AT4G28940

Bark storage protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000829
Physical Location & Seq
Forward (+)
14274341 .. 14277252
2912 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G28940.2

Sequence Viewer

Length: 1047 bp
ATGGGACACTTCTTGATAGGTTTTCTTGTAGTTGTCTTGTCCGTGGGAAATGTTATTGAAGAAGCAAATGGTGAAATACCTAGAACCACATTGGAAAAAATAGAGAGGATGAATCAAAAGGGTCCTTATTTGGGAATTGTAGCTCCAAACAACTATGAGCTTAACCCTCTTCTCGGTTCTAAAGCCTATTTCCCATCTTCTTCGTTGCCTTTCATCGATTTCGCAGGTCGAAAATTTCGATTTGGAAAATTATCAAACCAACCAGTGATAATCGTGATGTCGGGATTAGGAATGGTGAATGCAGGAGTAACAACACAATTACTGGTGAGCCTCTTTAGGCTGAAAGGAGTTTTGCATTATGGAATCGCTGGAAACGCAGATGTTAACCTTGAGATTGGCGACGTCACTATTCCTCAATATTGGGCACACTCTGGCCTTTGGAATTGGCAGAGGTATGGAGATGGGATTGACAACGAATTAGCTCTTGAATCCGGCGGAGACTATACTCGGGAAGTTGGTTATCTCCAGTTTTCCAAATATAGTAACCGAACCGATAACTTGCTTAATCGAGTTTGGTATCAACCGGAAGAAATCTTCCCGGTCACCGGAACTCCTGAAGAGCGGCAACATGTGTTCTGGATTCCCGTTGACAAGTCCTACTTGAAACTTGCACGCAAACTCGAGGACACGAAGCTACCGCAGTGTGTTAACACCACATGCCTTCCTCGACCACCGAAGGTCACCATCGTTAAACGTGGTATGAGTGCAAGTGTTTTCATCGACAACGCAGCTTACCGGACTTTCCTCAACTCCAAGTTTAACGCCACCGCCGTTGAAATGGAGAGCGCCGCCGTGGCTCTCATTTCCCACCAGCAAAACCTCCCTTTCATCGTCATCCGTGCCCTCTCCGATCTCGCTGGCGGCGGCTCCGACGTCTCCAACGAGGCCAGCATATTCAGCAGCCTCGCCGCAGAAAACTCCGTCGATATTCTCGTTAAGTTCGTTGCTTTGTTGCCTCCACACGAAAGCAAGATTCAATCAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNP_UDP_1

Protein Analysis

348

Amino Acids

38.48

Weight (kDa)

6.12

Isoelectric Point (pI)

