Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000829

Physical Location & Seq

Genomic Coordinates Reverse (-)

15012844 .. 15013890

Gene Structure 1047 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G008910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGTGAGCCATTTGAAGATGGTGTTAGTGGTTTTCTTTGTATTGGTTTTGGAGATTAGCACTAGAACAGTTGATGGTGCAGTTTCTCAAAGTACCATGAAAAAGATTGATAGGATGAATAGGAAAGGCCCATACTTGGGTATTATAGTACCAAATTCCTTTGAGCTCACCCCTCTTCTTCAATCTGCAAGCTTTGTGGCTGATCAGAAGCTTCCCAGTTTGGATTTTTCAGGAAGAAGGTTTCGATTAGGTAGATTGGATAATCAAAGTGTTGTAATTGCTATGACAGGGTTAAGCATGCTTAATGCAGGAGTAACAACTCAATTATTGCTTAGCCTATTCAAGGTGAAAGGGGTTGCGCACTATGGAATTGCAGGAAATGCAGATCCTCAACTCCAAATTGGAGATGTCACTATCCCTCAGTATTGGGCTCATACAGGACTTTGGAAATGGCAGAGGTTTGGGGATGGTCCTGATGATTTGATATCTTTGGAGTCATTCGGAGACTACACCAGGGATGTTGGTTACATAAAATTTTCCGAATTCAACAACAAAACAGAAACTGAGAAGTCTATTGATAATTTTCTGAACAATGCTTGGTACCAACCGGAAGAGATCTTCCCAGTTTATGGCACTCCTGAAGTTCGGCAGCACGCCTTTTGGGTCCCTGTAAACAAAAAATATTTTGCTCTTGCTCAACAACTTCAGGATTTGAAGTTAGAGGGTTGTGTGAATACAACTTGTTTACCAAGAACACCAATAGTGGTGAGAGTGCAAAGGGGGATGAGTGCCAATGTGTTTGTTGACAATAGTGCATATAGACAATTCTTGAACTCCAAGTTTAATGCCACTGCAATTGACATGGAAAGTGCTGCAGTAGCTCTGGTCTGTAAGCAGCAGAAGACACCCTTCATTGTGATTAGGGTGCTATCAGATTTGGCCGGGGGAGGTTCCTCTGTGTCGAATGAAGCCTCTACTTTCACATCATTGGCAGCTCAAAATGCAGTCATTGTCGTGCTCAAATTCATTTCCTTGTTGTCTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNP_UDP_1

Protein Analysis

348

Amino Acids

38.58

Weight (kDa)

8.85

Isoelectric Point (pI)

