Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000829

Physical Location & Seq

Genomic Coordinates Reverse (-)

37944901 .. 37947126

Gene Structure 2226 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G450100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGGGATATTGTGATCGAGCAGAGCAGGTTGGTTGCCTTGCCTCAGCTGGTGTTGTTTCTGCAATCTGGGTTTTTTGGCTCACAGATTGTTTGCTTTACTTCTGGCTTGTTTGTAGCTTTTGCTTCTTTATAAGAAAGAAAATGGGAATTTCAGCTGTGGCTTGCATAGTTCTCTATGCTATATTGATGCTTAAAGCACAGCAGTCAAATGGTGCATTGTCAGCAGAGACACAGATGTTGATTGAGGAGGCCAACATGAGTGGCCCTTATTTAGGCCTGGTCATTCCAAATTCCTTTGAAATGGACCCTCTTCTGCAATCTCCAAACTTCACTTCAAGCAACTTGTTTATAGATTTTTCTGGGAGGAGATTTAGGTTTGGAACAATTGCTAATAAGCAAGTTATATTAGTGATGACAGGACTGTCAATGATTAATGCAGCAATAACTACTCAGCTATTATTAAGTGTGTTCAATATAGAAGGAGTGGTGCATTATGGCATAGCTGGGCATGCAAACCCGTCTTTCAATCTTGCAGATGTGGTCATTCCTCAGTATTGGTCTCATTCTGCTTTATGGAGCTGGCAGAGATATGGAAAAGGGCCTCAAGATGAGCTGCCCCTTGAAGCAAATGGAGACTACACCAGAGAATTTGGGTACTTGAATGTTGCAAATTACACTGTGAATGTGACAGATGGCAGCTCATATGACAACTTATTGAACAACATTTGGTTTCAACCAGAGGAAGTCTTCCCCATAGATGGAACTCCAGAGGAAAGACAGCATGCCTTTTGGGTTGCTGTTGATCCCCTCTACTATGAAATCTCCCAAAAATTGGAGGAATTGGAACTTGAACGTTGCCTAAACGCCACAACATGTTTGCCCCATACACCAAAAGTGGCTAGAGTCCAAAGGGGTACAAGTGCAAGCATTTTCCTGTCCAATGCTGCTTATCGTAGCTTCTTATATGATAAGTTCAACATAACCCCTCTGGACATGGAAAGTGCTTCTGTTGCCCTAATATGTCTTCAGCAAAGGGTGCCTTTCATTGCCATCAGGTCTCTCTCGTCTTCTTTGACTGGCGGCGGCTCAGGTGATCCAAACGAGGCTAGCAAATTCATAACTCTCGCATCGAAAAATTCAGTTACAGCAGTGGTGGAATTTATCAAACAGTTGTCTCTTCATCAGCTCTTAGTTAATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNP_UDP_1

Protein Analysis

401

Amino Acids

44.45

Weight (kDa)

5.06

Isoelectric Point (pI)

