Rmu_sc0036553.1_g000001
ERF Family

Phosphorylase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0036553.1
OG0000829
Physical Location & Seq
Forward (+)
836 .. 1823
988 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0036553.1_g000001.1.cds

Sequence Viewer

Length: 642 bp
atgggggtagcttggccctgcgtagttgtttatgctgcgagcatcagcttgatgatgctcaacggagtagtgtgtgctgcactatctgaagaaacattggaattgatagccgaggccaacaagaatggcccttatttaggcttggtcattccaaattctttcgaaatggatcctctccttcaatctccgaacttcacttcctctaatttgactatagatttttctggaaggagatttcggtttggaacgattgctgaaaaaaaagtcatattagtcatgaccggacttgccatgattaatgcaggaataaccactcagctcttgctaagcttattcgatatagaaggcgtggtgcattatggcatagctggcaatgcaaacccaaatctccatcttgcagatgtggtcattcctcagtattgggcgcatactgctctttggaactggcagagatatggaaatggaccagaagatgagctaccccttgaatcacaaggagactacactagagacattggctacttaaaaattgcaaattatacagtcaatatgacagatagaagctcatacgacaacctgttgaacaatatctggtatcaaccggaggaagtcttccccgtcgatggaactccagaacaaaga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNP_UDP_1

Protein Analysis

214

Amino Acids

23.78

Weight (kDa)

4.48

Isoelectric Point (pI)