28.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PNP_UDP_1	PF01048	46 - 343	2.5e-29	Phosphorylase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28940 AT4G28940
fragaria_vesca	FvH4_1g05530 FvH4_2g35741 FvH4_2g35750 FvH4_2g35760 FvH4_2g35761 FvH4_2g35762
malus_domestica	MD15G1095100.v1.1 MD15G1095200.v1.1 MD15G1095300.v1.1 MD15G1191300.v1.1
prunus_persica	Prupe.1G450100_v2.0.a1 Prupe.1G450200_v2.0.a1 Prupe.7G225900_v2.0.a1 Prupe.7G225900_v2.0.a1 Prupe.7G225900_v2.0.a1
pyrus_communis	pycom15g08760 pycom15g08770 pycom15g17130
rosa_chinensis	RchiOBHm_Chr1g0336711 RchiOBHm_Chr2g0091231 RchiOBHm_Chr6g0259261 RchiOBHm_Chr6g0259271 RchiOBHm_Chr6g0306011 RchiOBHm_Chr6g0306021
rosa_laevigata	RLG00000010830 RLG00000010831 RLG00000010832 RLG00000014544 RLG00000016193 RLG00000029340
rosa_multiflora	Rmu_sc0002270.1_g000016 Rmu_sc0011974.1_g000004 Rmu_sc0020534.1_g000001 Rmu_sc0035114.1_g000001 Rmu_sc0036553.1_g000001 Rmu_ssc0000050.1_g000090
rosa_roxburghii	Rroxscaffold_2G00150370 Rroxscaffold_7G00162110 Rroxscaffold_7G00162130
rosa_rugosa	Rorug02G0014600 Rorug06G0346400 Rorug06G0346600
rosa_samantha	Rh2AG060400 Rh2BG059100 Rh2CG060900 Rh2DG059700 Rh6AG103200 Rh6AG458200 Rh6AG458400 Rh6BG095600 Rh6BG442400 Rh6BG442500 Rh6BG442600 Rh6BG442700 Rh6CG092500 Rh6CG472700 Rh6CG472800 Rh6CG472900 Rh6DG086500 Rh6DG458800 Rh6DG459000 Rh6DG459100
rosa_wichuraiana	Rw2G004950 Rw6G008910 Rw6G039960 Rw6G039970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	360
Acc65I	GGTACC	1 cut(s)	600
AccB1I	GGYRCC	1 cut(s)	600
AccB7I	CCANNNNNTGG	1 cut(s)	629
AclWI	GGATC	1 cut(s)	380
AcoI	YGGCCR	1 cut(s)	939
AcsI	RAATTY	4 cut(s)	154, 533, 542, 1022
AcuI	CTGAAG	2 cut(s)	660, 689
AfaI	GTAC	3 cut(s)	94, 150, 602
AfiI	CCNNNNNNNGG	4 cut(s)	136, 137, 343, 629
AgsI	TTSAA	6 cut(s)	16, 182, 343, 547, 715, 832
AjnI	CCWGG	1 cut(s)	512
AluBI	AGCT	5 cut(s)	166, 192, 211, 881, 995
AluI	AGCT	5 cut(s)	166, 192, 211, 881, 995
Alw21I	GWGCWC	2 cut(s)	168, 1020
Alw26I	GTCTC	1 cut(s)	498
AlwI	GGATC	1 cut(s)	380
AlwNI	CAGNNNCTG	1 cut(s)	563
AoxI	GGCC	2 cut(s)	127, 939
ApeKI	GCWGC	4 cut(s)	649, 872, 895, 992
ApoI	RAATTY	4 cut(s)	154, 533, 542, 1022
Asp718I	GGTACC	1 cut(s)	600
AspLEI	GCGC	1 cut(s)	361
AspS9I	GGNCC	3 cut(s)	128, 470, 664
AsuC2I	CCSGG	1 cut(s)	943
AsuHPI	GGTGA	4 cut(s)	16, 160, 358, 778
AvaII	GGWCC	2 cut(s)	470, 664
BanI	GGYRCC	1 cut(s)	600