41.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28940 AT4G28940
fragaria_vesca	FvH4_1g05530 FvH4_2g35741 FvH4_2g35750 FvH4_2g35760 FvH4_2g35761 FvH4_2g35762
malus_domestica	MD15G1095100.v1.1 MD15G1095200.v1.1 MD15G1095300.v1.1 MD15G1191300.v1.1
prunus_persica	Prupe.1G450100_v2.0.a1 Prupe.1G450200_v2.0.a1 Prupe.7G225900_v2.0.a1 Prupe.7G225900_v2.0.a1 Prupe.7G225900_v2.0.a1
pyrus_communis	pycom15g08760 pycom15g08770 pycom15g17130
rosa_chinensis	RchiOBHm_Chr1g0336711 RchiOBHm_Chr2g0091231 RchiOBHm_Chr6g0259261 RchiOBHm_Chr6g0259271 RchiOBHm_Chr6g0306011 RchiOBHm_Chr6g0306021
rosa_laevigata	RLG00000010830 RLG00000010831 RLG00000010832 RLG00000014544 RLG00000016193 RLG00000029340
rosa_multiflora	Rmu_sc0002270.1_g000016 Rmu_sc0011974.1_g000004 Rmu_sc0020534.1_g000001 Rmu_sc0035114.1_g000001 Rmu_sc0036553.1_g000001 Rmu_ssc0000050.1_g000090
rosa_roxburghii	Rroxscaffold_2G00150370 Rroxscaffold_7G00162110 Rroxscaffold_7G00162130
rosa_rugosa	Rorug02G0014600 Rorug06G0346400 Rorug06G0346600
rosa_samantha	Rh2AG060400 Rh2BG059100 Rh2CG060900 Rh2DG059700 Rh6AG103200 Rh6AG458200 Rh6AG458400 Rh6BG095600 Rh6BG442400 Rh6BG442500 Rh6BG442600 Rh6BG442700 Rh6CG092500 Rh6CG472700 Rh6CG472800 Rh6CG472900 Rh6DG086500 Rh6DG458800 Rh6DG459000 Rh6DG459100
rosa_wichuraiana	Rw2G004950 Rw6G008910 Rw6G039960 Rw6G039970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	131
AasI	GACNNNNNNGTC	1 cut(s)	421
Acc36I	ACCTGC	1 cut(s)	16
AccB1I	GGYRCC	1 cut(s)	1036
AccB7I	CCANNNNNTGG	1 cut(s)	832
AciI	CCGC	2 cut(s)	1080, 1083
AclI	AACGTT	1 cut(s)	853
AclWI	GGATC	2 cut(s)	797, 1088
AcsI	RAATTY	6 cut(s)	147, 289, 647, 1112, 1135, 1157
AcuI	CTGAAG	1 cut(s)	1010
AfaI	GTAC	2 cut(s)	656, 916
AfiI	CCNNNNNNNGG	3 cut(s)	272, 758, 832
AflIII	ACRYGT	1 cut(s)	872
AjnI	CCWGG	1 cut(s)	276
AjuI	GAANNNNNNNTTGG	2 cut(s)	316, 348
Alw26I	GTCTC	5 cut(s)	221, 564, 627, 1062, 1179
AlwI	GGATC	2 cut(s)	797, 1088
AoxI	GGCC	4 cut(s)	249, 262, 274, 599
ApeKI	GCWGC	4 cut(s)	437, 613, 696, 944
ApoI	RAATTY	6 cut(s)	147, 289, 647, 1112, 1135, 1157
AseI	ATTAAT	1 cut(s)	432
AspS9I	GGNCC	3 cut(s)	263, 304, 599
AsuHPI	GGTGA	1 cut(s)	1103
AsuNHI	GCTAGC	1 cut(s)	1106
AvaII	GGWCC	1 cut(s)	304
