RchiOBHm_Chr6g0306011
ERF Family

Phosphorylase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000829
Physical Location & Seq
Forward (+)
64791659 .. 64795680
4022 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27503

Sequence Viewer

Length: 1068 bp
ATGGGGGTAGCTTGGCCCTGCGTAGTTCTTTATGCTGCGAGCATCAGCTTGATGATGCTCAACGGAGTAGTGTGTGCTGCACTATCTGAAGAAACATTGGAATTTATAGCCGAGGCCAACAAGAATGGCCCTTATTTAGGCTTGGTCATTCCAAATTCTTTCGAAATGGATCCTCTCCTTCAATCTCCGAACTTCACTTCCTCTAATTTGACTATAGATTTTTCTGGAGATTTCGGTTTGGAACGATTGCTGAAAAAAGTCATATTAGTCATGACCGGACTTGCCATGATTAATGCAGGAATAACCACTCAGCTCTTACTAAGCTTATTCGATATAGAAGGGGTGGTGCATTATGGCATAGCTGGCAATGCAAACCCAGATCTCCATCTTGCAGATGTGGTCATTCCTCAGTATTGGGCGCATACTGCTCTTTGGAACTGGCAGGTAAATATGGAAATGGACCAGAAGATGAGCTACCTTGAATCACAAGGAGACTACACCAGAGACATTGGCTACTTAAAATTTGCAAATTATACAGTCAATATGACAGATAGAAGCTCATACGACAACCTGTTGAACAATATCTGGTATCAACCGGAGGAAGTCTTCCCCGTCGATGGAACTCCAGAACAAAGAGAGCATGCCTTTTGGATCCCTGTTGATCCATTCTACTATGAAGTTTCCCAAAAGCTAGAGGATGTGAGACTGGAAGGTTGCCTAAACTCAACGACGTGTTTGTCACATACACCAAGAGTGGCAAGAGTCCAAAGGGGAACGAGTGCAAGCATTTACCTTGACAGTGCTGCATATCGCGACTTCATATATGATAAGTTCAACATAACTCCGGTGTCTATGGAAAGTGCTTCTGTTGCTTTGATATGTCTTCAACAAAAGGTGTCTTTCATTGTCATCAGAGCGCTCTCTGACTTGGCCGGTGGTGGCTCTGCAGATTCGAATGAGGCTGACACTTTCGTCACTCTTGCTTCCAACAATTCAGTCACAGTTCTTTTGGAATTTGTGAAACACTTATCTACTGCTACTATCTCATTGAGCAACATCAATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNP_UDP_1

Protein Analysis

355

Amino Acids

39.34

Weight (kDa)

4.5

Isoelectric Point (pI)