29.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNP_UDP_1 PF01048 1 - 243 5.8e-21 Phosphorylase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 405, 936
Acc36I ACCTGC 1 cut(s) 215
AccBSI CCGCTC 1 cut(s) 622
AciI CCGC 8 cut(s) 495, 622, 698, 828, 849, 921, 924, 969
AcsI RAATTY 1 cut(s) 233
AcuI CTGAAG 1 cut(s) 636
AcyI GRCGYC 2 cut(s) 402, 933
AfiI CCNNNNNNNGG 3 cut(s) 131, 173, 605
AflIII ACRYGT 1 cut(s) 628
AgsI TTSAA 5 cut(s) 59, 488, 664, 836, 1037
AluBI AGCT 5 cut(s) 143, 160, 482, 694, 791
AluI AGCT 5 cut(s) 143, 160, 482, 694, 791
Alw26I GTCTC 2 cut(s) 492, 940
Ama87I CYCGRG 2 cut(s) 507, 680
AoxI GGCC 2 cut(s) 433, 945
ApeKI GCWGC 2 cut(s) 788, 960
ApoI RAATTY 1 cut(s) 233
AspLEI GCGC 1 cut(s) 848
AspS9I GGNCC 1 cut(s) 122
AsuC2I CCSGG 1 cut(s) 599
AsuHPI GGTGA 5 cut(s) 83, 307, 337, 595, 733
AvaI CYCGRG 2 cut(s) 507, 680
AvaII GGWCC 1 cut(s) 122
BaeGI GKGCMC 2 cut(s) 427, 904
BbvI GCAGC 2 cut(s) 800, 972
BccI CCATC 3 cut(s) 202, 455, 752
BceAI ACGGC 2 cut(s) 815, 836
BcnI CCSGG 1 cut(s) 599
BcoDI GTCTC 2 cut(s) 492, 940
BfaI CTAG 1 cut(s) 81
BfoI RGCGCY 1 cut(s) 849
BfuAI ACCTGC 1 cut(s) 215
BglI GCCNNNNNGGC 1 cut(s) 854
BisI GCNGC 7 cut(s) 623, 789, 849, 922, 925, 961, 969
BlsI GCNGC 7 cut(s) 624, 790, 850, 923, 926, 962, 970
Bme1390I CCNGG 1 cut(s) 599
Bme18I GGWCC 1 cut(s) 122
BmeT110I CYCGRG 2 cut(s) 507, 680
BmgT120I GGNCC 1 cut(s) 122
BmiI GGNNCC 2 cut(s) 123, 928
BmrFI CCNGG 1 cut(s) 599
BpmI CTGGAG 1 cut(s) 509
BpuEI CTTGAG 1 cut(s) 410
BpuMI CCSGG 1 cut(s) 599
Bsa29I ATCGAT 1 cut(s) 216
BsaHI GRCGYC 2 cut(s) 402, 933
BsaJI CCNNGG 2 cut(s) 42, 852
BsaWI WCCGGW 3 cut(s) 583, 605, 795
BsaXI ACNNNNNCTCC 2 cut(s) 595, 625
Bsc4I CCNNNNNNNGG 3 cut(s) 131, 173, 605
Bse1I ACTGG 3 cut(s) 263, 327, 526
BseCI ATCGAT 1 cut(s) 216
BseDI CCNNGG 2 cut(s) 42, 852
BseGI GGATG 2 cut(s) 114, 894
BseLI CCNNNNNNNGG 3 cut(s) 131, 173, 605
BseNI ACTGG 3 cut(s) 263, 327, 526
BseSI GKGCMC 2 cut(s) 427, 904
BseXI GCAGC 2 cut(s) 800, 972
BshFI GGCC 2 cut(s) 435, 947
BshVI ATCGAT 1 cut(s) 216
BsiHKCI CYCGRG 2 cut(s) 507, 680
BsiSI CCGG 5 cut(s) 492, 584, 599, 606, 796
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 3 cut(s) 131, 173, 605
BsmAI GTCTC 2 cut(s) 492, 940
BsmBI CGTCTC 1 cut(s) 940
BsmFI GGGAC 1 cut(s) 18
BsmI GAATGC 1 cut(s) 304
BsnI GGCC 2 cut(s) 435, 947
BsoBI CYCGRG 2 cut(s) 507, 680
Bsp1286I GDGCHC 2 cut(s) 427, 904
Bsp143I GATC 1 cut(s) 910
BspACI CCGC 8 cut(s) 495, 622, 698, 828, 849, 921, 924, 969
BspANI GGCC 2 cut(s) 435, 947
BspDI ATCGAT 1 cut(s) 216
BspLI GGNNCC 2 cut(s) 123, 928
BspMI ACCTGC 1 cut(s) 215
BspQI GCTCTTC 1 cut(s) 612
BsrBI CCGCTC 1 cut(s) 622
BsrI ACTGG 3 cut(s) 263, 327, 526
BssECI CCNNGG 2 cut(s) 42, 852
