Rroxscaffold_7G00162110
ERF Family

Phosphorylase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000829
Physical Location & Seq
Reverse (-)
4733928 .. 4738105
4178 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00162110.1

Sequence Viewer

Length: 1608 bp
ATGGGAAGTTCATCAGTAGTAGGTTGGACTCTTCTTTATGCTATCTTGGCTCTTATCACAACCCAACAAAACTACTCAAATGCTGCCTTGTTGCCGGAGACACTCAAGTTGATCGAAGCGGCCAACGCCGATGGACCTTATTTGGGGTTTGGAACCATTGCTACAAAGAAAGTCATATTAGTTATGACAGGACTGGGAATGATTAATGCAGGAATAACCACTCAGCTTTTACTAAGCATGTTCAGTGTAGAAGGAGTGGTGCATTATGGCACAGCTGGCAATGCGAATCCAACCTTCAACCTTGCAGATGTGGTCATTCCTCAGTATTGGTCCCATACTGCTCTTTGGACCTGGCAAAGATATGGACATGGGCCTGAAGATGATTTGCCTCTAAATTCAATGAGAGATATTGGGTGCTTGAACCTTGCAAGTTACACAGTGAATGTGACAGATGGGAGCTCATATGATAACTTGTTGAACAATATTTGGTATCAGTCAGAGGAAGTCTTCCCCATTGATGGAACTCCAGAACAAAGAGAGTTTACCTTTTGGGTCCCTGTTCATCCCTACTACTATGAAATCTCCAAAAATCTAGAGGACCTGAAACTAGAAGGTTGCCTAAACTCAACATCATGTTTGTCACATACACCAAAAGTAGCAAGAGTTCAAAGGGGAACAAGTGCAAGCATTTACCTGGACAATGCAGCTTACCGTGACTTCATATATGATAAGTTCAACGTAACTCCGGTGGACATGGAAAGTGCTTCTGTTGCTTTGATTTGCCTTCAGCAAAGGGTGCCCTTCATAGCCATCAGGGCTCTCTCTGACTTGGCCGGCGGTGGCTCTGCTGATTCCAATGAGGCTGACACATTCAATACTCTCGCTTCCCATAATTCAGCCACAGTTGTTGTTGAATTTATCAAACACTTGATGCTTAAACACACAAATGATGCATTGTCTGCAGATACACAGAAGTTGATCGACCAGGCCAACAAGAGTGGCCCGTACTTGGGCTTGGAGTGGTTCACTACGGCATATCTGGCAATGCAAACCCATCCTTTAACATTGCAGATGTGCTCATTCCTCAGTATTAGTCCCATAGAGCTCTTTGGAATTGGCAGAGATATGGAAACGGGCCTCAAGATGAACTACTCCTTGAATCACAAGGAGACTACACGAGAAATTGGCTATTTCAAATTTTCAAATTATACAGTGAATGTGACAGGTGGCAGCTCATTTGATAATCTCTTGAACAACATTTGGTATCAACCTGAAGAAGTCTTCCCTATTGATGGAACTCCAAAACAAAGACACCATGCCTTCTGGGTTGCTGTTGATCCCTTATTCCCTTCTACTATGAAATCTCCAAAAAGCTTGAACTTCTTGTATGACAAGTTCAACATAAGCCCTTTGGACATGGAAAGCACTTCTGTTGCCTTGATATGTATTCAGCAAAGGGTGCCTTTCATTGCAATCAGGGCTCTCTCTTCTGGTCTAACTGGTGATGGCTCCGATGATCCCACTGAAGCTGGCAAGTTCATTAGACGTGCTTCAAAAAATTCAGTTACAGCTGTTGTGGAATTTATCAAACAGCTATCAATTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNP_UDP_1

Protein Analysis

535

Amino Acids

59.24

Weight (kDa)

5.18

Isoelectric Point (pI)