BanII	GRGCYC	2 cut(s)	168, 433
BbsI	GAAGAC	2 cut(s)	908, 1032
Bbv12I	GWGCWC	2 cut(s)	168, 1020
BbvI	GCAGC	4 cut(s)	661, 859, 907, 1004
BccI	CCATC	3 cut(s)	13, 68, 461
BciT130I	CCWGG	1 cut(s)	514
BclI	TGATCA	1 cut(s)	202
BcnI	CCSGG	1 cut(s)	943
BcoDI	GTCTC	1 cut(s)	498
BfaI	CTAG	1 cut(s)	63
BfmI	CTRYAG	1 cut(s)	873
BglII	AGATCT	1 cut(s)	615
BisI	GCNGC	4 cut(s)	650, 873, 896, 993
BlpI	GCTNAGC	1 cut(s)	332
BlsI	GCNGC	4 cut(s)	651, 874, 897, 994
Bme1390I	CCNGG	2 cut(s)	514, 943
Bme18I	GGWCC	2 cut(s)	470, 664
BmgT120I	GGNCC	3 cut(s)	128, 470, 664
BmiI	GGNNCC	4 cut(s)	602, 665, 666, 952
BmrFI	CCNGG	2 cut(s)	514, 943
BmrI	ACTGGG	2 cut(s)	210, 617
BmuI	ACTGGG	2 cut(s)	210, 617
BpiI	GAAGAC	2 cut(s)	908, 1032
Bpu1102I	GCTNAGC	1 cut(s)	332
BpuMI	CCSGG	1 cut(s)	943
BsaJI	CCNNGG	2 cut(s)	513, 942
BsaWI	WCCGGW	1 cut(s)	607
Bsc4I	CCNNNNNNNGG	4 cut(s)	136, 137, 343, 629
Bse1I	ACTGG	2 cut(s)	216, 623
BseBI	CCWGG	1 cut(s)	514
BseDI	CCNNGG	2 cut(s)	513, 942
BseGI	GGATG	4 cut(s)	120, 472, 523, 789
BseLI	CCNNNNNNNGG	4 cut(s)	136, 137, 343, 629
BseMII	CTCAG	2 cut(s)	434, 555
BseNI	ACTGG	2 cut(s)	216, 623
BseXI	GCAGC	4 cut(s)	661, 859, 907, 1004
BsgI	GTGCAG	1 cut(s)	99
BshFI	GGCC	2 cut(s)	129, 941
BshNI	GGYRCC	1 cut(s)	600
BsiHKAI	GWGCWC	2 cut(s)	168, 1020
BsiSI	CCGG	2 cut(s)	608, 942
BslFI	GGGAC	1 cut(s)	650
BslI	CCNNNNNNNGG	4 cut(s)	136, 137, 343, 629
BsmAI	GTCTC	1 cut(s)	498
BsmFI	GGGAC	1 cut(s)	650
BsnI	GGCC	2 cut(s)	129, 941
Bsp1286I	GDGCHC	3 cut(s)	168, 433, 1020
Bsp143I	GATC	3 cut(s)	202, 385, 615
Bsp1720I	GCTNAGC	1 cut(s)	332
BspANI	GGCC	2 cut(s)	129, 941
BspCNI	CTCAG	2 cut(s)	433, 556
BspLI	GGNNCC	4 cut(s)	602, 665, 666, 952
BspMAI	CTGCAG	1 cut(s)	877
BspPI	GGATC	1 cut(s)	380
BspT107I	GGYRCC	1 cut(s)	600
BsrI	ACTGG	2 cut(s)	216, 623
BssECI	CCNNGG	2 cut(s)	513, 942
BssMI	GATC	3 cut(s)	202, 385, 615
Bst2UI	CCWGG	1 cut(s)	514
Bst4CI	ACNGT	1 cut(s)	70
Bst6I	CTCTTC	2 cut(s)	180, 606
BstAPI	GCANNNNNTGC	1 cut(s)	380
BstC8I	GCNNGC	3 cut(s)	190, 299, 654
BstDEI	CTNAG	3 cut(s)	332, 420, 564
BstENI	CCTNNNNNAGG	1 cut(s)	341
BstF5I	GGATG	4 cut(s)	120, 472, 523, 789
BstHHI	GCGC	1 cut(s)	361
BstKTI	GATC	3 cut(s)	205, 388, 618
BstMAI	GTCTC	1 cut(s)	498
BstMBI	GATC	3 cut(s)	202, 385, 615
BstMWI	GCNNNNNNNGC	3 cut(s)	380, 878, 1001
BstNI	CCWGG	1 cut(s)	514
BstNSI	RCATGY	1 cut(s)	301
BstSCI	CCNGG	2 cut(s)	512, 941
BstSFI	CTRYAG	1 cut(s)	873
