Rh6CG472700
ERF Family

Phosphorylase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000829
Physical Location & Seq
Forward (+)
64246441 .. 64251385
4945 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG472700.1

Sequence Viewer

Length: 1041 bp
ATGGGGGTAGCTTGGCCCTGCGTAGTTGTTTATGCTGTGAGCATCAGCTTGATGATGCTCAACGGAGCTGCACTACCTGAAGAAACATTGGAATTGATAGCCGAGGCCAACAAGAATGGCCCTTATTTAGGCTTGGTCATTCCAAATTCTTTCGAAATGGATCCTCTCCTTCAATCTCCGAACTTCACTTCCTCTAATTTGACTATAGATTTTTCTGGAAGGAGATTTCGGTTTGGAACGATTGCTGAAAAAAAAGTCATATTAGTCATGACCGGACTTGCCATGATTAATGCAGGAATAACCACTCAGCTCTTGCTAAGCCTATTCGATATAGAAGGGGTGGTGCATTATGGCATAGCTGGCAATGCAAACCCAGATCTCCATCTTGCAGATGTGGTCATTCCTCAGTATTGGGCGCATACTGCTCTTTGGAACTGGCAGAGATATGGAAATGGACCAGAAGATGAGCTACCCCTTGAATCACAAGGAGACTACACACTACAAAAAATATTCAATATGACAGATAGAAGCTCATACGACAACCTGTTGAACAATATCTGGTATCAACCGGAGGAAGTCTTCCCCGTCGATGGAACTCCAGAACAAAGAGAGCACGCCTTTTGGATCCCTGTTGATCCATTCTACTATGAAGTTTCCCAAAAGCTAGAGGATGTGATACTGGAAGGTTGCCTAAACTCAACGACGTGTTTGTCACATACACCAAGAGTGGCAAGAGTCCAAAGGGGAACAAGTGCAAGCATTTACCTTGACAATGCTGCATATCGCGACTTCATATATGATAAGTTCAACATAACTCCGGTGGATATGGAAAGTGCTTCTGTTGCTTTGATATGTCTTCAACAAAAGGTGCCTTTCATTGTCATCAGAGCGCTCTCTGACTTGGCCGGTGGTGGCTCTGCAGATTCGAATGAGGCTGACACTTTCGTCACTCTTGCTTCCAACAATTCAGTCACAGTTCTTTTGGAATTTGTGAAACACTTATCTGCTGCTACTATCTCATTGAGCAACATCAATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNP_UDP_1

Protein Analysis

346

Amino Acids

38.27

Weight (kDa)

4.51

Isoelectric Point (pI)