BanI	GGYRCC	1 cut(s)	1036
BbsI	GAAGAC	3 cut(s)	739, 1016, 1059
BbvCI	CCTCAGC	1 cut(s)	43
BbvI	GCAGC	4 cut(s)	449, 600, 708, 931
BccI	CCATC	3 cut(s)	686, 752, 1058
BciT130I	CCWGG	1 cut(s)	278
BcoDI	GTCTC	5 cut(s)	221, 564, 627, 1062, 1179
BfaI	CTAG	2 cut(s)	900, 1107
BfuAI	ACCTGC	1 cut(s)	16
BisI	GCNGC	6 cut(s)	438, 614, 697, 945, 1081, 1084
BlsI	GCNGC	6 cut(s)	439, 615, 698, 946, 1082, 1085
Bme1390I	CCNGG	1 cut(s)	278
Bme18I	GGWCC	1 cut(s)	304
BmgT120I	GGNCC	3 cut(s)	263, 304, 599
BmiI	GGNNCC	2 cut(s)	306, 1038
BmrFI	CCNGG	1 cut(s)	278
BmsI	GCATC	2 cut(s)	177, 1136
BmtI	GCTAGC	1 cut(s)	1110
BpiI	GAAGAC	3 cut(s)	739, 1016, 1059
BpmI	CTGGAG	1 cut(s)	750
Bpu10I	CCTNAGC	2 cut(s)	43, 1087
BpuEI	CTTGAG	1 cut(s)	588
BsaI	GGTCTC	2 cut(s)	564, 1062
Bsc4I	CCNNNNNNNGG	3 cut(s)	272, 758, 832
Bse1I	ACTGG	1 cut(s)	1081
Bse3DI	GCAATG	1 cut(s)	1044
BseBI	CCWGG	1 cut(s)	278
BseLI	CCNNNNNNNGG	3 cut(s)	272, 758, 832
BseMI	GCAATG	1 cut(s)	1044
BseMII	CTCAG	4 cut(s)	57, 464, 563, 1101
BseNI	ACTGG	1 cut(s)	1081
BseRI	GAGGAG	2 cut(s)	260, 379
BseXI	GCAGC	4 cut(s)	449, 600, 708, 931
BseYI	CCCAGC	1 cut(s)	503
BshFI	GGCC	4 cut(s)	251, 264, 276, 601
BshNI	GGYRCC	1 cut(s)	1036
BslI	CCNNNNNNNGG	3 cut(s)	272, 758, 832
BsmAI	GTCTC	5 cut(s)	221, 564, 627, 1062, 1179
BsnI	GGCC	4 cut(s)	251, 264, 276, 601
Bso31I	GGTCTC	2 cut(s)	564, 1062
Bsp143I	GATC	3 cut(s)	13, 802, 1093
BspACI	CCGC	2 cut(s)	1080, 1083
BspANI	GGCC	4 cut(s)	251, 264, 276, 601
BspCNI	CTCAG	4 cut(s)	56, 463, 562, 1100
BspLI	GGNNCC	2 cut(s)	306, 1038
BspMI	ACCTGC	1 cut(s)	16
BspOI	GCTAGC	1 cut(s)	1110
BspPI	GGATC	2 cut(s)	797, 1088
BspT107I	GGYRCC	1 cut(s)	1036
BspTNI	GGTCTC	2 cut(s)	564, 1062
BsrDI	GCAATG	1 cut(s)	1044
BsrI	ACTGG	1 cut(s)	1081
BssMI	GATC	3 cut(s)	13, 802, 1093
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	3 cut(s)	423, 679, 1170
Bst6I	CTCTTC	2 cut(s)	315, 1182
BstAPI	GCANNNNNTGC	1 cut(s)	1036
BstC8I	GCNNGC	6 cut(s)	163, 510, 581, 783, 925, 1108
BstDEI	CTNAG	5 cut(s)	43, 450, 549, 1087, 1189
BstENI	CCTNNNNNAGG	1 cut(s)	270
BstKTI	GATC	3 cut(s)	16, 805, 1096
BstMAI	GTCTC	5 cut(s)	221, 564, 627, 1062, 1179
BstMBI	GATC	3 cut(s)	13, 802, 1093
