCGAT | 1 cut(s) | 1092 |
| BsaAI | YACGTR | 1 cut(s) | 972 |
| BsaBI | GATNNNNATC | 2 cut(s) | 2211, 3189 |
| BsaI | GGTCTC | 1 cut(s) | 2005 |
| BsaJI | CCNNGG | 4 cut(s) | 755, 1016, 1141, 3219 |
| BsaWI | WCCGGW | 3 cut(s) | 517, 1241, 2269 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 665, 1229, 1256, 1409 |
| Bse1I | ACTGG | 2 cut(s) | 986, 2183 |
| Bse3DI | GCAATG | 1 cut(s) | 3028 |
| Bse8I | GATNNNNATC | 2 cut(s) | 2211, 3189 |
| BseAI | TCCGGA | 1 cut(s) | 1241 |
| BseBI | CCWGG | 2 cut(s) | 1065, 1142 |
| BseCI | ATCGAT | 1 cut(s) | 1092 |
| BseDI | CCNNGG | 4 cut(s) | 755, 1016, 1141, 3219 |
| BseJI | GATNNNNATC | 2 cut(s) | 2211, 3189 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 665, 1229, 1256, 1409 |
| BseMI | GCAATG | 1 cut(s) | 3028 |
| BseNI | ACTGG | 2 cut(s) | 986, 2183 |
| BseSI | GKGCMC | 1 cut(s) | 3049 |
| BseXI | GCAGC | 3 cut(s) | 3, 652, 1738 |
| BsgI | GTGCAG | 2 cut(s) | 1868, 2349 |
| BshFI | GGCC | 7 cut(s) | 889, 985, 1249, 1420, 2076, 2915, 3268 |
| BshNI | GGYRCC | 2 cut(s) | 1105, 2651 |
| BshVI | ATCGAT | 1 cut(s) | 1092 |
| BsiHKAI | GWGCWC | 5 cut(s) | 58, 174, 1744, 2553, 3049 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2799 |
| BsiSI | CCGG | 4 cut(s) | 518, 1079, 1242, 2270 |
| BslFI | GGGAC | 2 cut(s) | 2441, 2912 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 665, 1229, 1256, 1409 |
| BsmAI | GTCTC | 6 cut(s) | 263, 335, 835, 1046, 2005, 2308 |
| BsmFI | GGGAC | 2 cut(s) | 2441, 2912 |
| BsmI | GAATGC | 2 cut(s) | 808, 2301 |
| BsnI | GGCC | 7 cut(s) | 889, 985, 1249, 1420, 2076, 2915, 3268 |
| Bso31I | GGTCTC | 1 cut(s) | 2005 |
| BsoBI | CYCGRG | 1 cut(s) | 2799 |
| Bsp119I | TTCGAA | 1 cut(s) | 812 |
| Bsp1286I | GDGCHC | 5 cut(s) | 58, 174, 1744, 2553, 3049 |
| Bsp13I | TCCGGA | 1 cut(s) | 1241 |
| Bsp1407I | TGTACA | 1 cut(s) | 404 |
| Bsp19I | CCATGG | 2 cut(s) | 1016, 3219 |
| BspACI | CCGC | 3 cut(s) | 1367, 2494, 2625 |
| BspANI | GGCC | 7 cut(s) | 889, 985, 1249, 1420, 2076, 2915, 3268 |
| BspDI | ATCGAT | 1 cut(s) | 1092 |
| BspEI | TCCGGA | 1 cut(s) | 1241 |
| BspHI | TCATGA | 2 cut(s) | 247, 955 |
| BspLI | GGNNCC | 7 cut(s) | 195, 1107, 1139, 1380, 2268, 2653, 2928 |
| BspMAI | CTGCAG | 1 cut(s) | 2026 |
| BspPI | GGATC | 7 cut(s) | 188, 201, 899, 2207, 2214, 2261, 2274 |
| BspT104I | TTCGAA | 1 cut(s) | 812 |
| BspT107I | GGYRCC | 2 cut(s) | 1105, 2651 |
| BspTNI | GGTCTC | 1 cut(s) | 2005 |
| BsrDI | GCAATG | 1 cut(s) | 3028 |
| BsrGI | TGTACA | 1 cut(s) | 404 |