34.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNP_UDP_1 PF01048 44 - 332 8.1e-30 Phosphorylase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 709, 944
AccB1I GGYRCC 1 cut(s) 868
AccII CGCG 1 cut(s) 786
AclWI GGATC 5 cut(s) 155, 168, 619, 629, 632
AcoI YGGCCR 1 cut(s) 903
AcsI RAATTY 2 cut(s) 145, 986
AcuI CTGAAG 1 cut(s) 99
AfeI AGCGCT 1 cut(s) 891
AfiI CCNNNNNNNGG 2 cut(s) 128, 590
AflIII ACRYGT 1 cut(s) 704
AgsI TTSAA 6 cut(s) 173, 479, 514, 550, 808, 860
AjiI CACGTC 1 cut(s) 705
AloI GAACNNNNNNTCC 2 cut(s) 173, 205
AluBI AGCT 8 cut(s) 11, 48, 68, 310, 359, 469, 531, 664
AluI AGCT 8 cut(s) 11, 48, 68, 310, 359, 469, 531, 664
Alw21I GWGCWC 1 cut(s) 615
Alw26I GTCTC 1 cut(s) 483
AlwI GGATC 5 cut(s) 155, 168, 619, 629, 632
Aor51HI AGCGCT 1 cut(s) 891
AoxI GGCC 4 cut(s) 14, 105, 118, 903
ApeKI GCWGC 3 cut(s) 68, 776, 1007
ApoI RAATTY 2 cut(s) 145, 986
AseI ATTAAT 1 cut(s) 288
AspLEI GCGC 2 cut(s) 418, 892
AspS9I GGNCC 3 cut(s) 15, 119, 455
AsuII TTCGAA 2 cut(s) 153, 926
AvaII GGWCC 1 cut(s) 455
BamHI GGATCC 2 cut(s) 160, 624
BanI GGYRCC 1 cut(s) 868
BarI GAAGNNNNNNTAC 2 cut(s) 453, 485
BbsI GAAGAC 2 cut(s) 571, 848
Bbv12I GWGCWC 1 cut(s) 615
BbvI GCAGC 3 cut(s) 55, 763, 994
BccI CCATC 2 cut(s) 390, 584
BcoDI GTCTC 1 cut(s) 483
BfaI CTAG 1 cut(s) 665
BfmI CTRYAG 2 cut(s) 204, 918
BfoI RGCGCY 1 cut(s) 893
BglII AGATCT 1 cut(s) 376
BisI GCNGC 3 cut(s) 69, 777, 1008
BlpI GCTNAGC 1 cut(s) 317
BlsI GCNGC 3 cut(s) 70, 778, 1009
Bme18I GGWCC 1 cut(s) 455
BmgBI CACGTC 1 cut(s) 705
BmgT120I GGNCC 3 cut(s) 15, 119, 455
BmiI GGNNCC 3 cut(s) 162, 626, 870
BmsI GCATC 2 cut(s) 45, 51
BpiI GAAGAC 2 cut(s) 571, 848
BpmI CTGGAG 1 cut(s) 582
Bpu1102I GCTNAGC 1 cut(s) 317
Bpu14I TTCGAA 2 cut(s) 153, 926
BsaBI GATNNNNATC 1 cut(s) 381
BsaJI CCNNGG 1 cut(s) 102
BsaWI WCCGGW 3 cut(s) 272, 568, 817
Bsc4I CCNNNNNNNGG 2 cut(s) 128, 590
Bse118I RCCGGY 1 cut(s) 905
Bse1I ACTGG 2 cut(s) 440, 684
Bse3DI GCAATG 1 cut(s) 370
Bse8I GATNNNNATC 1 cut(s) 381
BseDI CCNNGG 1 cut(s) 102
BseGI GGATG 1 cut(s) 676
BseJI GATNNNNATC 1 cut(s) 381
BseLI CCNNNNNNNGG 2 cut(s) 128, 590
BseMI GCAATG 1 cut(s) 370
BseMII CTCAG 2 cut(s) 320, 419
BseNI ACTGG 2 cut(s) 440, 684
BseXI GCAGC 3 cut(s) 55, 763, 994
BsgI GTGCAG 1 cut(s) 54
Bsh1236I CGCG 1 cut(s) 786
BshFI GGCC 4 cut(s) 16, 107, 120, 905
BshNI GGYRCC 1 cut(s) 868
BsiHKAI GWGCWC 1 cut(s) 615
BsiSI CCGG 4 cut(s) 273, 569, 818, 906
BslI CCNNNNNNNGG 2 cut(s) 128, 590
BsmAI GTCTC 1 cut(s) 483
BsnI GGCC 4 cut(s) 16, 107, 120, 905
Bsp119I TTCGAA 2 cut(s) 153, 926