BstMWI	GCNNNNNNNGC	4 cut(s)	221, 509, 1010, 1036
BstNI	CCWGG	1 cut(s)	278
BstNSI	RCATGY	3 cut(s)	512, 785, 876
BstSCI	CCNGG	1 cut(s)	276
BstV1I	GCAGC	4 cut(s)	449, 600, 708, 931
BstV2I	GAAGAC	3 cut(s)	739, 1016, 1059
BsuRI	GGCC	4 cut(s)	251, 264, 276, 601
BtsI	GCAGTG	1 cut(s)	1155
BtsIMutI	CAGTG	2 cut(s)	675, 1155
BveI	ACCTGC	1 cut(s)	16
Cac8I	GCNNGC	6 cut(s)	163, 510, 581, 783, 925, 1108
Cfr13I	GGNCC	3 cut(s)	263, 304, 599
Csp6I	GTAC	2 cut(s)	655, 915
CspCI	CAANNNNNGTGG	2 cut(s)	241, 276
CviAII	CATG	5 cut(s)	256, 509, 782, 873, 994
CviQI	GTAC	2 cut(s)	655, 915
DdeI	CTNAG	5 cut(s)	43, 450, 549, 1087, 1189
DpnI	GATC	3 cut(s)	15, 804, 1095
DpnII	GATC	3 cut(s)	13, 802, 1093
DrdI	GACNNNNNNGTC	1 cut(s)	421
DseDI	GACNNNNNNGTC	1 cut(s)	421
Eam1104I	CTCTTC	2 cut(s)	315, 1182
EarI	CTCTTC	2 cut(s)	315, 1182
Eco147I	AGGCCT	1 cut(s)	276
Eco31I	GGTCTC	2 cut(s)	564, 1062
Eco47I	GGWCC	1 cut(s)	304
Eco57I	CTGAAG	1 cut(s)	1010
EcoNI	CCTNNNNNAGG	1 cut(s)	270
EcoO109I	RGGNCCY	1 cut(s)	599
EcoRII	CCWGG	1 cut(s)	276
FaeI	CATG	5 cut(s)	259, 512, 785, 876, 997
FalI	AAGNNNNNCTT	2 cut(s)	1024, 1056
FatI	CATG	5 cut(s)	255, 508, 781, 872, 993
FauNDI	CATATG	1 cut(s)	703
Fnu4HI	GCNGC	6 cut(s)	438, 614, 697, 945, 1081, 1084
Fsp4HI	GCNGC	6 cut(s)	438, 614, 697, 945, 1081, 1084
FspBI	CTAG	2 cut(s)	900, 1107
GluI	GCNGC	6 cut(s)	438, 614, 697, 945, 1081, 1084
GsaI	CCCAGC	1 cut(s)	507
GsuI	CTGGAG	1 cut(s)	750
HaeIII	GGCC	4 cut(s)	251, 264, 276, 601
Hin1II	CATG	5 cut(s)	259, 512, 785, 876, 997
HinfI	GANTC	1 cut(s)	903
HphI	GGTGA	1 cut(s)	1103
Hpy188III	TCNNGA	3 cut(s)	605, 767, 989
HpyAV	CCTTC	1 cut(s)	473
HpyCH4III	ACNGT	3 cut(s)	423, 679, 1170
HpyCH4IV	ACGT	1 cut(s)	853
HpyF10VI	GCNNNNNNNGC	4 cut(s)	221, 509, 1010, 1036
HpyF3I	CTNAG	5 cut(s)	43, 450, 549, 1087, 1189
HpySE526I	ACGT	1 cut(s)	853
Hsp92II	CATG	5 cut(s)	259, 512, 785, 876, 997
Kzo9I	GATC	3 cut(s)	13, 802, 1093
LmnI	GCTCC	1 cut(s)	576
Lsp1109I	GCAGC	4 cut(s)	449, 600, 708, 931
LweI	GCATC	2 cut(s)	177, 1136
MaeI	CTAG	2 cut(s)	900, 1107
MaeII	ACGT	1 cut(s)	853
MaeIII	GTNAC	2 cut(s)	685, 1141
MalI	GATC	3 cut(s)	15, 804, 1095
MboI	GATC	3 cut(s)	13, 802, 1093
MboII	GAAGA	5 cut(s)	302, 739, 1016, 1059, 1169