| BsrI | ACTGG | 2 cut(s) | 986, 2183 |
| BssECI | CCNNGG | 4 cut(s) | 755, 1016, 1141, 3219 |
| BssSI | CACGAG | 1 cut(s) | 2757 |
| BssT1I | CCWWGG | 3 cut(s) | 755, 1016, 3219 |
| Bst2BI | CACGAG | 1 cut(s) | 2757 |
| Bst2UI | CCWGG | 2 cut(s) | 1065, 1142 |
| Bst4CI | ACNGT | 3 cut(s) | 1210, 2152, 2854 |
| Bst6I | CTCTTC | 5 cut(s) | 1446, 1559, 1604, 1989, 3109 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 434 |
| BstAUI | TGTACA | 1 cut(s) | 404 |
| BstBAI | YACGTR | 1 cut(s) | 972 |
| BstBI | TTCGAA | 1 cut(s) | 812 |
| BstC8I | GCNNGC | 4 cut(s) | 1740, 2400, 2542, 2877 |
| BstDSI | CCRYGG | 2 cut(s) | 1016, 3219 |
| BstHHI | GCGC | 1 cut(s) | 2614 |
| BstMAI | GTCTC | 6 cut(s) | 263, 335, 835, 1046, 2005, 2308 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 434, 1748, 2500 |
| BstNI | CCWGG | 2 cut(s) | 1065, 1142 |
| BstNSI | RCATGY | 5 cut(s) | 602, 606, 1272, 1296, 2972 |
| BstSCI | CCNGG | 3 cut(s) | 1063, 1078, 1140 |
| BstSFI | CTRYAG | 3 cut(s) | 1905, 2022, 3246 |
| BstSLI | GKGCMC | 1 cut(s) | 3049 |
| BstSNI | TACGTA | 1 cut(s) | 972 |
| BstV1I | GCAGC | 3 cut(s) | 3, 652, 1738 |
| BstX2I | RGATCY | 7 cut(s) | 193, 253, 904, 1425, 2206, 2266, 3099 |
| BstYI | RGATCY | 7 cut(s) | 193, 253, 904, 1425, 2206, 2266, 3099 |
| Bsu15I | ATCGAT | 1 cut(s) | 1092 |
| BsuRI | GGCC | 7 cut(s) | 889, 985, 1249, 1420, 2076, 2915, 3268 |
| BsuTUI | ATCGAT | 1 cut(s) | 1092 |
| BtgI | CCRYGG | 2 cut(s) | 1016, 3219 |
| BtsI | GCAGTG | 1 cut(s) | 2830 |
| BtsIMutI | CAGTG | 2 cut(s) | 1917, 2830 |
| Cac8I | GCNNGC | 4 cut(s) | 1740, 2400, 2542, 2877 |
| CaiI | CAGNNNCTG | 1 cut(s) | 646 |
| CciI | TCATGA | 2 cut(s) | 247, 955 |
| CfoI | GCGC | 1 cut(s) | 2614 |
| Cfr13I | GGNCC | 7 cut(s) | 1067, 1206, 2045, 2453, 2747, 2926, 3267 |
| ClaI | ATCGAT | 1 cut(s) | 1092 |
| CsiI | ACCWGGT | 1 cut(s) | 1063 |
| Csp6I | GTAC | 5 cut(s) | 405, 973, 1156, 2509, 3120 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 785, 820 |
| CviQI | GTAC | 5 cut(s) | 405, 973, 1156, 2509, 3120 |
| DraI | TTTAAA | 3 cut(s) | 363, 2670, 2910 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1314 |
| EaeI | YGGCCR | 2 cut(s) | 887, 983 |
| Eam1104I | CTCTTC | 5 cut(s) | 1446, 1559, 1604, 1989, 3109 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1314 |
| EarI | CTCTTC | 5 cut(s) | 1446, 1559, 1604, 1989, 3109 |
| Ecl136II | GAGCTC | 1 cut(s) | 56 |
| Eco105I | TACGTA | 1 cut(s) | 972 |
| Eco130I | CCWWGG | 3 cut(s) | 755, 1016, 3219 |