Bsp1286I GDGCHC 1 cut(s) 615
Bsp143I GATC 4 cut(s) 160, 376, 624, 634
Bsp1720I GCTNAGC 1 cut(s) 317
Bsp68I TCGCGA 1 cut(s) 786
BspANI GGCC 4 cut(s) 16, 107, 120, 905
BspCNI CTCAG 2 cut(s) 319, 418
BspFNI CGCG 1 cut(s) 786
BspHI TCATGA 1 cut(s) 267
BspLI GGNNCC 3 cut(s) 162, 626, 870
BspMAI CTGCAG 1 cut(s) 922
BspPI GGATC 5 cut(s) 155, 168, 619, 629, 632
BspT104I TTCGAA 2 cut(s) 153, 926
BspT107I GGYRCC 1 cut(s) 868
BsrDI GCAATG 1 cut(s) 370
BsrFI RCCGGY 1 cut(s) 905
BsrI ACTGG 2 cut(s) 440, 684
BssAI RCCGGY 1 cut(s) 905
BssECI CCNNGG 1 cut(s) 102
BssMI GATC 4 cut(s) 160, 376, 624, 634
Bst4CI ACNGT 1 cut(s) 976
BstBI TTCGAA 2 cut(s) 153, 926
BstC8I GCNNGC 3 cut(s) 361, 615, 757
BstDEI CTNAG 3 cut(s) 306, 317, 405
BstENI CCTNNNNNAGG 1 cut(s) 126
BstF5I GGATG 1 cut(s) 676
BstFNI CGCG 1 cut(s) 786
BstH2I RGCGCY 1 cut(s) 893
BstHHI GCGC 2 cut(s) 418, 892
BstKTI GATC 4 cut(s) 163, 379, 627, 637
BstMAI GTCTC 1 cut(s) 483
BstMBI GATC 4 cut(s) 160, 376, 624, 634
BstMWI GCNNNNNNNGC 4 cut(s) 360, 365, 422, 842
BstSFI CTRYAG 2 cut(s) 204, 918
BstUI CGCG 1 cut(s) 786
BstV1I GCAGC 3 cut(s) 55, 763, 994
BstV2I GAAGAC 2 cut(s) 571, 848
BstX2I RGATCY 3 cut(s) 160, 376, 624
BstYI RGATCY 3 cut(s) 160, 376, 624
BsuRI GGCC 4 cut(s) 16, 107, 120, 905
BtrI CACGTC 1 cut(s) 705
BtsCI GGATG 1 cut(s) 676
BtuMI TCGCGA 1 cut(s) 786
Cac8I GCNNGC 3 cut(s) 361, 615, 757
CciI TCATGA 1 cut(s) 267
CfoI GCGC 2 cut(s) 418, 892
Cfr10I RCCGGY 1 cut(s) 905
Cfr13I GGNCC 3 cut(s) 15, 119, 455
CviAII CATG 2 cut(s) 268, 283
DdeI CTNAG 3 cut(s) 306, 317, 405
DpnI GATC 4 cut(s) 162, 378, 626, 636
DpnII GATC 4 cut(s) 160, 376, 624, 634
DrdI GACNNNNNNGTC 2 cut(s) 709, 944
DseDI GACNNNNNNGTC 2 cut(s) 709, 944
EaeI YGGCCR 1 cut(s) 903
Eco47I GGWCC 1 cut(s) 455
Eco47III AGCGCT 1 cut(s) 891
Eco57I CTGAAG 1 cut(s) 99
EcoNI CCTNNNNNAGG 1 cut(s) 126
FaeI CATG 2 cut(s) 271, 286
FatI CATG 2 cut(s) 267, 282
Fnu4HI GCNGC 3 cut(s) 69, 777, 1008
FokI GGATG 1 cut(s) 683
Fsp4HI GCNGC 3 cut(s) 69, 777, 1008
FspBI CTAG 1 cut(s) 665
GlaI GCGC 2 cut(s) 417, 891
GluI GCNGC 3 cut(s) 69, 777, 1008
GsuI CTGGAG 1 cut(s) 582
HaeII RGCGCY 1 cut(s) 893
HaeIII GGCC 4 cut(s) 16, 107, 120, 905
HapII CCGG 4 cut(s) 273, 569, 818, 906
HhaI GCGC 2 cut(s) 418, 892
Hin1II CATG 2 cut(s) 271, 286
Hin6I GCGC 2 cut(s) 416, 890
HinP1I GCGC 2 cut(s) 416, 890
HinfI GANTC 3 cut(s) 479, 735, 923
HpaII CCGG 4 cut(s) 273, 569, 818, 906
Hpy188I TCNGA 3 cut(s) 180, 887, 898
Hpy188III TCNNGA 4 cut(s) 216, 268, 599, 785
Hpy99I CGWCG 2 cut(s) 590, 706