31.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNP_UDP_1 PF01048 81 - 341 6.6e-22 Phosphorylase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 736, 971
Acc36I ACCTGC 1 cut(s) 433
AccII CGCG 1 cut(s) 813
AclWI GGATC 5 cut(s) 164, 177, 646, 656, 659
AcoI YGGCCR 1 cut(s) 930
AcsI RAATTY 4 cut(s) 101, 154, 521, 1013
AcuI CTGAAG 1 cut(s) 108
AfeI AGCGCT 1 cut(s) 918
AfiI CCNNNNNNNGG 2 cut(s) 137, 617
AflIII ACRYGT 1 cut(s) 731
AgsI TTSAA 5 cut(s) 182, 482, 577, 835, 887
AjiI CACGTC 1 cut(s) 732
AloI GAACNNNNNNTCC 2 cut(s) 182, 214
AluBI AGCT 8 cut(s) 11, 48, 313, 324, 362, 474, 558, 691
AluI AGCT 8 cut(s) 11, 48, 313, 324, 362, 474, 558, 691
Alw26I GTCTC 3 cut(s) 486, 498, 697
AlwI GGATC 5 cut(s) 164, 177, 646, 656, 659
Aor51HI AGCGCT 1 cut(s) 918
AoxI GGCC 4 cut(s) 14, 114, 127, 930
ApeKI GCWGC 3 cut(s) 35, 77, 803
ApoI RAATTY 4 cut(s) 101, 154, 521, 1013
AseI ATTAAT 1 cut(s) 291
AspLEI GCGC 2 cut(s) 421, 919
AspS9I GGNCC 3 cut(s) 15, 128, 460
AsuII TTCGAA 2 cut(s) 162, 953
AvaII GGWCC 1 cut(s) 460
BamHI GGATCC 2 cut(s) 169, 651
BarI GAAGNNNNNNTAC 2 cut(s) 458, 490
BbsI GAAGAC 2 cut(s) 598, 875
BbvI GCAGC 3 cut(s) 22, 64, 790
BccI CCATC 2 cut(s) 393, 611
BcoDI GTCTC 3 cut(s) 486, 498, 697
BfaI CTAG 1 cut(s) 692
BfmI CTRYAG 2 cut(s) 213, 945
BfoI RGCGCY 1 cut(s) 920
BfuAI ACCTGC 1 cut(s) 433
BglII AGATCT 1 cut(s) 379
BisI GCNGC 3 cut(s) 36, 78, 804
BlsI GCNGC 3 cut(s) 37, 79, 805
Bme18I GGWCC 1 cut(s) 460
BmgBI CACGTC 1 cut(s) 732
BmgT120I GGNCC 3 cut(s) 15, 128, 460
BmiI GGNNCC 2 cut(s) 171, 653
BmsI GCATC 2 cut(s) 45, 51
BpiI GAAGAC 2 cut(s) 598, 875
BpmI CTGGAG 2 cut(s) 246, 609
Bpu14I TTCGAA 2 cut(s) 162, 953
BsaBI GATNNNNATC 1 cut(s) 384
BsaJI CCNNGG 1 cut(s) 111
BsaWI WCCGGW 3 cut(s) 275, 595, 844
Bsc4I CCNNNNNNNGG 2 cut(s) 137, 617
Bse118I RCCGGY 1 cut(s) 932
Bse1I ACTGG 2 cut(s) 443, 711
Bse3DI GCAATG 1 cut(s) 373
Bse8I GATNNNNATC 1 cut(s) 384
BseDI CCNNGG 1 cut(s) 111
BseGI GGATG 1 cut(s) 703
BseJI GATNNNNATC 1 cut(s) 384
BseLI CCNNNNNNNGG 2 cut(s) 137, 617
BseMI GCAATG 1 cut(s) 373
BseMII CTCAG 2 cut(s) 323, 422
BseNI ACTGG 2 cut(s) 443, 711
BseXI GCAGC 3 cut(s) 22, 64, 790
BsgI GTGCAG 1 cut(s) 63
Bsh1236I CGCG 1 cut(s) 813
BshFI GGCC 4 cut(s) 16, 116, 129, 932
BsiSI CCGG 4 cut(s) 276, 596, 845, 933
BslI CCNNNNNNNGG 2 cut(s) 137, 617
BsmAI GTCTC 3 cut(s) 486, 498, 697
BsnI GGCC 4 cut(s) 16, 116, 129, 932
Bsp119I TTCGAA 2 cut(s) 162, 953
Bsp143I GATC 4 cut(s) 169, 379, 651, 661
Bsp68I TCGCGA 1 cut(s) 813
BspANI GGCC 4 cut(s) 16, 116, 129, 932
BspCNI CTCAG 2 cut(s) 322, 421