BstV1I	GCAGC	4 cut(s)	661, 859, 907, 1004
BstV2I	GAAGAC	2 cut(s)	908, 1032
BstX2I	RGATCY	2 cut(s)	385, 615
BstYI	RGATCY	2 cut(s)	385, 615
BsuRI	GGCC	2 cut(s)	129, 941
BtsCI	GGATG	4 cut(s)	120, 472, 523, 789
BtsI	GCAGTG	1 cut(s)	849
BtsIMutI	CAGTG	1 cut(s)	849
Cac8I	GCNNGC	3 cut(s)	190, 299, 654
CaiI	CAGNNNCTG	1 cut(s)	563
CfoI	GCGC	1 cut(s)	361
Cfr13I	GGNCC	3 cut(s)	128, 470, 664
Csp6I	GTAC	3 cut(s)	93, 149, 601
CspCI	CAANNNNNGTGG	4 cut(s)	177, 212, 838, 873
CviAII	CATG	3 cut(s)	97, 298, 862
CviQI	GTAC	3 cut(s)	93, 149, 601
DdeI	CTNAG	3 cut(s)	332, 420, 564
DpnI	GATC	3 cut(s)	204, 387, 617
DpnII	GATC	3 cut(s)	202, 385, 615
EaeI	YGGCCR	1 cut(s)	939
Eam1104I	CTCTTC	2 cut(s)	180, 606
EarI	CTCTTC	2 cut(s)	180, 606
Ecl136II	GAGCTC	1 cut(s)	166
Eco24I	GRGCYC	2 cut(s)	168, 433
Eco32I	GATATC	1 cut(s)	486
Eco47I	GGWCC	2 cut(s)	470, 664
Eco53kI	GAGCTC	1 cut(s)	166
Eco57I	CTGAAG	2 cut(s)	660, 689
EcoICRI	GAGCTC	1 cut(s)	166
EcoNI	CCTNNNNNAGG	1 cut(s)	341
EcoO109I	RGGNCCY	1 cut(s)	664
EcoRI	GAATTC	1 cut(s)	542
EcoRII	CCWGG	1 cut(s)	512
EcoRV	GATATC	1 cut(s)	486
EcoT38I	GRGCYC	2 cut(s)	168, 433
FaeI	CATG	3 cut(s)	100, 301, 865
FalI	AAGNNNNNCTT	2 cut(s)	893, 925
FaqI	GGGAC	1 cut(s)	650
FatI	CATG	3 cut(s)	96, 297, 861
FbaI	TGATCA	1 cut(s)	202
Fnu4HI	GCNGC	4 cut(s)	650, 873, 896, 993
FokI	GGATG	4 cut(s)	127, 479, 530, 796
FriOI	GRGCYC	2 cut(s)	168, 433
Fsp4HI	GCNGC	4 cut(s)	650, 873, 896, 993
FspBI	CTAG	1 cut(s)	63
FspI	TGCGCA	1 cut(s)	360
GlaI	GCGC	1 cut(s)	360
GluI	GCNGC	4 cut(s)	650, 873, 896, 993
HaeIII	GGCC	2 cut(s)	129, 941
HapII	CCGG	2 cut(s)	608, 942
HhaI	GCGC	1 cut(s)	361
Hin1II	CATG	3 cut(s)	100, 301, 865
Hin6I	GCGC	1 cut(s)	359
HinP1I	GCGC	1 cut(s)	359
HincII	GTYRAC	1 cut(s)	805
HindII	GTYRAC	1 cut(s)	805
HindIII	AAGCTT	2 cut(s)	190, 209
HinfI	GANTC	1 cut(s)	494
HpaII	CCGG	2 cut(s)	608, 942
HphI	GGTGA	4 cut(s)	16, 160, 358, 778
Hpy166II	GTNNAC	3 cut(s)	673, 746, 805
Hpy188I	TCNGA	5 cut(s)	207, 503, 541, 588, 934
Hpy188III	TCNNGA	5 cut(s)	231, 473, 638, 707, 829
Hpy8I	GTNNAC	3 cut(s)	673, 746, 805
HpyAV	CCTTC	2 cut(s)	231, 919
HpyCH4III	ACNGT	1 cut(s)	70
HpyF10VI	GCNNNNNNNGC	3 cut(s)	380, 878, 1001
HpyF3I	CTNAG	3 cut(s)	332, 420, 564
Hsp92II	CATG	3 cut(s)	100, 301, 865
HspAI	GCGC	1 cut(s)	359
KflI	GGGWCCC	1 cut(s)	664
KpnI	GGTACC	1 cut(s)	604
Ksp22I	TGATCA	1 cut(s)	202
Kzo9I	GATC	3 cut(s)	202, 385, 615
Lsp1109I	GCAGC	4 cut(s)	661, 859, 907, 1004