32.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNP_UDP_1 PF01048 49 - 308 3.7e-27 Phosphorylase superfamily
PNP_UDP_1 PF01048 457 - 530 1.6e-06 Phosphorylase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 796, 1459
AciI CCGC 2 cut(s) 119, 837
AclWI GGATC 2 cut(s) 1331, 1511
AcoI YGGCCR 2 cut(s) 120, 831
AcsI RAATTY 5 cut(s) 394, 914, 1196, 1558, 1580
AcuI CTGAAG 4 cut(s) 396, 770, 1293, 1545
AfaI GTAC 1 cut(s) 1007
AfiI CCNNNNNNNGG 5 cut(s) 143, 518, 1009, 1010, 1292
AjiI CACGTC 1 cut(s) 1547
AjnI CCWGG 3 cut(s) 350, 693, 984
Alw21I GWGCWC 3 cut(s) 461, 1079, 1107
Alw26I GTCTC 2 cut(s) 92, 1163
AlwI GGATC 2 cut(s) 1331, 1511
AoxI GGCC 6 cut(s) 120, 371, 831, 987, 1000, 1135
ApeKI GCWGC 3 cut(s) 83, 704, 1230
ApoI RAATTY 5 cut(s) 394, 914, 1196, 1558, 1580
AseI ATTAAT 1 cut(s) 204
AspS9I GGNCC 8 cut(s) 134, 330, 348, 371, 553, 598, 1001, 1135
AsuHPI GGTGA 1 cut(s) 1514
AvaII GGWCC 5 cut(s) 134, 330, 348, 553, 598
BaeGI GKGCMC 1 cut(s) 801
BanI GGYRCC 2 cut(s) 796, 1459
BanII GRGCYC 4 cut(s) 461, 820, 1107, 1483
BauI CACGAG 1 cut(s) 1176
BbsI GAAGAC 2 cut(s) 499, 1273
Bbv12I GWGCWC 3 cut(s) 461, 1079, 1107
BbvI GCAGC 3 cut(s) 70, 716, 1242
BccI CCATC 7 cut(s) 125, 446, 512, 818, 1062, 1286, 1499
BceAI ACGGC 1 cut(s) 1047
BciT130I CCWGG 3 cut(s) 352, 695, 986
BcoDI GTCTC 2 cut(s) 92, 1163
BfaI CTAG 2 cut(s) 593, 608
BfmI CTRYAG 1 cut(s) 960
BglI GCCNNNNNGGC 1 cut(s) 815
BisI GCNGC 4 cut(s) 84, 120, 705, 1231
BlsI GCNGC 4 cut(s) 85, 121, 706, 1232
Bme1390I CCNGG 3 cut(s) 352, 695, 986
Bme18I GGWCC 5 cut(s) 134, 330, 348, 553, 598
BmgBI CACGTC 1 cut(s) 1547
BmgT120I GGNCC 8 cut(s) 134, 330, 348, 371, 553, 598, 1001, 1135
BmiI GGNNCC 7 cut(s) 154, 332, 554, 555, 798, 1461, 1510
BmrFI CCNGG 3 cut(s) 352, 695, 986
BmrI ACTGGG 1 cut(s) 203
BmsI GCATC 2 cut(s) 921, 940
BmuI ACTGGG 1 cut(s) 203
BpiI GAAGAC 2 cut(s) 499, 1273
BpmI CTGGAG 1 cut(s) 510
BpuEI CTTGAG 2 cut(s) 89, 1124
BsaWI WCCGGW 1 cut(s) 745
Bsc4I CCNNNNNNNGG 5 cut(s) 143, 518, 1009, 1010, 1292
Bse118I RCCGGY 1 cut(s) 833
Bse1I ACTGG 2 cut(s) 198, 1504
Bse3DI GCAATG 5 cut(s) 156, 286, 1050, 1064, 1467
BseBI CCWGG 3 cut(s) 352, 695, 986
BseGI GGATG 2 cut(s) 562, 1054
BseLI CCNNNNNNNGG 5 cut(s) 143, 518, 1009, 1010, 1292
BseMI GCAATG 5 cut(s) 156, 286, 1050, 1064, 1467
BseMII CTCAG 3 cut(s) 236, 335, 1099
BseNI ACTGG 2 cut(s) 198, 1504
BseSI GKGCMC 1 cut(s) 801