BspFNI CGCG 1 cut(s) 813
BspHI TCATGA 1 cut(s) 270
BspLI GGNNCC 2 cut(s) 171, 653
BspMAI CTGCAG 1 cut(s) 949
BspMI ACCTGC 1 cut(s) 433
BspPI GGATC 5 cut(s) 164, 177, 646, 656, 659
BspT104I TTCGAA 2 cut(s) 162, 953
BsrDI GCAATG 1 cut(s) 373
BsrFI RCCGGY 1 cut(s) 932
BsrI ACTGG 2 cut(s) 443, 711
BssAI RCCGGY 1 cut(s) 932
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 4 cut(s) 169, 379, 651, 661
Bst4CI ACNGT 3 cut(s) 538, 800, 1003
BstBI TTCGAA 2 cut(s) 162, 953
BstC8I GCNNGC 4 cut(s) 40, 364, 642, 784
BstDEI CTNAG 3 cut(s) 309, 320, 408
BstENI CCTNNNNNAGG 1 cut(s) 135
BstF5I GGATG 1 cut(s) 703
BstFNI CGCG 1 cut(s) 813
BstH2I RGCGCY 1 cut(s) 920
BstHHI GCGC 2 cut(s) 421, 919
BstKTI GATC 4 cut(s) 172, 382, 654, 664
BstMAI GTCTC 3 cut(s) 486, 498, 697
BstMBI GATC 4 cut(s) 169, 379, 651, 661
BstMWI GCNNNNNNNGC 4 cut(s) 363, 368, 425, 869
BstNSI RCATGY 1 cut(s) 644
BstSFI CTRYAG 2 cut(s) 213, 945
BstUI CGCG 1 cut(s) 813
BstV1I GCAGC 3 cut(s) 22, 64, 790
BstV2I GAAGAC 2 cut(s) 598, 875
BstX2I RGATCY 3 cut(s) 169, 379, 651
BstYI RGATCY 3 cut(s) 169, 379, 651
BsuRI GGCC 4 cut(s) 16, 116, 129, 932
BtrI CACGTC 1 cut(s) 732
BtsCI GGATG 1 cut(s) 703
BtsIMutI CAGTG 1 cut(s) 805
BtuMI TCGCGA 1 cut(s) 813
BveI ACCTGC 1 cut(s) 433
Cac8I GCNNGC 4 cut(s) 40, 364, 642, 784
CciI TCATGA 1 cut(s) 270
CfoI GCGC 2 cut(s) 421, 919
Cfr10I RCCGGY 1 cut(s) 932
Cfr13I GGNCC 3 cut(s) 15, 128, 460
CviAII CATG 3 cut(s) 271, 286, 641
DdeI CTNAG 3 cut(s) 309, 320, 408
DpnI GATC 4 cut(s) 171, 381, 653, 663
DpnII GATC 4 cut(s) 169, 379, 651, 661
DrdI GACNNNNNNGTC 2 cut(s) 736, 971
DseDI GACNNNNNNGTC 2 cut(s) 736, 971
EaeI YGGCCR 1 cut(s) 930
Eco47I GGWCC 1 cut(s) 460
Eco47III AGCGCT 1 cut(s) 918
Eco57I CTGAAG 1 cut(s) 108
EcoNI CCTNNNNNAGG 1 cut(s) 135
FaeI CATG 3 cut(s) 274, 289, 644
FatI CATG 3 cut(s) 270, 285, 640
Fnu4HI GCNGC 3 cut(s) 36, 78, 804
FokI GGATG 1 cut(s) 710
Fsp4HI GCNGC 3 cut(s) 36, 78, 804
FspBI CTAG 1 cut(s) 692
GlaI GCGC 2 cut(s) 420, 918
GluI GCNGC 3 cut(s) 36, 78, 804
GsuI CTGGAG 2 cut(s) 246, 609
HaeII RGCGCY 1 cut(s) 920
HaeIII GGCC 4 cut(s) 16, 116, 129, 932
HapII CCGG 4 cut(s) 276, 596, 845, 933
HhaI GCGC 2 cut(s) 421, 919
Hin1II CATG 3 cut(s) 274, 289, 644
Hin6I GCGC 2 cut(s) 419, 917
HinP1I GCGC 2 cut(s) 419, 917
HindIII AAGCTT 1 cut(s) 322
HinfI GANTC 3 cut(s) 482, 762, 950
HpaII CCGG 4 cut(s) 276, 596, 845, 933
Hpy188I TCNGA 4 cut(s) 88, 189, 914, 925
Hpy188III TCNNGA 4 cut(s) 225, 271, 626, 812
Hpy99I CGWCG 2 cut(s) 617, 733
HpyAV CCTTC 3 cut(s) 188, 332, 704
HpyCH4III ACNGT 3 cut(s) 538, 800, 1003
