Rmu_co8090826.1_g000001

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8090826.1
OG0000944
Physical Location & Seq
Forward (+)
304 .. 593
290 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8090826.1_g000001.1.cds

Sequence Viewer

Length: 290 bp
atgttgctactacagttcacttccaactccataccctttctctgcttcctcttattgctcccgatcatgaccattagctccgattcgtcggtctacgacgtcctcctggcccacggccttccgatggggctgctgcctaagggtgtgactcagttcgaaatcgacgagggcggccggttccaggtgtacctggatcaggcctgcaatgccaagttcgagagtgagttgcattacgacaggaacgtgtctgggactctcagttacggccggatcggagccttgtcgggtat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

96

Amino Acids

10.55

Weight (kDa)

4.78

Isoelectric Point (pI)

36.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 102
AccI GTMKAC 1 cut(s) 93
AciI CCGC 1 cut(s) 171
AclWI GGATC 2 cut(s) 201, 278
AcoI YGGCCR 2 cut(s) 172, 265
AcyI GRCGYC 1 cut(s) 99
AfaI GTAC 1 cut(s) 188
AfiI CCNNNNNNNGG 3 cut(s) 124, 181, 196
AflIII ACRYGT 1 cut(s) 243
AjnI CCWGG 3 cut(s) 105, 180, 189
AluBI AGCT 1 cut(s) 78
AluI AGCT 1 cut(s) 78
AlwI GGATC 2 cut(s) 201, 278
AoxI GGCC 5 cut(s) 108, 115, 172, 198, 265
ApeKI GCWGC 2 cut(s) 130, 133
AspS9I GGNCC 1 cut(s) 109
AsuII TTCGAA 1 cut(s) 156
AxyI CCTNAGG 1 cut(s) 138
BbvI GCAGC 2 cut(s) 117, 120
BccI CCATC 1 cut(s) 118
BceAI ACGGC 2 cut(s) 130, 280
BcgI CGANNNNNNTGC 2 cut(s) 112, 146
BciT130I CCWGG 3 cut(s) 107, 182, 191
BfmI CTRYAG 1 cut(s) 11
BisI GCNGC 3 cut(s) 131, 134, 172
BlsI GCNGC 3 cut(s) 132, 135, 173
Bme1390I CCNGG 3 cut(s) 107, 182, 191
BmgT120I GGNCC 1 cut(s) 109
BmiI GGNNCC 2 cut(s) 179, 277
BmrFI CCNGG 3 cut(s) 107, 182, 191
Bpu14I TTCGAA 1 cut(s) 156
BsaHI GRCGYC 1 cut(s) 99
BsaJI CCNNGG 1 cut(s) 112
Bsc4I CCNNNNNNNGG 3 cut(s) 124, 181, 196
Bse118I RCCGGY 1 cut(s) 174
Bse21I CCTNAGG 1 cut(s) 138
Bse3DI GCAATG 1 cut(s) 211
BseBI CCWGG 3 cut(s) 107, 182, 191
BseDI CCNNGG 1 cut(s) 112
BseLI CCNNNNNNNGG 3 cut(s) 124, 181, 196
BseMI GCAATG 1 cut(s) 211
BseMII CTCAG 2 cut(s) 164, 271
BseX3I CGGCCG 2 cut(s) 172, 265
BseXI GCAGC 2 cut(s) 117, 120
Bsh1285I CGRYCG 2 cut(s) 175, 268
BshFI GGCC 5 cut(s) 110, 117, 174, 200, 267
BsiEI CGRYCG 2 cut(s) 175, 268
BsiSI CCGG 2 cut(s) 175, 268
BslFI GGGAC 1 cut(s) 265