BseXI GCAGC 3 cut(s) 70, 716, 1242
BshFI GGCC 6 cut(s) 122, 373, 833, 989, 1002, 1137
BshNI GGYRCC 2 cut(s) 796, 1459
BsiHKAI GWGCWC 3 cut(s) 461, 1079, 1107
BsiSI CCGG 3 cut(s) 95, 746, 834
BslFI GGGAC 3 cut(s) 316, 539, 1080
BslI CCNNNNNNNGG 5 cut(s) 143, 518, 1009, 1010, 1292
BsmAI GTCTC 2 cut(s) 92, 1163
BsmFI GGGAC 3 cut(s) 316, 539, 1080
BsnI GGCC 6 cut(s) 122, 373, 833, 989, 1002, 1137
Bsp1286I GDGCHC 6 cut(s) 461, 801, 820, 1079, 1107, 1483
Bsp143I GATC 4 cut(s) 111, 978, 1336, 1516
BspACI CCGC 2 cut(s) 119, 837
BspANI GGCC 6 cut(s) 122, 373, 833, 989, 1002, 1137
BspCNI CTCAG 3 cut(s) 235, 334, 1098
BspLI GGNNCC 7 cut(s) 154, 332, 554, 555, 798, 1461, 1510
BspMAI CTGCAG 1 cut(s) 964
BspPI GGATC 2 cut(s) 1331, 1511
BspT107I GGYRCC 2 cut(s) 796, 1459
BsrDI GCAATG 5 cut(s) 156, 286, 1050, 1064, 1467
BsrFI RCCGGY 1 cut(s) 833
BsrI ACTGG 2 cut(s) 198, 1504
BssAI RCCGGY 1 cut(s) 833
BssMI GATC 4 cut(s) 111, 978, 1336, 1516
BssSI CACGAG 1 cut(s) 1176
Bst2BI CACGAG 1 cut(s) 1176
Bst2UI CCWGG 3 cut(s) 352, 695, 986
Bst4CI ACNGT 4 cut(s) 439, 713, 904, 1213
Bst6I CTCTTC 2 cut(s) 36, 1492
BstAPI GCANNNNNTGC 3 cut(s) 796, 959, 1459
BstC8I GCNNGC 4 cut(s) 277, 685, 835, 1531
BstDEI CTNAG 4 cut(s) 222, 233, 321, 1085
BstF5I GGATG 2 cut(s) 562, 1054
BstKTI GATC 4 cut(s) 114, 981, 1339, 1519
BstMAI GTCTC 2 cut(s) 92, 1163
BstMBI GATC 4 cut(s) 111, 978, 1336, 1516
BstNI CCWGG 3 cut(s) 352, 695, 986
BstNSI RCATGY 1 cut(s) 241
BstSCI CCNGG 3 cut(s) 350, 693, 984
BstSFI CTRYAG 1 cut(s) 960
BstSLI GKGCMC 1 cut(s) 801
BstV1I GCAGC 3 cut(s) 70, 716, 1242
BstV2I GAAGAC 2 cut(s) 499, 1273
BsuRI GGCC 6 cut(s) 122, 373, 833, 989, 1002, 1137
BtrI CACGTC 1 cut(s) 1547
BtsCI GGATG 2 cut(s) 562, 1054
BtsIMutI CAGTG 4 cut(s) 250, 444, 1218, 1521
Cac8I GCNNGC 4 cut(s) 277, 685, 835, 1531
Cfr10I RCCGGY 1 cut(s) 833
Cfr13I GGNCC 8 cut(s) 134, 330, 348, 371, 553, 598, 1001, 1135
Csp6I GTAC 1 cut(s) 1006
CspCI CAANNNNNGTGG 4 cut(s) 889, 924, 979, 1014
CviAII CATG 6 cut(s) 238, 368, 633, 754, 1316, 1417
CviQI GTAC 1 cut(s) 1006
DdeI CTNAG 4 cut(s) 222, 233, 321, 1085
DpnI GATC 4 cut(s) 113, 980, 1338, 1518
DpnII GATC 4 cut(s) 111, 978, 1336, 1516
EaeI YGGCCR 2 cut(s) 120, 831
Eam1104I CTCTTC 2 cut(s) 36, 1492
EarI CTCTTC 2 cut(s) 36, 1492
Ecl136II GAGCTC 2 cut(s) 459, 1105
Eco24I GRGCYC 4 cut(s) 461, 820, 1107, 1483
Eco47I GGWCC 5 cut(s) 134, 330, 348, 553, 598
