Rroxscaffold_2G00150370

Bark storage protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000829
Physical Location & Seq
Forward (+)
87783194 .. 87784902
1709 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00150370.1

Sequence Viewer

Length: 1047 bp
ATGGAGAGCCATTTGAAGATGGTGTTAGTGGTTTTCTTTGTATTGGTTTTAGGGATCAGCACTAGAACAGTTGATGGTGCAGTTTCTCAAAGTACCATGAAAAAGATTGACAGGGTGAATAGGAAAGGTCCGTACTTGGGTATTATAGTACCAAATTCCTTTGAGCTCACCCCTCTTCTTCAATCGGCAAGCTTTGTGACTGATCAGAAGCTTCCCAGTTTGGATTTTTCAGGAAGAAGGTTTCGATTTGGTAGATTGGATAATCAAAGTGTTGTAATTGCTATGACAGGGTTGAGCATGCTTAATGCAGGTGTAACAACTCAATTATTGCTAACCCTATTCAAGATGAAAGGGGTTGTGCACTATGGAATTGCAGGAAATGCAGATCCTCAACTCCAAATTGGAGATGTCACTATCCCTCGGTATTGGGCTCATACAGGCCTTTGGAATTGGCAGAGGTTTGGGGATGGTCCTGATAATTTGTTATCCTTGGAGTCATTCGGAGACTACACTAGGGATGTTGGTTACATAAAATTTTCCGAATTCAACAACGAAACAGAAACTGAGAAGTCTGTTGACAATTTTCTGAACAATGCATGGTACCAACCGGAAGAAATCTTCCCAGTTTATGGCACTCCTGAAGTTCGGCAGCACGCCTTTTGGGTCTCCGTAAACAAAAATTATTTTGCACTTGCTCAACAACTACTGGATTTGAAGTTAGAGAGTTGCGTGAATACTACTTGTTTACCAAGAGCACCAATAGTGTTGAGAGTGCAAAGGGGGATCAGTGCCAATGTGTTTGTGGACAATAGTGCATATAGACAATTCTTGAACTCCAAGTTTAATGCCACTGCAATTGACATGGAAAGTGCTGCAGTAGCTCTGGTCTGTGAACAGCAAAAGACACCTTTCATTGTGATTAGGGCGCTATCAGATTTGGCCGGGGGAGGCTCCTCTGTGTCGAATGAAGCCTCTATTTTCGCATCATTGGCAGCTCAAAATGCAGTCACCGTTGTGCTCAAATTCATCTCCCTGTTGTCTTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNP_UDP_1

Protein Analysis

348

Amino Acids

38.54

Weight (kDa)

6.91

Isoelectric Point (pI)