33.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 164, 177
AcsI RAATTY 1 cut(s) 154
AcuI CTGAAG 1 cut(s) 108
AfiI CCNNNNNNNGG 2 cut(s) 137, 623
AgsI TTSAA 3 cut(s) 182, 488, 583
AloI GAACNNNNNNTCC 2 cut(s) 182, 214
AluBI AGCT 7 cut(s) 11, 48, 319, 330, 368, 478, 564
AluI AGCT 7 cut(s) 11, 48, 319, 330, 368, 478, 564
Alw26I GTCTC 2 cut(s) 492, 504
AlwI GGATC 2 cut(s) 164, 177
AoxI GGCC 3 cut(s) 14, 114, 127
ApeKI GCWGC 2 cut(s) 35, 77
ApoI RAATTY 1 cut(s) 154
AseI ATTAAT 1 cut(s) 297
AspLEI GCGC 1 cut(s) 427
AspS9I GGNCC 3 cut(s) 15, 128, 464
AsuII TTCGAA 1 cut(s) 162
AvaII GGWCC 1 cut(s) 464
BamHI GGATCC 1 cut(s) 169
BarI GAAGNNNNNNTAC 2 cut(s) 462, 494
BbsI GAAGAC 1 cut(s) 604
BbvI GCAGC 2 cut(s) 22, 64
BccI CCATC 2 cut(s) 399, 617
BcoDI GTCTC 2 cut(s) 492, 504
BfaI CTAG 1 cut(s) 507
BfmI CTRYAG 1 cut(s) 213
BisI GCNGC 2 cut(s) 36, 78
BlpI GCTNAGC 1 cut(s) 326
BlsI GCNGC 2 cut(s) 37, 79
Bme18I GGWCC 1 cut(s) 464
BmgT120I GGNCC 3 cut(s) 15, 128, 464
BmiI GGNNCC 1 cut(s) 171
BmsI GCATC 2 cut(s) 45, 51
BpiI GAAGAC 1 cut(s) 604
BpmI CTGGAG 1 cut(s) 615
Bpu1102I GCTNAGC 1 cut(s) 326
Bpu14I TTCGAA 1 cut(s) 162
BsaJI CCNNGG 1 cut(s) 111
BsaWI WCCGGW 2 cut(s) 281, 601
Bsc4I CCNNNNNNNGG 2 cut(s) 137, 623
Bse1I ACTGG 1 cut(s) 449
Bse3DI GCAATG 1 cut(s) 379
BseDI CCNNGG 1 cut(s) 111
BseLI CCNNNNNNNGG 2 cut(s) 137, 623
BseMI GCAATG 1 cut(s) 379
BseMII CTCAG 2 cut(s) 329, 428
BseNI ACTGG 1 cut(s) 449
BseXI GCAGC 2 cut(s) 22, 64
BsgI GTGCAG 1 cut(s) 63
BshFI GGCC 3 cut(s) 16, 116, 129
BsiSI CCGG 2 cut(s) 282, 602
BslI CCNNNNNNNGG 2 cut(s) 137, 623
BsmAI GTCTC 2 cut(s) 492, 504
BsnI GGCC 3 cut(s) 16, 116, 129
Bsp119I TTCGAA 1 cut(s) 162
Bsp143I GATC 1 cut(s) 169
Bsp1720I GCTNAGC 1 cut(s) 326
BspANI GGCC 3 cut(s) 16, 116, 129
BspCNI CTCAG 2 cut(s) 328, 427
BspHI TCATGA 1 cut(s) 276
BspLI GGNNCC 1 cut(s) 171
BspPI GGATC 2 cut(s) 164, 177
BspT104I TTCGAA 1 cut(s) 162
BsrDI GCAATG 1 cut(s) 379
BsrI ACTGG 1 cut(s) 449
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 1 cut(s) 169
Bst4CI ACNGT 1 cut(s) 544
BstBI TTCGAA 1 cut(s) 162
BstC8I GCNNGC 2 cut(s) 40, 370
BstDEI CTNAG 3 cut(s) 315, 326, 414
BstENI CCTNNNNNAGG 1 cut(s) 135
BstHHI GCGC 1 cut(s) 427
BstKTI GATC 1 cut(s) 172
BstMAI GTCTC 2 cut(s) 492, 504
BstMBI GATC 1 cut(s) 169
BstMWI GCNNNNNNNGC 3 cut(s) 369, 374, 431
BstSFI CTRYAG 1 cut(s) 213
BstV1I GCAGC 2 cut(s) 22, 64
BstV2I GAAGAC 1 cut(s) 604
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
BsuRI GGCC 3 cut(s) 16, 116, 129
Cac8I GCNNGC 2 cut(s) 40, 370
CciI TCATGA 1 cut(s) 276
CfoI GCGC 1 cut(s) 427
Cfr13I GGNCC 3 cut(s) 15, 128, 464
CviAII CATG 2 cut(s) 277, 292
DdeI CTNAG 3 cut(s) 315, 326, 414
DpnI GATC 1 cut(s) 171
DpnII GATC 1 cut(s) 169
Eco47I GGWCC 1 cut(s) 464
Eco57I CTGAAG 1 cut(s) 108
EcoNI CCTNNNNNAGG 1 cut(s) 135
FaeI CATG 2 cut(s) 280, 295
FatI CATG 2 cut(s) 276, 291
Fnu4HI GCNGC 2 cut(s) 36, 78
Fsp4HI GCNGC 2 cut(s) 36, 78
FspBI CTAG 1 cut(s) 507
GlaI GCGC 1 cut(s) 426
GluI GCNGC 2 cut(s) 36, 78
GsuI CTGGAG 1 cut(s) 615
HaeIII GGCC 3 cut(s) 16, 116, 129
HapII CCGG 2 cut(s) 282, 602
HhaI GCGC 1 cut(s) 427
Hin1II CATG 2 cut(s) 280, 295
Hin6I GCGC 1 cut(s) 425
HinP1I GCGC 1 cut(s) 425
HindIII AAGCTT 1 cut(s) 328
HinfI GANTC 1 cut(s) 488
HpaII CCGG 2 cut(s) 282, 602
Hpy188I TCNGA 2 cut(s) 88, 189
Hpy188III TCNNGA 3 cut(s) 225, 277, 632
Hpy99I CGWCG 1 cut(s) 623
HpyAV CCTTC 3 cut(s) 188, 222, 338
HpyCH4III ACNGT 1 cut(s) 544
HpyCH4V TGCA 6 cut(s) 80, 302, 355, 377, 398, 533
HpyF10VI GCNNNNNNNGC 3 cut(s) 369, 374, 431
HpyF3I CTNAG 3 cut(s) 315, 326, 414
Hsp92II CATG 2 cut(s) 280, 295
HspAI GCGC 1 cut(s) 425
Kzo9I GATC 1 cut(s) 169
Lsp1109I GCAGC 2 cut(s) 22, 64
LweI GCATC 2 cut(s) 45, 51
MaeI CTAG 1 cut(s) 507
MalI GATC 1 cut(s) 171
MboI GATC 1 cut(s) 169
MboII GAAGA 3 cut(s) 101, 482, 604
MflI RGATCY 1 cut(s) 169
MluCI AATT 5 cut(s) 101, 154, 205, 528, 535
MnlI CCTC 5 cut(s) 106, 183, 211, 423, 598
MseI TTAA 2 cut(s) 297, 524
MspI CCGG 2 cut(s) 282, 602
MwoI GCNNNNNNNGC 3 cut(s) 369, 374, 431
NdeII GATC 1 cut(s) 169
NlaIII CATG 2 cut(s) 280, 295
NlaIV GGNNCC 1 cut(s) 171
NmeAIII GCCGAG 1 cut(s) 136
NspV TTCGAA 1 cut(s) 162
PagI TCATGA 1 cut(s) 276
PfeI GAWTC 1 cut(s) 488
PkrI GCNGC 2 cut(s) 37, 79
PshBI ATTAAT 1 cut(s) 297
PspN4I GGNNCC 1 cut(s) 171
PspPI GGNCC 3 cut(s) 15, 128, 464
PsuI RGATCY 1 cut(s) 169
SaqAI TTAA 2 cut(s) 297, 524
SatI GCNGC 2 cut(s) 36, 78
Sau3AI GATC 1 cut(s) 169
Sau96I GGNCC 3 cut(s) 15, 128, 464
SetI ASST 8 cut(s) 13, 50, 321, 332, 370, 480, 566, 579
SfaNI GCATC 2 cut(s) 45, 51
SfcI CTRYAG 1 cut(s) 213
SfuI TTCGAA 1 cut(s) 162
SinI GGWCC 1 cut(s) 464
Sse9I AATT 5 cut(s) 101, 154, 205, 528, 535
SspMI CTAG 1 cut(s) 507
TaaI ACNGT 1 cut(s) 544
TaqI TCGA 3 cut(s) 162, 336, 621
TasI AATT 5 cut(s) 101, 154, 205, 528, 535
TfiI GAWTC 1 cut(s) 488
Tru1I TTAA 2 cut(s) 297, 524
Tru9I TTAA 2 cut(s) 297, 524
TseI GCWGC 2 cut(s) 35, 77
TspGWI ACGGA 1 cut(s) 78
VpaK11BI GGWCC 1 cut(s) 464
VspI ATTAAT 1 cut(s) 297
XagI CCTNNNNNAGG 1 cut(s) 135
XapI RAATTY 1 cut(s) 154
XspI CTAG 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.