BslI CCNNNNNNNGG 3 cut(s) 124, 181, 196
BsmFI GGGAC 1 cut(s) 265
BsnI GGCC 5 cut(s) 110, 117, 174, 200, 267
Bsp119I TTCGAA 1 cut(s) 156
Bsp143I GATC 3 cut(s) 63, 193, 270
BspACI CCGC 1 cut(s) 171
BspANI GGCC 5 cut(s) 110, 117, 174, 200, 267
BspCNI CTCAG 2 cut(s) 163, 270
BspHI TCATGA 1 cut(s) 66
BspLI GGNNCC 2 cut(s) 179, 277
BspPI GGATC 2 cut(s) 201, 278
BspT104I TTCGAA 1 cut(s) 156
BsrDI GCAATG 1 cut(s) 211
BsrFI RCCGGY 1 cut(s) 174
BssAI RCCGGY 1 cut(s) 174
BssECI CCNNGG 1 cut(s) 112
BssMI GATC 3 cut(s) 63, 193, 270
BssNI GRCGYC 1 cut(s) 99
Bst2UI CCWGG 3 cut(s) 107, 182, 191
Bst4CI ACNGT 1 cut(s) 15
BstACI GRCGYC 1 cut(s) 99
BstBI TTCGAA 1 cut(s) 156
BstC8I GCNNGC 1 cut(s) 202
BstDEI CTNAG 3 cut(s) 138, 150, 257
BstDSI CCRYGG 1 cut(s) 112
BstENI CCTNNNNNAGG 1 cut(s) 194
BstKTI GATC 3 cut(s) 66, 196, 273
BstMBI GATC 3 cut(s) 63, 193, 270
BstMCI CGRYCG 2 cut(s) 175, 268
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstNI CCWGG 3 cut(s) 107, 182, 191
BstSCI CCNGG 3 cut(s) 105, 180, 189
BstSFI CTRYAG 1 cut(s) 11
BstV1I GCAGC 2 cut(s) 117, 120
BstZI CGGCCG 2 cut(s) 172, 265
Bsu36I CCTNAGG 1 cut(s) 138
BsuRI GGCC 5 cut(s) 110, 117, 174, 200, 267
BtgI CCRYGG 1 cut(s) 112
Cac8I GCNNGC 1 cut(s) 202
CciI TCATGA 1 cut(s) 66
Cfr10I RCCGGY 1 cut(s) 174
Cfr13I GGNCC 1 cut(s) 109
Csp6I GTAC 1 cut(s) 187
CviAII CATG 1 cut(s) 67
CviJI RGCY 8 cut(s) 78, 110, 117, 130, 174, 200, 267, 278
CviKI_1 RGCY 8 cut(s) 78, 110, 117, 130, 174, 200, 267, 278
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 3 cut(s) 138, 150, 257
DpnI GATC 3 cut(s) 65, 195, 272
DpnII GATC 3 cut(s) 63, 193, 270
EaeI YGGCCR 2 cut(s) 172, 265
EagI CGGCCG 2 cut(s) 172, 265
EclXI CGGCCG 2 cut(s) 172, 265
Eco147I AGGCCT 1 cut(s) 200
Eco52I CGGCCG 2 cut(s) 172, 265
Eco81I CCTNAGG 1 cut(s) 138
EcoNI CCTNNNNNAGG 1 cut(s) 194
EcoRII CCWGG 3 cut(s) 105, 180, 189
FaeI CATG 1 cut(s) 70
FaiI YATR 2 cut(s) 32, 68
FaqI GGGAC 1 cut(s) 265
FatI CATG 1 cut(s) 66
FblI GTMKAC 1 cut(s) 93
Fnu4HI GCNGC 3 cut(s) 131, 134, 172
Fsp4HI GCNGC 3 cut(s) 131, 134, 172
GluI GCNGC 3 cut(s) 131, 134, 172
HaeIII GGCC 5 cut(s) 110, 117, 174, 200, 267
HapII CCGG 2 cut(s) 175, 268
Hin1I GRCGYC 1 cut(s) 99
Hin1II CATG 1 cut(s) 70
HinfI GANTC 3 cut(s) 83, 148, 253