BssMI GATC 1 cut(s) 910
BssNI GRCGYC 2 cut(s) 402, 933
Bst6I CTCTTC 2 cut(s) 174, 612
BstACI GRCGYC 2 cut(s) 402, 933
BstC8I GCNNGC 3 cut(s) 673, 919, 949
BstDSI CCRYGG 2 cut(s) 42, 852
BstEII GGTNACC 2 cut(s) 601, 739
BstF5I GGATG 2 cut(s) 114, 894
BstH2I RGCGCY 1 cut(s) 849
BstHHI GCGC 1 cut(s) 848
BstKTI GATC 1 cut(s) 913
BstMAI GTCTC 2 cut(s) 492, 940
BstMBI GATC 1 cut(s) 910
BstMWI GCNNNNNNNGC 3 cut(s) 374, 854, 957
BstNSI RCATGY 2 cut(s) 632, 720
BstPI GGTNACC 2 cut(s) 601, 739
BstSCI CCNGG 1 cut(s) 597
BstSLI GKGCMC 2 cut(s) 427, 904
BstV1I GCAGC 2 cut(s) 800, 972
Bsu15I ATCGAT 1 cut(s) 216
BsuRI GGCC 2 cut(s) 435, 947
BsuTUI ATCGAT 1 cut(s) 216
BtgI CCRYGG 2 cut(s) 42, 852
BtsCI GGATG 2 cut(s) 114, 894
BtsI GCAGTG 1 cut(s) 707
BtsIMutI CAGTG 2 cut(s) 270, 707
BveI ACCTGC 1 cut(s) 215
Cac8I GCNNGC 3 cut(s) 673, 919, 949
CfoI GCGC 1 cut(s) 848
Cfr13I GGNCC 1 cut(s) 122
ClaI ATCGAT 1 cut(s) 216
CspCI CAANNNNNGTGG 2 cut(s) 814, 849
CviAII CATG 2 cut(s) 629, 717
DpnI GATC 1 cut(s) 912
DpnII GATC 1 cut(s) 910
Eam1104I CTCTTC 2 cut(s) 174, 612
EarI CTCTTC 2 cut(s) 174, 612
EciI GGCGGA 1 cut(s) 510
Eco47I GGWCC 1 cut(s) 122
Eco57I CTGAAG 1 cut(s) 636
Eco88I CYCGRG 2 cut(s) 507, 680
Eco91I GGTNACC 2 cut(s) 601, 739
EcoO109I RGGNCCY 1 cut(s) 122
EcoO65I GGTNACC 2 cut(s) 601, 739
Esp3I CGTCTC 1 cut(s) 940
FaeI CATG 2 cut(s) 632, 720
FaiI YATR 9 cut(s) 156, 360, 456, 504, 540, 630, 718, 761, 953
FalI AAGNNNNNCTT 2 cut(s) 644, 676
FaqI GGGAC 1 cut(s) 18
FatI CATG 2 cut(s) 628, 716
Fnu4HI GCNGC 7 cut(s) 623, 789, 849, 922, 925, 961, 969
FokI GGATG 2 cut(s) 121, 881
Fsp4HI GCNGC 7 cut(s) 623, 789, 849, 922, 925, 961, 969
FspBI CTAG 1 cut(s) 81
GlaI GCGC 1 cut(s) 847
GluI GCNGC 7 cut(s) 623, 789, 849, 922, 925, 961, 969
GsuI CTGGAG 1 cut(s) 509
HaeII RGCGCY 1 cut(s) 849
HaeIII GGCC 2 cut(s) 435, 947
HapII CCGG 5 cut(s) 492, 584, 599, 606, 796
HhaI GCGC 1 cut(s) 848
Hin1I GRCGYC 2 cut(s) 402, 933
Hin1II CATG 2 cut(s) 632, 720
Hin6I GCGC 1 cut(s) 846
HinP1I GCGC 1 cut(s) 846
HincII GTYRAC 3 cut(s) 385, 649, 709
HindII GTYRAC 3 cut(s) 385, 649, 709
HinfI GANTC 5 cut(s) 112, 363, 488, 640, 1033
HpaI GTTAAC 2 cut(s) 385, 709
HpaII CCGG 5 cut(s) 492, 584, 599, 606, 796
HphI GGTGA 5 cut(s) 83, 307, 337, 595, 733
Hpy166II GTNNAC 3 cut(s) 385, 649, 709
Hpy188I TCNGA 3 cut(s) 910, 931, 1042
Hpy188III TCNNGA 7 cut(s) 13, 274, 282, 485, 509, 614, 637
Hpy8I GTNNAC 3 cut(s) 385, 649, 709
Hpy99I CGWCG 3 cut(s) 404, 935, 986
HpyAV CCTTC 2 cut(s) 730, 731
HpyCH4IV ACGT 3 cut(s) 402, 754, 933
HpyCH4V TGCA 4 cut(s) 302, 355, 671, 767
HpyF10VI GCNNNNNNNGC 3 cut(s) 374, 854, 957
HpySE526I ACGT 3 cut(s) 402, 754, 933
Hsp92I GRCGYC 2 cut(s) 402, 933
Hsp92II CATG 2 cut(s) 632, 720