| Eco147I | AGGCCT | 1 cut(s) | 1420 |
| Eco24I | GRGCYC | 1 cut(s) | 58 |
| Eco31I | GGTCTC | 1 cut(s) | 2005 |
| Eco32I | GATATC | 1 cut(s) | 1090 |
| Eco47I | GGWCC | 6 cut(s) | 1067, 1206, 2045, 2453, 2747, 2926 |
| Eco53kI | GAGCTC | 1 cut(s) | 56 |
| Eco57I | CTGAAG | 8 cut(s) | 120, 1341, 1518, 1866, 1995, 2091, 2598, 3111 |
| Eco88I | CYCGRG | 1 cut(s) | 2799 |
| EcoICRI | GAGCTC | 1 cut(s) | 56 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1067, 2747, 2926 |
| EcoRI | GAATTC | 1 cut(s) | 94 |
| EcoRII | CCWGG | 2 cut(s) | 1063, 1140 |
| EcoRV | GATATC | 1 cut(s) | 1090 |
| EcoT14I | CCWWGG | 3 cut(s) | 755, 1016, 3219 |
| EcoT22I | ATGCAT | 3 cut(s) | 604, 859, 1165 |
| EcoT38I | GRGCYC | 1 cut(s) | 58 |
| ErhI | CCWWGG | 3 cut(s) | 755, 1016, 3219 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2880, 2912 |
| FaqI | GGGAC | 2 cut(s) | 2441, 2912 |
| FblI | GTMKAC | 2 cut(s) | 968, 3001 |
| Fnu4HI | GCNGC | 3 cut(s) | 17, 641, 1752 |
| FriOI | GRGCYC | 1 cut(s) | 58 |
| Fsp4HI | GCNGC | 3 cut(s) | 17, 641, 1752 |
| FspBI | CTAG | 5 cut(s) | 345, 501, 563, 1745, 1803 |
| GlaI | GCGC | 1 cut(s) | 2613 |
| GluI | GCNGC | 3 cut(s) | 17, 641, 1752 |
| HaeIII | GGCC | 7 cut(s) | 889, 985, 1249, 1420, 2076, 2915, 3268 |
| HapII | CCGG | 4 cut(s) | 518, 1079, 1242, 2270 |
| HhaI | GCGC | 1 cut(s) | 2614 |
| Hin6I | GCGC | 1 cut(s) | 2612 |
| HinP1I | GCGC | 1 cut(s) | 2612 |
| HincII | GTYRAC | 3 cut(s) | 1050, 1308, 3002 |
| HindII | GTYRAC | 3 cut(s) | 1050, 1308, 3002 |
| HindIII | AAGCTT | 2 cut(s) | 1710, 2894 |
| HinfI | GANTC | 9 cut(s) | 239, 262, 539, 823, 1997, 2344, 2592, 2684, 2802 |
| HpaII | CCGG | 4 cut(s) | 518, 1079, 1242, 2270 |
| HphI | GGTGA | 4 cut(s) | 236, 1448, 1589, 3251 |
| HpyCH4III | ACNGT | 3 cut(s) | 1210, 2152, 2854 |
| HpyCH4IV | ACGT | 3 cut(s) | 971, 1052, 2377 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 434, 1748, 2500 |
| HpySE526I | ACGT | 3 cut(s) | 971, 1052, 2377 |
| HspAI | GCGC | 1 cut(s) | 2612 |
| Kpn2I | TCCGGA | 1 cut(s) | 1241 |
| LmnI | GCTCC | 5 cut(s) | 53, 2548, 3019, 3281, 3294 |
| Lsp1109I | GCAGC | 3 cut(s) | 3, 652, 1738 |
| LweI | GCATC | 8 cut(s) | 437, 652, 726, 844, 908, 1150, 2716, 3214 |
| MabI | ACCWGGT | 1 cut(s) | 1063 |
| MaeI | CTAG | 5 cut(s) | 345, 501, 563, 1745, 1803 |
| MaeII | ACGT | 3 cut(s) | 971, 1052, 2377 |
| MfeI | CAATTG | 2 cut(s) | 1464, 2382 |
| MflI | RGATCY | 7 cut(s) | 193, 253, 904, 1425, 2206, 2266, 3099 |
| MhlI | GDGCHC | 5 cut(s) | 58, 174, 1744, 2553, 3049 |