26.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNP_UDP_1 PF01048 46 - 343 2.3e-29 Phosphorylase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 299
Acc36I ACCTGC 1 cut(s) 299
Acc65I GGTACC 1 cut(s) 600
AccB1I GGYRCC 1 cut(s) 600
AccB7I CCANNNNNTGG 1 cut(s) 629
AclWI GGATC 3 cut(s) 62, 380, 791
AcoI YGGCCR 1 cut(s) 939
AcsI RAATTY 4 cut(s) 154, 533, 542, 1022
AcuI CTGAAG 1 cut(s) 660
AfaI GTAC 4 cut(s) 94, 134, 150, 602
AfiI CCNNNNNNNGG 2 cut(s) 137, 629
AgsI TTSAA 6 cut(s) 16, 182, 343, 547, 715, 832
AleI CACNNNNGTG 1 cut(s) 1013
AluBI AGCT 5 cut(s) 166, 192, 211, 881, 995
AluI AGCT 5 cut(s) 166, 192, 211, 881, 995
Alw21I GWGCWC 4 cut(s) 168, 363, 757, 1020
Alw26I GTCTC 2 cut(s) 498, 670
Alw44I GTGCAC 1 cut(s) 359
AlwI GGATC 3 cut(s) 62, 380, 791
AlwNI CAGNNNCTG 1 cut(s) 563
AoxI GGCC 2 cut(s) 439, 939
ApaLI GTGCAC 1 cut(s) 359
ApeKI GCWGC 3 cut(s) 649, 872, 992
ApoI RAATTY 4 cut(s) 154, 533, 542, 1022
Asp718I GGTACC 1 cut(s) 600
AspLEI GCGC 1 cut(s) 928
AspS9I GGNCC 2 cut(s) 128, 470
AsuC2I CCSGG 1 cut(s) 943
AsuHPI GGTGA 3 cut(s) 127, 160, 1000
AvaII GGWCC 2 cut(s) 128, 470
BaeGI GKGCMC 1 cut(s) 363
BanI GGYRCC 1 cut(s) 600
BanII GRGCYC 2 cut(s) 168, 433
BbsI GAAGAC 1 cut(s) 1032
Bbv12I GWGCWC 4 cut(s) 168, 363, 757, 1020
BbvI GCAGC 3 cut(s) 661, 859, 1004
BccI CCATC 3 cut(s) 13, 68, 461
BclI TGATCA 1 cut(s) 202
BcnI CCSGG 1 cut(s) 943
BcoDI GTCTC 2 cut(s) 498, 670
BfaI CTAG 3 cut(s) 63, 513, 1045
BfmI CTRYAG 1 cut(s) 873
BfoI RGCGCY 1 cut(s) 929
BfuAI ACCTGC 1 cut(s) 299
BisI GCNGC 3 cut(s) 650, 873, 993
BlsI GCNGC 3 cut(s) 651, 874, 994
Bme1390I CCNGG 1 cut(s) 943
Bme18I GGWCC 2 cut(s) 128, 470
BmgT120I GGNCC 2 cut(s) 128, 470
BmiI GGNNCC 2 cut(s) 602, 952
BmrFI CCNGG 1 cut(s) 943
BmrI ACTGGG 2 cut(s) 210, 617
BmsI GCATC 1 cut(s) 992
BmuI ACTGGG 2 cut(s) 210, 617
BpiI GAAGAC 1 cut(s) 1032
BpuMI CCSGG 1 cut(s) 943
BsaI GGTCTC 1 cut(s) 670
BsaJI CCNNGG 3 cut(s) 419, 489, 942
BsaWI WCCGGW 1 cut(s) 607
Bsc4I CCNNNNNNNGG 2 cut(s) 137, 629
Bse1I ACTGG 3 cut(s) 216, 623, 711
BseDI CCNNGG 3 cut(s) 419, 489, 942
BseGI GGATG 2 cut(s) 472, 523
BseLI CCNNNNNNNGG 2 cut(s) 137, 629
BseMII CTCAG 1 cut(s) 555
BseNI ACTGG 3 cut(s) 216, 623, 711
BseRI GAGGAG 1 cut(s) 943
BseSI GKGCMC 1 cut(s) 363
BseXI GCAGC 3 cut(s) 661, 859, 1004
BsgI GTGCAG 1 cut(s) 99
BshFI GGCC 2 cut(s) 441, 941
BshNI GGYRCC 1 cut(s) 600
BsiHKAI GWGCWC 4 cut(s) 168, 363, 757, 1020
BsiSI CCGG 2 cut(s) 608, 942
BslI CCNNNNNNNGG 2 cut(s) 137, 629
BsmAI GTCTC 2 cut(s) 498, 670
BsnI GGCC 2 cut(s) 441, 941
Bso31I GGTCTC 1 cut(s) 670
Bsp1286I GDGCHC 5 cut(s) 168, 363, 433, 757, 1020
Bsp143I GATC 4 cut(s) 54, 202, 385, 783
BspANI GGCC 2 cut(s) 441, 941
BspCNI CTCAG 1 cut(s) 556
BspLI GGNNCC 2 cut(s) 602, 952
BspMAI CTGCAG 1 cut(s) 877
BspMI ACCTGC 1 cut(s) 299
BspPI GGATC 3 cut(s) 62, 380, 791