HspAI GCGC 1 cut(s) 846
KspAI GTTAAC 2 cut(s) 385, 709
Kzo9I GATC 1 cut(s) 910
LguI GCTCTTC 1 cut(s) 612
LmnI GCTCC 2 cut(s) 148, 932
Lsp1109I GCAGC 2 cut(s) 800, 972
MaeI CTAG 1 cut(s) 81
MaeII ACGT 3 cut(s) 402, 754, 933
MaeIII GTNAC 5 cut(s) 307, 403, 542, 601, 739
MalI GATC 1 cut(s) 912
MbiI CCGCTC 1 cut(s) 622
MboI GATC 1 cut(s) 910
MboII GAAGA 7 cut(s) 71, 161, 189, 192, 586, 599, 629
MhlI GDGCHC 2 cut(s) 427, 904
MluCI AATT 6 cut(s) 135, 233, 248, 317, 442, 476
MmeI TCCRAC 2 cut(s) 954, 963
MseI TTAA 7 cut(s) 162, 384, 564, 708, 750, 819, 996
MspI CCGG 5 cut(s) 492, 584, 599, 606, 796
MspR9I CCNGG 1 cut(s) 599
Mva1269I GAATGC 1 cut(s) 304
MwoI GCNNNNNNNGC 3 cut(s) 374, 854, 957
NciI CCSGG 1 cut(s) 599
NdeII GATC 1 cut(s) 910
NlaIII CATG 2 cut(s) 632, 720
NlaIV GGNNCC 2 cut(s) 123, 928
NmuCI GTSAC 3 cut(s) 403, 601, 739
NspI RCATGY 2 cut(s) 632, 720
PaeR7I CTCGAG 1 cut(s) 680
PciI ACATGT 1 cut(s) 628
PciSI GCTCTTC 1 cut(s) 612
PcsI WCGNNNNNNNCGW 5 cut(s) 235, 828, 939, 990, 999
PctI GAATGC 1 cut(s) 304
PfeI GAWTC 5 cut(s) 112, 363, 488, 640, 1033
PkrI GCNGC 7 cut(s) 624, 790, 850, 923, 926, 962, 970
PpuMI RGGWCCY 1 cut(s) 122
PscI ACATGT 1 cut(s) 628
Psp5II RGGWCCY 1 cut(s) 122
PspEI GGTNACC 2 cut(s) 601, 739
PspN4I GGNNCC 2 cut(s) 123, 928
PspPI GGNCC 1 cut(s) 122
PspPPI RGGWCCY 1 cut(s) 122
PspXI VCTCGAGB 1 cut(s) 680
SapI GCTCTTC 1 cut(s) 612
SaqAI TTAA 7 cut(s) 162, 384, 564, 708, 750, 819, 996
SatI GCNGC 7 cut(s) 623, 789, 849, 922, 925, 961, 969
Sau3AI GATC 1 cut(s) 910
Sau96I GGNCC 1 cut(s) 122
ScrFI CCNGG 1 cut(s) 599
SduI GDGCHC 2 cut(s) 427, 904
Sfr274I CTCGAG 1 cut(s) 680
SinI GGWCC 1 cut(s) 122
SlaI CTCGAG 1 cut(s) 680
SmlI CTYRAG 2 cut(s) 389, 680
SmoI CTYRAG 2 cut(s) 389, 680
Sse9I AATT 6 cut(s) 135, 233, 248, 317, 442, 476
SsiI CCGC 8 cut(s) 495, 622, 698, 828, 849, 921, 924, 969
SspI AATATT 1 cut(s) 419
SspMI CTAG 1 cut(s) 81
StyD4I CCNGG 1 cut(s) 597
TaiI ACGT 3 cut(s) 405, 757, 936
TaqI TCGA 8 cut(s) 216, 229, 238, 568, 681, 727, 780, 984
TasI AATT 6 cut(s) 135, 233, 248, 317, 442, 476
TauI GCSGC 5 cut(s) 625, 851, 924, 927, 971
TfiI GAWTC 5 cut(s) 112, 363, 488, 640, 1033
Tru1I TTAA 7 cut(s) 162, 384, 564, 708, 750, 819, 996
Tru9I TTAA 7 cut(s) 162, 384, 564, 708, 750, 819, 996
TscAI CASTG 2 cut(s) 270, 707
TseFI GTSAC 3 cut(s) 403, 601, 739
TseI GCWGC 2 cut(s) 788, 960
Tsp45I GTSAC 3 cut(s) 403, 601, 739
TspDTI ATGAA 4 cut(s) 125, 202, 766, 877
TspGWI ACGGA 3 cut(s) 31, 887, 970
TspRI CASTG 2 cut(s) 270, 707
VpaK11BI GGWCC 1 cut(s) 122
XapI RAATTY 1 cut(s) 233
XceI RCATGY 2 cut(s) 632, 720
XhoI CTCGAG 1 cut(s) 680
XspI CTAG 1 cut(s) 81
ZraI GACGTC 2 cut(s) 403, 934
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.