Eco53kI GAGCTC 2 cut(s) 459, 1105
Eco57I CTGAAG 4 cut(s) 396, 770, 1293, 1545
EcoICRI GAGCTC 2 cut(s) 459, 1105
EcoO109I RGGNCCY 2 cut(s) 553, 598
EcoRII CCWGG 3 cut(s) 350, 693, 984
EcoT22I ATGCAT 1 cut(s) 955
EcoT38I GRGCYC 4 cut(s) 461, 820, 1107, 1483
FaeI CATG 6 cut(s) 241, 371, 636, 757, 1319, 1420
FalI AAGNNNNNCTT 2 cut(s) 1447, 1479
FaqI GGGAC 3 cut(s) 316, 539, 1080
FatI CATG 6 cut(s) 237, 367, 632, 753, 1315, 1416
FauNDI CATATG 1 cut(s) 463
Fnu4HI GCNGC 4 cut(s) 84, 120, 705, 1231
FokI GGATG 2 cut(s) 549, 1041
FriOI GRGCYC 4 cut(s) 461, 820, 1107, 1483
Fsp4HI GCNGC 4 cut(s) 84, 120, 705, 1231
FspBI CTAG 2 cut(s) 593, 608
GluI GCNGC 4 cut(s) 84, 120, 705, 1231
GsuI CTGGAG 1 cut(s) 510
HaeIII GGCC 6 cut(s) 122, 373, 833, 989, 1002, 1137
HapII CCGG 3 cut(s) 95, 746, 834
Hin1II CATG 6 cut(s) 241, 371, 636, 757, 1319, 1420
HindIII AAGCTT 1 cut(s) 1372
HinfI GANTC 4 cut(s) 28, 286, 851, 1159
HpaII CCGG 3 cut(s) 95, 746, 834
HphI GGTGA 1 cut(s) 1514
Hpy166II GTNNAC 3 cut(s) 543, 751, 1026
Hpy188I TCNGA 3 cut(s) 499, 826, 1513
Hpy188III TCNNGA 4 cut(s) 527, 593, 1141, 1249
Hpy8I GTNNAC 3 cut(s) 543, 751, 1026
HpyAV CCTTC 7 cut(s) 245, 304, 605, 794, 811, 1330, 1359
HpyCH4III ACNGT 4 cut(s) 439, 713, 904, 1213
HpyCH4IV ACGT 2 cut(s) 738, 1546
HpyF3I CTNAG 4 cut(s) 222, 233, 321, 1085
HpySE526I ACGT 2 cut(s) 738, 1546
Hsp92II CATG 6 cut(s) 241, 371, 636, 757, 1319, 1420
KflI GGGWCCC 1 cut(s) 553
KroI GCCGGC 1 cut(s) 833
KroNI GCCGGC 1 cut(s) 835
Kzo9I GATC 4 cut(s) 111, 978, 1336, 1516
LmnI GCTCC 2 cut(s) 456, 1514
Lsp1109I GCAGC 3 cut(s) 70, 716, 1242
LweI GCATC 2 cut(s) 921, 940
MaeI CTAG 2 cut(s) 593, 608
MaeII ACGT 2 cut(s) 738, 1546
MaeIII GTNAC 7 cut(s) 431, 445, 639, 713, 739, 1219, 1564
MalI GATC 4 cut(s) 113, 980, 1338, 1518
MboI GATC 4 cut(s) 111, 978, 1336, 1516
MboII GAAGA 6 cut(s) 23, 389, 499, 1273, 1286, 1479
MhlI GDGCHC 6 cut(s) 461, 801, 820, 1079, 1107, 1483
MlyI GAGTC 1 cut(s) 22
MmeI TCCRAC 2 cut(s) 5, 314
MnlI CCTC 7 cut(s) 330, 399, 493, 589, 853, 1094, 1148
Mph1103I ATGCAT 1 cut(s) 955
MroNI GCCGGC 1 cut(s) 833
MseI TTAA 3 cut(s) 204, 936, 1061
MslI CAYNNNNRTG 1 cut(s) 945
MspA1I CMGCKG 2 cut(s) 275, 1571
MspI CCGG 3 cut(s) 95, 746, 834
MspR9I CCNGG 3 cut(s) 352, 695, 986
MvaI CCWGG 3 cut(s) 352, 695, 986
NaeI GCCGGC 1 cut(s) 835
NdeI CATATG 1 cut(s) 463
NdeII GATC 4 cut(s) 111, 978, 1336, 1516