BspT107I GGYRCC 1 cut(s) 600
BspTNI GGTCTC 1 cut(s) 670
BsrI ACTGG 3 cut(s) 216, 623, 711
BssECI CCNNGG 3 cut(s) 419, 489, 942
BssMI GATC 4 cut(s) 54, 202, 385, 783
BssT1I CCWWGG 1 cut(s) 489
Bst4CI ACNGT 2 cut(s) 70, 1012
Bst6I CTCTTC 1 cut(s) 180
BstAPI GCANNNNNTGC 1 cut(s) 380
BstC8I GCNNGC 3 cut(s) 190, 299, 654
BstDEI CTNAG 1 cut(s) 564
BstF5I GGATG 2 cut(s) 472, 523
BstH2I RGCGCY 1 cut(s) 929
BstHHI GCGC 1 cut(s) 928
BstKTI GATC 4 cut(s) 57, 205, 388, 786
BstMAI GTCTC 2 cut(s) 498, 670
BstMBI GATC 4 cut(s) 54, 202, 385, 783
BstMWI GCNNNNNNNGC 4 cut(s) 380, 878, 989, 1001
BstNSI RCATGY 1 cut(s) 301
BstSCI CCNGG 1 cut(s) 941
BstSFI CTRYAG 1 cut(s) 873
BstSLI GKGCMC 1 cut(s) 363
BstV1I GCAGC 3 cut(s) 661, 859, 1004
BstV2I GAAGAC 1 cut(s) 1032
BstX2I RGATCY 1 cut(s) 385
BstYI RGATCY 1 cut(s) 385
BsuRI GGCC 2 cut(s) 441, 941
BtsCI GGATG 2 cut(s) 472, 523
BtsI GCAGTG 1 cut(s) 849
BtsIMutI CAGTG 2 cut(s) 793, 849
BveI ACCTGC 1 cut(s) 299
Cac8I GCNNGC 3 cut(s) 190, 299, 654
CaiI CAGNNNCTG 1 cut(s) 563
CfoI GCGC 1 cut(s) 928
Cfr13I GGNCC 2 cut(s) 128, 470
Csp6I GTAC 4 cut(s) 93, 133, 149, 601
CspCI CAANNNNNGTGG 2 cut(s) 838, 873
CviAII CATG 4 cut(s) 97, 298, 597, 862
CviQI GTAC 4 cut(s) 93, 133, 149, 601
DdeI CTNAG 1 cut(s) 564
DpnI GATC 4 cut(s) 56, 204, 387, 785
DpnII GATC 4 cut(s) 54, 202, 385, 783
EaeI YGGCCR 1 cut(s) 939
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
Ecl136II GAGCTC 1 cut(s) 166
Eco130I CCWWGG 1 cut(s) 489
Eco147I AGGCCT 1 cut(s) 441
Eco24I GRGCYC 2 cut(s) 168, 433
Eco31I GGTCTC 1 cut(s) 670
Eco47I GGWCC 2 cut(s) 128, 470
Eco53kI GAGCTC 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 660
EcoICRI GAGCTC 1 cut(s) 166
EcoRI GAATTC 1 cut(s) 542
EcoT14I CCWWGG 1 cut(s) 489
EcoT22I ATGCAT 1 cut(s) 598
EcoT38I GRGCYC 2 cut(s) 168, 433
ErhI CCWWGG 1 cut(s) 489
FaeI CATG 4 cut(s) 100, 301, 600, 865
FatI CATG 4 cut(s) 96, 297, 596, 861
FbaI TGATCA 1 cut(s) 202
Fnu4HI GCNGC 3 cut(s) 650, 873, 993
FokI GGATG 2 cut(s) 479, 530
FriOI GRGCYC 2 cut(s) 168, 433
Fsp4HI GCNGC 3 cut(s) 650, 873, 993
FspBI CTAG 3 cut(s) 63, 513, 1045
GlaI GCGC 1 cut(s) 927
GluI GCNGC 3 cut(s) 650, 873, 993
HaeII RGCGCY 1 cut(s) 929
HaeIII GGCC 2 cut(s) 441, 941
HapII CCGG 2 cut(s) 608, 942
HhaI GCGC 1 cut(s) 928
Hin1II CATG 4 cut(s) 100, 301, 600, 865
Hin6I GCGC 1 cut(s) 926
HinP1I GCGC 1 cut(s) 926
HincII GTYRAC 1 cut(s) 577
HindII GTYRAC 1 cut(s) 577
HindIII AAGCTT 2 cut(s) 190, 209
HinfI GANTC 1 cut(s) 494
HpaII CCGG 2 cut(s) 608, 942
HphI GGTGA 3 cut(s) 127, 160, 1000
Hpy166II GTNNAC 6 cut(s) 361, 577, 673, 746, 805, 893
Hpy188I TCNGA 5 cut(s) 207, 503, 541, 588, 934
Hpy188III TCNNGA 5 cut(s) 231, 343, 473, 638, 829
Hpy8I GTNNAC 6 cut(s) 361, 577, 673, 746, 805, 893
HpyAV CCTTC 1 cut(s) 231
HpyCH4III ACNGT 2 cut(s) 70, 1012