| MlsI | TGGCCA | 2 cut(s) | 889, 985 |
| MluNI | TGGCCA | 2 cut(s) | 889, 985 |
| MlyI | GAGTC | 6 cut(s) | 548, 832, 2006, 2601, 2693, 2811 |
| MmeI | TCCRAC | 3 cut(s) | 2072, 2219, 3137 |
| Mox20I | TGGCCA | 2 cut(s) | 889, 985 |
| Mph1103I | ATGCAT | 3 cut(s) | 604, 859, 1165 |
| MroI | TCCGGA | 1 cut(s) | 1241 |
| MscI | TGGCCA | 2 cut(s) | 889, 985 |
| MslI | CAYNNNNRTG | 6 cut(s) | 603, 862, 1021, 1199, 2087, 3284 |
| Msp20I | TGGCCA | 2 cut(s) | 889, 985 |
| MspA1I | CMGCKG | 2 cut(s) | 978, 1973 |
| MspI | CCGG | 4 cut(s) | 518, 1079, 1242, 2270 |
| MspR9I | CCNGG | 3 cut(s) | 1065, 1080, 1142 |
| MunI | CAATTG | 2 cut(s) | 1464, 2382 |
| Mva1269I | GAATGC | 2 cut(s) | 808, 2301 |
| MvaI | CCWGG | 2 cut(s) | 1065, 1142 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 434, 1748, 2500 |
| NciI | CCSGG | 1 cut(s) | 1080 |
| NcoI | CCATGG | 2 cut(s) | 1016, 3219 |
| NlaIV | GGNNCC | 7 cut(s) | 195, 1107, 1139, 1380, 2268, 2653, 2928 |
| NmuCI | GTSAC | 5 cut(s) | 1174, 1998, 2095, 2685, 2985 |
| NsiI | ATGCAT | 3 cut(s) | 604, 859, 1165 |
| NspI | RCATGY | 5 cut(s) | 602, 606, 1272, 1296, 2972 |
| NspV | TTCGAA | 1 cut(s) | 812 |
| PaeR7I | CTCGAG | 1 cut(s) | 2799 |
| PagI | TCATGA | 2 cut(s) | 247, 955 |
| PceI | AGGCCT | 1 cut(s) | 1420 |
| PciI | ACATGT | 1 cut(s) | 1292 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 502, 1627 |
| PctI | GAATGC | 2 cut(s) | 808, 2301 |
| PfeI | GAWTC | 3 cut(s) | 239, 262, 2344 |
| PflFI | GACNNNGTC | 2 cut(s) | 2390, 2451 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 665, 1229, 1409 |
| PkrI | GCNGC | 3 cut(s) | 18, 642, 1753 |
| PleI | GAGTC | 6 cut(s) | 547, 831, 2005, 2600, 2692, 2810 |
| PpsI | GAGTC | 6 cut(s) | 547, 831, 2005, 2600, 2692, 2810 |
| Ppu21I | YACGTR | 1 cut(s) | 972 |
| PpuMI | RGGWCCY | 3 cut(s) | 1067, 2747, 2926 |
| PscI | ACATGT | 1 cut(s) | 1292 |
| Psp124BI | GAGCTC | 1 cut(s) | 58 |
| Psp5II | RGGWCCY | 3 cut(s) | 1067, 2747, 2926 |
| Psp6I | CCWGG | 2 cut(s) | 1063, 1140 |
| PspGI | CCWGG | 2 cut(s) | 1063, 1140 |
| PspN4I | GGNNCC | 7 cut(s) | 195, 1107, 1139, 1380, 2268, 2653, 2928 |
| PspPI | GGNCC | 7 cut(s) | 1067, 1206, 2045, 2453, 2747, 2926, 3267 |
| PspPPI | RGGWCCY | 3 cut(s) | 1067, 2747, 2926 |
| PstI | CTGCAG | 1 cut(s) | 2026 |
| PstNI | CAGNNNCTG | 1 cut(s) | 646 |
| PsuI | RGATCY | 7 cut(s) | 193, 253, 904, 1425, 2206, 2266, 3099 |
| PsyI | GACNNNGTC | 2 cut(s) | 2390, 2451 |
| PvuII | CAGCTG | 2 cut(s) | 978, 1973 |