MaeI	CTAG	1 cut(s)	63
MaeIII	GTNAC	3 cut(s)	313, 409, 524
MalI	GATC	3 cut(s)	204, 387, 617
MboI	GATC	3 cut(s)	202, 385, 615
MboII	GAAGA	8 cut(s)	28, 167, 170, 246, 610, 623, 913, 1032
MfeI	CAATTG	1 cut(s)	855
MflI	RGATCY	2 cut(s)	385, 615
MhlI	GDGCHC	3 cut(s)	168, 433, 1020
MlyI	GAGTC	1 cut(s)	503
MnlI	CCTC	8 cut(s)	183, 399, 429, 450, 715, 941, 964, 982
MseI	TTAA	3 cut(s)	293, 303, 843
MslI	CAYNNNNRTG	1 cut(s)	1013
MspI	CCGG	2 cut(s)	608, 942
MspR9I	CCNGG	2 cut(s)	514, 943
MunI	CAATTG	1 cut(s)	855
MvaI	CCWGG	1 cut(s)	514
MwoI	GCNNNNNNNGC	3 cut(s)	380, 878, 1001
NciI	CCSGG	1 cut(s)	943
NdeII	GATC	3 cut(s)	202, 385, 615
NlaIII	CATG	3 cut(s)	100, 301, 865
NlaIV	GGNNCC	4 cut(s)	602, 665, 666, 952
NmuCI	GTSAC	1 cut(s)	409
NsbI	TGCGCA	1 cut(s)	360
NspI	RCATGY	1 cut(s)	301
PaeI	GCATGC	1 cut(s)	301
PflMI	CCANNNNNTGG	1 cut(s)	629
PkrI	GCNGC	4 cut(s)	651, 874, 897, 994
PleI	GAGTC	1 cut(s)	502
PpsI	GAGTC	1 cut(s)	502
PpuMI	RGGWCCY	1 cut(s)	664
Psp124BI	GAGCTC	1 cut(s)	168
Psp5II	RGGWCCY	1 cut(s)	664
Psp6I	CCWGG	1 cut(s)	512
PspGI	CCWGG	1 cut(s)	512
PspN4I	GGNNCC	4 cut(s)	602, 665, 666, 952
PspPI	GGNCC	3 cut(s)	128, 470, 664
PspPPI	RGGWCCY	1 cut(s)	664
PstI	CTGCAG	1 cut(s)	877
PstNI	CAGNNNCTG	1 cut(s)	563
PsuI	RGATCY	2 cut(s)	385, 615
RsaI	GTAC	3 cut(s)	94, 150, 602
RsaNI	GTAC	3 cut(s)	93, 149, 601
RseI	CAYNNNNRTG	1 cut(s)	1013
SacI	GAGCTC	1 cut(s)	168
SaqAI	TTAA	3 cut(s)	293, 303, 843
SatI	GCNGC	4 cut(s)	650, 873, 896, 993
Sau3AI	GATC	3 cut(s)	202, 385, 615
Sau96I	GGNCC	3 cut(s)	128, 470, 664
SchI	GAGTC	1 cut(s)	503
ScrFI	CCNGG	2 cut(s)	514, 943
SduI	GDGCHC	3 cut(s)	168, 433, 1020
SfcI	CTRYAG	1 cut(s)	873
SinI	GGWCC	2 cut(s)	470, 664
SmiMI	CAYNNNNRTG	1 cut(s)	1013
SphI	GCATGC	1 cut(s)	301
SspI	AATATT	1 cut(s)	683
SspMI	CTAG	1 cut(s)	63
SstI	GAGCTC	1 cut(s)	168
StyD4I	CCNGG	2 cut(s)	512, 941
TaaI	ACNGT	1 cut(s)	70
TaqI	TCGA	2 cut(s)	244, 962
Tru1I	TTAA	3 cut(s)	293, 303, 843
Tru9I	TTAA	3 cut(s)	293, 303, 843
TscAI	CASTG	1 cut(s)	856
TseFI	GTSAC	1 cut(s)	409
TseI	GCWGC	4 cut(s)	649, 872, 895, 992
Tsp45I	GTSAC	1 cut(s)	409
TspDTI	ATGAA	5 cut(s)	113, 131, 901, 981, 1015
TspRI	CASTG	1 cut(s)	856
Van91I	CCANNNNNTGG	1 cut(s)	629
VpaK11BI	GGWCC	2 cut(s)	470, 664
XagI	CCTNNNNNAGG	1 cut(s)	341
XapI	RAATTY	4 cut(s)	154, 533, 542, 1022
XceI	RCATGY	1 cut(s)	301
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.