HpyF10VI GCNNNNNNNGC 4 cut(s) 380, 878, 989, 1001
HpyF3I CTNAG 1 cut(s) 564
Hsp92II CATG 4 cut(s) 100, 301, 600, 865
HspAI GCGC 1 cut(s) 926
KpnI GGTACC 1 cut(s) 604
Ksp22I TGATCA 1 cut(s) 202
Kzo9I GATC 4 cut(s) 54, 202, 385, 783
LmnI GCTCC 1 cut(s) 956
Lsp1109I GCAGC 3 cut(s) 661, 859, 1004
LweI GCATC 1 cut(s) 992
MaeI CTAG 3 cut(s) 63, 513, 1045
MaeIII GTNAC 5 cut(s) 196, 313, 409, 524, 1006
MalI GATC 4 cut(s) 56, 204, 387, 785
MboI GATC 4 cut(s) 54, 202, 385, 783
MboII GAAGA 7 cut(s) 28, 167, 170, 246, 610, 623, 1032
MfeI CAATTG 1 cut(s) 855
MflI RGATCY 1 cut(s) 385
MhlI GDGCHC 5 cut(s) 168, 363, 433, 757, 1020
MlyI GAGTC 1 cut(s) 503
MnlI CCTC 7 cut(s) 183, 399, 429, 450, 941, 964, 982
Mph1103I ATGCAT 1 cut(s) 598
MseI TTAA 2 cut(s) 303, 843
MslI CAYNNNNRTG 1 cut(s) 1013
MspI CCGG 2 cut(s) 608, 942
MspR9I CCNGG 1 cut(s) 943
MunI CAATTG 1 cut(s) 855
MwoI GCNNNNNNNGC 4 cut(s) 380, 878, 989, 1001
NciI CCSGG 1 cut(s) 943
NdeII GATC 4 cut(s) 54, 202, 385, 783
NlaIII CATG 4 cut(s) 100, 301, 600, 865
NlaIV GGNNCC 2 cut(s) 602, 952
NmuCI GTSAC 3 cut(s) 196, 409, 1006
NsiI ATGCAT 1 cut(s) 598
NspI RCATGY 1 cut(s) 301
OliI CACNNNNGTG 1 cut(s) 1013
PaeI GCATGC 1 cut(s) 301
PaqCI CACCTGC 1 cut(s) 299
PceI AGGCCT 1 cut(s) 441
PflMI CCANNNNNTGG 1 cut(s) 629
PkrI GCNGC 3 cut(s) 651, 874, 994
PleI GAGTC 1 cut(s) 502
PpsI GAGTC 1 cut(s) 502
Psp124BI GAGCTC 1 cut(s) 168
PspN4I GGNNCC 2 cut(s) 602, 952
PspPI GGNCC 2 cut(s) 128, 470
PstI CTGCAG 1 cut(s) 877
PstNI CAGNNNCTG 1 cut(s) 563
PsuI RGATCY 1 cut(s) 385
RsaI GTAC 4 cut(s) 94, 134, 150, 602
RsaNI GTAC 4 cut(s) 93, 133, 149, 601
RseI CAYNNNNRTG 1 cut(s) 1013
SacI GAGCTC 1 cut(s) 168
SaqAI TTAA 2 cut(s) 303, 843
SatI GCNGC 3 cut(s) 650, 873, 993
Sau3AI GATC 4 cut(s) 54, 202, 385, 783
Sau96I GGNCC 2 cut(s) 128, 470
SchI GAGTC 1 cut(s) 503
ScrFI CCNGG 1 cut(s) 943
SduI GDGCHC 5 cut(s) 168, 363, 433, 757, 1020
SfaNI GCATC 1 cut(s) 992
SfcI CTRYAG 1 cut(s) 873
SinI GGWCC 2 cut(s) 128, 470
SmiMI CAYNNNNRTG 1 cut(s) 1013
SphI GCATGC 1 cut(s) 301
SseBI AGGCCT 1 cut(s) 441
SspMI CTAG 3 cut(s) 63, 513, 1045
SstI GAGCTC 1 cut(s) 168
StuI AGGCCT 1 cut(s) 441
StyD4I CCNGG 1 cut(s) 941
StyI CCWWGG 1 cut(s) 489
TaaI ACNGT 2 cut(s) 70, 1012
TaqI TCGA 2 cut(s) 244, 962
Tru1I TTAA 2 cut(s) 303, 843
Tru9I TTAA 2 cut(s) 303, 843
TscAI CASTG 2 cut(s) 793, 856
TseFI GTSAC 3 cut(s) 196, 409, 1006
TseI GCWGC 3 cut(s) 649, 872, 992
Tsp45I GTSAC 3 cut(s) 196, 409, 1006
TspDTI ATGAA 5 cut(s) 113, 362, 901, 981, 1015
TspGWI ACGGA 2 cut(s) 120, 658
TspRI CASTG 2 cut(s) 793, 856
Van91I CCANNNNNTGG 1 cut(s) 629
VneI GTGCAC 1 cut(s) 359
VpaK11BI GGWCC 2 cut(s) 128, 470
XapI RAATTY 4 cut(s) 154, 533, 542, 1022
XceI RCATGY 1 cut(s) 301
XcmI CCANNNNNNNNNTGG 1 cut(s) 799
XspI CTAG 3 cut(s) 63, 513, 1045
Zsp2I ATGCAT 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.