MfeI	CAATTG	1 cut(s)	384
MlyI	GAGTC	1 cut(s)	912
MseI	TTAA	4 cut(s)	192, 432, 461, 1194
MspA1I	CMGCKG	2 cut(s)	47, 155
MspR9I	CCNGG	1 cut(s)	278
MunI	CAATTG	1 cut(s)	384
MvaI	CCWGG	1 cut(s)	278
MwoI	GCNNNNNNNGC	4 cut(s)	221, 509, 1010, 1036
NdeI	CATATG	1 cut(s)	703
NdeII	GATC	3 cut(s)	13, 802, 1093
NheI	GCTAGC	1 cut(s)	1106
NlaIII	CATG	5 cut(s)	259, 512, 785, 876, 997
NlaIV	GGNNCC	2 cut(s)	306, 1038
NmuCI	GTSAC	1 cut(s)	685
NspI	RCATGY	3 cut(s)	512, 785, 876
PaeI	GCATGC	2 cut(s)	512, 785
PceI	AGGCCT	1 cut(s)	276
PciI	ACATGT	1 cut(s)	872
PflMI	CCANNNNNTGG	1 cut(s)	832
PkrI	GCNGC	6 cut(s)	439, 615, 698, 946, 1082, 1085
PleI	GAGTC	1 cut(s)	911
PpsI	GAGTC	1 cut(s)	911
PscI	ACATGT	1 cut(s)	872
PshBI	ATTAAT	1 cut(s)	432
PsiI	TTATAA	1 cut(s)	131
Psp1406I	AACGTT	1 cut(s)	853
Psp6I	CCWGG	1 cut(s)	276
PspFI	CCCAGC	1 cut(s)	503
PspGI	CCWGG	1 cut(s)	276
PspN4I	GGNNCC	2 cut(s)	306, 1038
PspPI	GGNCC	3 cut(s)	263, 304, 599
PvuII	CAGCTG	2 cut(s)	47, 155
RsaI	GTAC	2 cut(s)	656, 916
RsaNI	GTAC	2 cut(s)	655, 915
SaqAI	TTAA	4 cut(s)	192, 432, 461, 1194
SatI	GCNGC	6 cut(s)	438, 614, 697, 945, 1081, 1084
Sau3AI	GATC	3 cut(s)	13, 802, 1093
Sau96I	GGNCC	3 cut(s)	263, 304, 599
SchI	GAGTC	1 cut(s)	912
ScrFI	CCNGG	1 cut(s)	278
SfaNI	GCATC	2 cut(s)	177, 1136
SinI	GGWCC	1 cut(s)	304
SmlI	CTYRAG	1 cut(s)	603
SmoI	CTYRAG	1 cut(s)	603
SphI	GCATGC	2 cut(s)	512, 785
SseBI	AGGCCT	1 cut(s)	276
SsiI	CCGC	2 cut(s)	1080, 1083
SspMI	CTAG	2 cut(s)	900, 1107
StuI	AGGCCT	1 cut(s)	276
StyD4I	CCNGG	1 cut(s)	276
TaaI	ACNGT	3 cut(s)	423, 679, 1170
TaiI	ACGT	1 cut(s)	856
TaqI	TCGA	2 cut(s)	16, 1130
TauI	GCSGC	2 cut(s)	1083, 1086
Tru1I	TTAA	4 cut(s)	192, 432, 461, 1194
Tru9I	TTAA	4 cut(s)	192, 432, 461, 1194
TscAI	CASTG	2 cut(s)	682, 1155
TseFI	GTSAC	1 cut(s)	685
TseI	GCWGC	4 cut(s)	437, 613, 696, 944
Tsp45I	GTSAC	1 cut(s)	685
TspDTI	ATGAA	4 cut(s)	831, 1033, 1105, 1169
TspRI	CASTG	2 cut(s)	682, 1155
Van91I	CCANNNNNTGG	1 cut(s)	832
VpaK11BI	GGWCC	1 cut(s)	304
VspI	ATTAAT	1 cut(s)	432
XagI	CCTNNNNNAGG	1 cut(s)	270
XapI	RAATTY	6 cut(s)	147, 289, 647, 1112, 1135, 1157
XceI	RCATGY	3 cut(s)	512, 785, 876
XspI	CTAG	2 cut(s)	900, 1107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.