| RsaI | GTAC | 5 cut(s) | 406, 974, 1157, 2510, 3121 |
| RsaNI | GTAC | 5 cut(s) | 405, 973, 1156, 2509, 3120 |
| RseI | CAYNNNNRTG | 6 cut(s) | 603, 862, 1021, 1199, 2087, 3284 |
| SacI | GAGCTC | 1 cut(s) | 58 |
| SalI | GTCGAC | 1 cut(s) | 3000 |
| SatI | GCNGC | 3 cut(s) | 17, 641, 1752 |
| Sau96I | GGNCC | 7 cut(s) | 1067, 1206, 2045, 2453, 2747, 2926, 3267 |
| SchI | GAGTC | 6 cut(s) | 548, 832, 2006, 2601, 2693, 2811 |
| ScrFI | CCNGG | 3 cut(s) | 1065, 1080, 1142 |
| SduI | GDGCHC | 5 cut(s) | 58, 174, 1744, 2553, 3049 |
| SexAI | ACCWGGT | 1 cut(s) | 1063 |
| SfaNI | GCATC | 8 cut(s) | 437, 652, 726, 844, 908, 1150, 2716, 3214 |
| SfcI | CTRYAG | 3 cut(s) | 1905, 2022, 3246 |
| Sfr274I | CTCGAG | 1 cut(s) | 2799 |
| SfuI | TTCGAA | 1 cut(s) | 812 |
| SinI | GGWCC | 6 cut(s) | 1067, 1206, 2045, 2453, 2747, 2926 |
| SlaI | CTCGAG | 1 cut(s) | 2799 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 603, 862, 1021, 1199, 2087, 3284 |
| SmlI | CTYRAG | 3 cut(s) | 257, 1186, 2799 |
| SmoI | CTYRAG | 3 cut(s) | 257, 1186, 2799 |
| SnaBI | TACGTA | 1 cut(s) | 972 |
| SpeI | ACTAGT | 1 cut(s) | 1802 |
| SseBI | AGGCCT | 1 cut(s) | 1420 |
| SsiI | CCGC | 3 cut(s) | 1367, 2494, 2625 |
| SspI | AATATT | 1 cut(s) | 1653 |
| SspMI | CTAG | 5 cut(s) | 345, 501, 563, 1745, 1803 |
| SstI | GAGCTC | 1 cut(s) | 58 |
| StuI | AGGCCT | 1 cut(s) | 1420 |
| StyD4I | CCNGG | 3 cut(s) | 1063, 1078, 1140 |
| StyI | CCWWGG | 3 cut(s) | 755, 1016, 3219 |
| TaaI | ACNGT | 3 cut(s) | 1210, 2152, 2854 |
| TaiI | ACGT | 3 cut(s) | 974, 1055, 2380 |
| TaqI | TCGA | 8 cut(s) | 483, 812, 910, 1092, 1659, 2211, 2800, 3001 |
| TatI | WGTACW | 3 cut(s) | 404, 2508, 3119 |
| TfiI | GAWTC | 3 cut(s) | 239, 262, 2344 |
| TscAI | CASTG | 2 cut(s) | 1924, 2830 |
| TseFI | GTSAC | 5 cut(s) | 1174, 1998, 2095, 2685, 2985 |
| TseI | GCWGC | 3 cut(s) | 16, 640, 1751 |
| Tsp45I | GTSAC | 5 cut(s) | 1174, 1998, 2095, 2685, 2985 |
| TspGWI | ACGGA | 1 cut(s) | 2127 |
| TspRI | CASTG | 2 cut(s) | 1924, 2830 |
| Tth111I | GACNNNGTC | 2 cut(s) | 2390, 2451 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 665, 1229, 1409 |
| VneI | GTGCAC | 1 cut(s) | 3045 |
| VpaK11BI | GGWCC | 6 cut(s) | 1067, 1206, 2045, 2453, 2747, 2926 |
| XceI | RCATGY | 5 cut(s) | 602, 606, 1272, 1296, 2972 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1919 |
| XhoI | CTCGAG | 1 cut(s) | 2799 |
| XmiI | GTMKAC | 2 cut(s) | 968, 3001 |
| XspI | CTAG | 5 cut(s) | 345, 501, 563, 1745, 1803 |
| Zsp2I | ATGCAT | 3 cut(s) | 604, 859, 1165 |