HpyCH4IV ACGT 1 cut(s) 731
HpyCH4V TGCA 9 cut(s) 80, 296, 349, 371, 392, 527, 782, 806, 947
HpyF10VI GCNNNNNNNGC 4 cut(s) 363, 368, 425, 869
HpyF3I CTNAG 3 cut(s) 309, 320, 408
HpySE526I ACGT 1 cut(s) 731
Hsp92II CATG 3 cut(s) 274, 289, 644
HspAI GCGC 2 cut(s) 419, 917
Kzo9I GATC 4 cut(s) 169, 379, 651, 661
Lsp1109I GCAGC 3 cut(s) 22, 64, 790
LweI GCATC 2 cut(s) 45, 51
MaeI CTAG 1 cut(s) 692
MaeII ACGT 1 cut(s) 731
MaeIII GTNAC 3 cut(s) 738, 973, 997
MalI GATC 4 cut(s) 171, 381, 653, 663
MboI GATC 4 cut(s) 169, 379, 651, 661
MboII GAAGA 4 cut(s) 101, 478, 598, 875
MflI RGATCY 3 cut(s) 169, 379, 651
MluCI AATT 7 cut(s) 101, 154, 205, 521, 529, 991, 1013
MlyI GAGTC 1 cut(s) 771
MmeI TCCRAC 1 cut(s) 1011
MnlI CCTC 7 cut(s) 106, 183, 211, 417, 592, 688, 952
MseI TTAA 3 cut(s) 291, 518, 1066
MspI CCGG 4 cut(s) 276, 596, 845, 933
MvnI CGCG 1 cut(s) 813
MwoI GCNNNNNNNGC 4 cut(s) 363, 368, 425, 869
NdeII GATC 4 cut(s) 169, 379, 651, 661
NlaIII CATG 3 cut(s) 274, 289, 644
NlaIV GGNNCC 2 cut(s) 171, 653
NmeAIII GCCGAG 1 cut(s) 136
NmuCI GTSAC 3 cut(s) 738, 973, 997
NruI TCGCGA 1 cut(s) 813
NspI RCATGY 1 cut(s) 644
NspV TTCGAA 2 cut(s) 162, 953
PaeI GCATGC 1 cut(s) 644
PagI TCATGA 1 cut(s) 270
PfeI GAWTC 2 cut(s) 482, 950
PkrI GCNGC 3 cut(s) 37, 79, 805
PleI GAGTC 1 cut(s) 770
PpsI GAGTC 1 cut(s) 770
PshBI ATTAAT 1 cut(s) 291
PspN4I GGNNCC 2 cut(s) 171, 653
PspPI GGNCC 3 cut(s) 15, 128, 460
PstI CTGCAG 1 cut(s) 949
PsuI RGATCY 3 cut(s) 169, 379, 651
RruI TCGCGA 1 cut(s) 813
SaqAI TTAA 3 cut(s) 291, 518, 1066
SatI GCNGC 3 cut(s) 36, 78, 804
Sau3AI GATC 4 cut(s) 169, 379, 651, 661
Sau96I GGNCC 3 cut(s) 15, 128, 460
SchI GAGTC 1 cut(s) 771
SfaNI GCATC 2 cut(s) 45, 51
SfcI CTRYAG 2 cut(s) 213, 945
SfuI TTCGAA 2 cut(s) 162, 953
SinI GGWCC 1 cut(s) 460
SphI GCATGC 1 cut(s) 644
Sse9I AATT 7 cut(s) 101, 154, 205, 521, 529, 991, 1013
SspMI CTAG 1 cut(s) 692
TaaI ACNGT 3 cut(s) 538, 800, 1003
TaiI ACGT 1 cut(s) 734
TaqI TCGA 4 cut(s) 162, 330, 615, 953
TasI AATT 7 cut(s) 101, 154, 205, 521, 529, 991, 1013
TfiI GAWTC 2 cut(s) 482, 950
Tru1I TTAA 3 cut(s) 291, 518, 1066
Tru9I TTAA 3 cut(s) 291, 518, 1066
TscAI CASTG 1 cut(s) 805
TseFI GTSAC 3 cut(s) 738, 973, 997
TseI GCWGC 3 cut(s) 35, 77, 803
Tsp45I GTSAC 3 cut(s) 738, 973, 997
TspDTI ATGAA 3 cut(s) 690, 808, 892
TspGWI ACGGA 1 cut(s) 78
TspRI CASTG 1 cut(s) 805
VpaK11BI GGWCC 1 cut(s) 460
VspI ATTAAT 1 cut(s) 291
XagI CCTNNNNNAGG 1 cut(s) 135
XapI RAATTY 4 cut(s) 101, 154, 521, 1013
XceI RCATGY 1 cut(s) 644
XspI CTAG 1 cut(s) 692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.