HpaII CCGG 2 cut(s) 175, 268
Hpy166II GTNNAC 3 cut(s) 18, 94, 187
Hpy188I TCNGA 3 cut(s) 82, 123, 275
Hpy188III TCNNGA 3 cut(s) 61, 67, 217
Hpy8I GTNNAC 3 cut(s) 18, 94, 187
Hpy99I CGWCG 3 cut(s) 91, 101, 167
HpyAV CCTTC 1 cut(s) 128
HpyCH4III ACNGT 1 cut(s) 15
HpyCH4IV ACGT 2 cut(s) 99, 243
HpyCH4V TGCA 2 cut(s) 204, 229
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
HpyF3I CTNAG 3 cut(s) 138, 150, 257
HpySE526I ACGT 2 cut(s) 99, 243
Hsp92I GRCGYC 1 cut(s) 99
Hsp92II CATG 1 cut(s) 70
Kzo9I GATC 3 cut(s) 63, 193, 270
LmnI GCTCC 3 cut(s) 63, 83, 275
Lsp1109I GCAGC 2 cut(s) 117, 120
MaeII ACGT 2 cut(s) 99, 243
MaeIII GTNAC 2 cut(s) 145, 260
MalI GATC 3 cut(s) 65, 195, 272
MboI GATC 3 cut(s) 63, 193, 270
MlyI GAGTC 2 cut(s) 142, 247
MmeI TCCRAC 1 cut(s) 48
MnlI CCTC 3 cut(s) 59, 113, 160
MspI CCGG 2 cut(s) 175, 268
MspR9I CCNGG 3 cut(s) 107, 182, 191
MvaI CCWGG 3 cut(s) 107, 182, 191
MwoI GCNNNNNNNGC 1 cut(s) 206
NdeII GATC 3 cut(s) 63, 193, 270
NlaIII CATG 1 cut(s) 70
NlaIV GGNNCC 2 cut(s) 179, 277
NmuCI GTSAC 1 cut(s) 145
NspV TTCGAA 1 cut(s) 156
PagI TCATGA 1 cut(s) 66
PceI AGGCCT 1 cut(s) 200
PcsI WCGNNNNNNNCGW 2 cut(s) 162, 240
PfeI GAWTC 1 cut(s) 83
PkrI GCNGC 3 cut(s) 132, 135, 173
PleI GAGTC 2 cut(s) 142, 247
PpsI GAGTC 2 cut(s) 142, 247
Psp6I CCWGG 3 cut(s) 105, 180, 189
PspGI CCWGG 3 cut(s) 105, 180, 189
PspN4I GGNNCC 2 cut(s) 179, 277
PspPI GGNCC 1 cut(s) 109
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
SatI GCNGC 3 cut(s) 131, 134, 172
Sau3AI GATC 3 cut(s) 63, 193, 270
Sau96I GGNCC 1 cut(s) 109
SchI GAGTC 2 cut(s) 142, 247
ScrFI CCNGG 3 cut(s) 107, 182, 191
SetI ASST 5 cut(s) 80, 102, 186, 192, 246
SfcI CTRYAG 1 cut(s) 11
SfuI TTCGAA 1 cut(s) 156
SseBI AGGCCT 1 cut(s) 200
SsiI CCGC 1 cut(s) 171
StuI AGGCCT 1 cut(s) 200
StyD4I CCNGG 3 cut(s) 105, 180, 189
TaaI ACNGT 1 cut(s) 15
TaiI ACGT 2 cut(s) 102, 246
TaqI TCGA 3 cut(s) 156, 162, 216
TaqII GACCGA 1 cut(s) 79
TauI GCSGC 1 cut(s) 174
TfiI GAWTC 1 cut(s) 83
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 2 cut(s) 130, 133
Tsp45I GTSAC 1 cut(s) 145
XagI CCTNNNNNAGG 1 cut(s) 194
XmiI GTMKAC 1 cut(s) 93
ZraI GACGTC 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.