HpyAV CCTTC 4 cut(s) 179, 213, 329, 677
HpyCH4III ACNGT 1 cut(s) 976
HpyCH4IV ACGT 1 cut(s) 704
HpyCH4V TGCA 8 cut(s) 71, 293, 346, 368, 389, 755, 779, 920
HpyF10VI GCNNNNNNNGC 4 cut(s) 360, 365, 422, 842
HpyF3I CTNAG 3 cut(s) 306, 317, 405
HpySE526I ACGT 1 cut(s) 704
Hsp92II CATG 2 cut(s) 271, 286
HspAI GCGC 2 cut(s) 416, 890
Kzo9I GATC 4 cut(s) 160, 376, 624, 634
LmnI GCTCC 1 cut(s) 65
Lsp1109I GCAGC 3 cut(s) 55, 763, 994
LweI GCATC 2 cut(s) 45, 51
MaeI CTAG 1 cut(s) 665
MaeII ACGT 1 cut(s) 704
MaeIII GTNAC 3 cut(s) 711, 946, 970
MalI GATC 4 cut(s) 162, 378, 626, 636
MboI GATC 4 cut(s) 160, 376, 624, 634
MboII GAAGA 4 cut(s) 92, 473, 571, 848
MflI RGATCY 3 cut(s) 160, 376, 624
MhlI GDGCHC 1 cut(s) 615
MluCI AATT 5 cut(s) 92, 145, 196, 964, 986
MlyI GAGTC 1 cut(s) 744
MmeI TCCRAC 1 cut(s) 984
MnlI CCTC 7 cut(s) 97, 174, 202, 414, 565, 661, 925
MseI TTAA 2 cut(s) 288, 1039
MspI CCGG 4 cut(s) 273, 569, 818, 906
MvnI CGCG 1 cut(s) 786
MwoI GCNNNNNNNGC 4 cut(s) 360, 365, 422, 842
NdeII GATC 4 cut(s) 160, 376, 624, 634
NlaIII CATG 2 cut(s) 271, 286
NlaIV GGNNCC 3 cut(s) 162, 626, 870
NmeAIII GCCGAG 1 cut(s) 127
NmuCI GTSAC 3 cut(s) 711, 946, 970
NruI TCGCGA 1 cut(s) 786
NspV TTCGAA 2 cut(s) 153, 926
PagI TCATGA 1 cut(s) 267
PfeI GAWTC 2 cut(s) 479, 923
PkrI GCNGC 3 cut(s) 70, 778, 1009
PleI GAGTC 1 cut(s) 743
PpsI GAGTC 1 cut(s) 743
PshBI ATTAAT 1 cut(s) 288
PspN4I GGNNCC 3 cut(s) 162, 626, 870
PspPI GGNCC 3 cut(s) 15, 119, 455
PstI CTGCAG 1 cut(s) 922
PsuI RGATCY 3 cut(s) 160, 376, 624
RruI TCGCGA 1 cut(s) 786
SaqAI TTAA 2 cut(s) 288, 1039
SatI GCNGC 3 cut(s) 69, 777, 1008
Sau3AI GATC 4 cut(s) 160, 376, 624, 634
Sau96I GGNCC 3 cut(s) 15, 119, 455
SchI GAGTC 1 cut(s) 744
SduI GDGCHC 1 cut(s) 615
SfaNI GCATC 2 cut(s) 45, 51
SfcI CTRYAG 2 cut(s) 204, 918
SfuI TTCGAA 2 cut(s) 153, 926
SinI GGWCC 1 cut(s) 455
Sse9I AATT 5 cut(s) 92, 145, 196, 964, 986
SspI AATATT 1 cut(s) 510
SspMI CTAG 1 cut(s) 665
TaaI ACNGT 1 cut(s) 976
TaiI ACGT 1 cut(s) 707
TaqI TCGA 4 cut(s) 153, 327, 588, 926
TasI AATT 5 cut(s) 92, 145, 196, 964, 986
TfiI GAWTC 2 cut(s) 479, 923
Tru1I TTAA 2 cut(s) 288, 1039
Tru9I TTAA 2 cut(s) 288, 1039
TseFI GTSAC 3 cut(s) 711, 946, 970
TseI GCWGC 3 cut(s) 68, 776, 1007
Tsp45I GTSAC 3 cut(s) 711, 946, 970
TspDTI ATGAA 3 cut(s) 663, 781, 865
TspGWI ACGGA 1 cut(s) 78
VpaK11BI GGWCC 1 cut(s) 455
VspI ATTAAT 1 cut(s) 288
XagI CCTNNNNNAGG 1 cut(s) 126
XapI RAATTY 2 cut(s) 145, 986
XspI CTAG 1 cut(s) 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.