NgoMIV GCCGGC 1 cut(s) 833
NlaIII CATG 6 cut(s) 241, 371, 636, 757, 1319, 1420
NlaIV GGNNCC 7 cut(s) 154, 332, 554, 555, 798, 1461, 1510
NmuCI GTSAC 4 cut(s) 445, 639, 713, 1219
NsiI ATGCAT 1 cut(s) 955
NspI RCATGY 1 cut(s) 241
PdiI GCCGGC 1 cut(s) 835
PfeI GAWTC 3 cut(s) 286, 851, 1159
PkrI GCNGC 4 cut(s) 85, 121, 706, 1232
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
PpuMI RGGWCCY 2 cut(s) 553, 598
PshBI ATTAAT 1 cut(s) 204
Psp124BI GAGCTC 2 cut(s) 461, 1107
Psp5II RGGWCCY 2 cut(s) 553, 598
Psp6I CCWGG 3 cut(s) 350, 693, 984
PspGI CCWGG 3 cut(s) 350, 693, 984
PspN4I GGNNCC 7 cut(s) 154, 332, 554, 555, 798, 1461, 1510
PspPI GGNCC 8 cut(s) 134, 330, 348, 371, 553, 598, 1001, 1135
PspPPI RGGWCCY 2 cut(s) 553, 598
PsrI GAACNNNNNNTAC 6 cut(s) 145, 177, 648, 680, 1379, 1411
PstI CTGCAG 1 cut(s) 964
PvuII CAGCTG 2 cut(s) 275, 1571
RsaI GTAC 1 cut(s) 1007
RsaNI GTAC 1 cut(s) 1006
RseI CAYNNNNRTG 1 cut(s) 945
SacI GAGCTC 2 cut(s) 461, 1107
SaqAI TTAA 3 cut(s) 204, 936, 1061
SatI GCNGC 4 cut(s) 84, 120, 705, 1231
Sau3AI GATC 4 cut(s) 111, 978, 1336, 1516
Sau96I GGNCC 8 cut(s) 134, 330, 348, 371, 553, 598, 1001, 1135
SchI GAGTC 1 cut(s) 22
ScrFI CCNGG 3 cut(s) 352, 695, 986
SduI GDGCHC 6 cut(s) 461, 801, 820, 1079, 1107, 1483
SfaNI GCATC 2 cut(s) 921, 940
SfcI CTRYAG 1 cut(s) 960
SinI GGWCC 5 cut(s) 134, 330, 348, 553, 598
SmiMI CAYNNNNRTG 1 cut(s) 945
SmlI CTYRAG 2 cut(s) 104, 1139
SmoI CTYRAG 2 cut(s) 104, 1139
SsiI CCGC 2 cut(s) 119, 837
SspI AATATT 1 cut(s) 484
SspMI CTAG 2 cut(s) 593, 608
SstI GAGCTC 2 cut(s) 461, 1107
StyD4I CCNGG 3 cut(s) 350, 693, 984
TaaI ACNGT 4 cut(s) 439, 713, 904, 1213
TaiI ACGT 2 cut(s) 741, 1549
TaqI TCGA 2 cut(s) 114, 981
TauI GCSGC 1 cut(s) 122
TfiI GAWTC 3 cut(s) 286, 851, 1159
Tru1I TTAA 3 cut(s) 204, 936, 1061
Tru9I TTAA 3 cut(s) 204, 936, 1061
TscAI CASTG 4 cut(s) 250, 444, 1218, 1528
TseFI GTSAC 4 cut(s) 445, 639, 713, 1219
TseI GCWGC 3 cut(s) 83, 704, 1230
Tsp45I GTSAC 4 cut(s) 445, 639, 713, 1219
TspDTI ATGAA 8 cut(s) 551, 591, 709, 793, 1160, 1373, 1456, 1528
TspRI CASTG 4 cut(s) 250, 444, 1218, 1528
VpaK11BI GGWCC 5 cut(s) 134, 330, 348, 553, 598
VspI ATTAAT 1 cut(s) 204
XapI RAATTY 5 cut(s) 394, 914, 1196, 1558, 1580
XbaI TCTAGA 1 cut(s) 592
XceI RCATGY 1 cut(s) 241
XspI CTAG 2 cut(s) 593, 608
Zsp2I ATGCAT 1 cut(s) 955
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.