Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000829

Physical Location & Seq

Genomic Coordinates Forward (+)

36734232 .. 36736288

Gene Structure 2057 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029340

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGGGGTAGCTTGGCCCTGCGTGGTTGTTTATTCTATGAGCATCAGTTTGATGATGCTCAACCGAGTAGTGCAGCACATAAGTGCTGCACTATCTCAAGAGACACTGGAATTGATAGCCAAGGCTAACGAGAATGGCCCTTATTTAGGCTTGGTCATTCCTAATTCTTTCGAGATGGATCCTCTCCTTCAATCTCCAAACTTCACTTCCTCTAATTTGACTATGGATTTTTCTGGAAGGAGATTTCGGTTTGGAACGATTGCTGAAAAAAAAGTCATATTAGTCATGACCGGACTTGCCATGATTAATGCAGGAATAGCCACTCAGCTCTTGCTAAGCCTATTCAATATAGAAGGAGTGGTGCATTATGGCATAGCTGGCAATGCAAACCCAGATCTCCATCTTGCAGATGTGGTCATTCCTCAGTATTGGGCGCATACTGCTCTTTGGAACTGGCAGAGATATGGAAATGGACCAGAAGATGAGCTACCCCTTGAATCACAAGGAGACTACACCAGAGACATTGGCTACTTAAAATTTGCAAATTATACAGTCAATGTGACAGATGGAAGCTCATACGACAACTTGTTGAACAATATCTGGTATCAACCGGAGGAAGTCTTCCCCGTCAATGGAACTCCAGAACAAAGAGAGCACGCCTTTTGGATCCCTGTTGATCCATTCTACTATGAAGTTTCCCAAAAGCTAGAGGATGTGATACTGCAAGGTTGCCTAAACTCAACGACGTGTTTGTCACATACACCAAGAGTGGCAAGAGTCCAAAGGGGAACAAGTGCAAGCATTTACCTAGACAATGCTGCATATCGCGACTTCATATATCATGAGTTCAACATAACTCCGGTGGATATGGAAAGTGCTTCTGTTGCTTTAATATGTCTTCAGCAAAAGGTGCCTTTCATTGTCATCAGAGCACTCTCTGACTTGGCCGGTGGTGGGTCTGCAGATTCAAATGAGGCTGACACTTTCGTCACTCTTGCTTCCAATAATTCAGTCACAGTTCTTTTGGAATTTGTCAAACACTTGTCTGCTGCTACTATCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNP_UDP_1

Protein Analysis

355

Amino Acids

39.22

Weight (kDa)

4.74

Isoelectric Point (pI)

33.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PNP_UDP_1	PF01048	50 - 346	6.5e-30	Phosphorylase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28940 AT4G28940
fragaria_vesca	FvH4_1g05530 FvH4_2g35741 FvH4_2g35750 FvH4_2g35760 FvH4_2g35761 FvH4_2g35762
malus_domestica	MD15G1095100.v1.1 MD15G1095200.v1.1 MD15G1095300.v1.1 MD15G1191300.v1.1
prunus_persica	Prupe.1G450100_v2.0.a1 Prupe.1G450200_v2.0.a1 Prupe.7G225900_v2.0.a1 Prupe.7G225900_v2.0.a1 Prupe.7G225900_v2.0.a1
pyrus_communis	pycom15g08760 pycom15g08770 pycom15g17130
rosa_chinensis	RchiOBHm_Chr1g0336711 RchiOBHm_Chr2g0091231 RchiOBHm_Chr6g0259261 RchiOBHm_Chr6g0259271 RchiOBHm_Chr6g0306011 RchiOBHm_Chr6g0306021
rosa_laevigata	RLG00000010830 RLG00000010831 RLG00000010832 RLG00000014544 RLG00000016193 RLG00000029340
rosa_multiflora	Rmu_sc0002270.1_g000016 Rmu_sc0011974.1_g000004 Rmu_sc0020534.1_g000001 Rmu_sc0035114.1_g000001 Rmu_sc0036553.1_g000001 Rmu_ssc0000050.1_g000090
rosa_roxburghii	Rroxscaffold_2G00150370 Rroxscaffold_7G00162110 Rroxscaffold_7G00162130
rosa_rugosa	Rorug02G0014600 Rorug06G0346400 Rorug06G0346600
rosa_samantha	Rh2AG060400 Rh2BG059100 Rh2CG060900 Rh2DG059700 Rh6AG103200 Rh6AG458200 Rh6AG458400 Rh6BG095600 Rh6BG442400 Rh6BG442500 Rh6BG442600 Rh6BG442700 Rh6CG092500 Rh6CG472700 Rh6CG472800 Rh6CG472900 Rh6DG086500 Rh6DG458800 Rh6DG459000 Rh6DG459100
rosa_wichuraiana	Rw2G004950 Rw6G008910 Rw6G039960 Rw6G039970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	751, 986
AccB1I	GGYRCC	1 cut(s)	910
AccII	CGCG	1 cut(s)	828
AclWI	GGATC	5 cut(s)	173, 186, 661, 671, 674
AcoI	YGGCCR	1 cut(s)	945
AcsI	RAATTY	2 cut(s)	536, 1028
AcuI	CTGAAG	1 cut(s)	884
AfiI	CCNNNNNNNGG	3 cut(s)	146, 632, 954
AflIII	ACRYGT	1 cut(s)	746
AgsI	TTSAA	6 cut(s)	191, 346, 497, 592, 850, 969
AjiI	CACGTC	1 cut(s)	747
AjuI	GAANNNNNNNTTGG	2 cut(s)	190, 222
AleI	CACNNNNGTG	1 cut(s)	81
AluBI	AGCT	6 cut(s)	11, 328, 377, 487, 573, 706
AluI	AGCT	6 cut(s)	11, 328, 377, 487, 573, 706
Alw21I	GWGCWC	2 cut(s)	657, 934
Alw26I	GTCTC	3 cut(s)	95, 501, 513
AlwI	GGATC	5 cut(s)	173, 186, 661, 671, 674
AoxI	GGCC	3 cut(s)	14, 136, 945
ApeKI	GCWGC	4 cut(s)	73, 86, 818, 1049
ApoI	RAATTY	2 cut(s)	536, 1028
AseI	ATTAAT	1 cut(s)	306
AspLEI	GCGC	1 cut(s)	436
AspS9I	GGNCC	3 cut(s)	15, 137, 473
AvaII	GGWCC	1 cut(s)	473
BamHI	GGATCC	2 cut(s)	178, 666
BanI	GGYRCC	1 cut(s)	910
BarI	GAAGNNNNNNTAC	2 cut(s)	471, 503
BbsI	GAAGAC	2 cut(s)	613, 890
Bbv12I	GWGCWC	2 cut(s)	657, 934
BbvI	GCAGC	4 cut(s)	73, 85, 805, 1036
BccI	CCATC	3 cut(s)	169, 408, 560
BcoDI	GTCTC	3 cut(s)	95, 501, 513
BfaI	CTAG	2 cut(s)	707, 809
BfmI	CTRYAG	1 cut(s)	960
BglII	AGATCT	1 cut(s)	394
BisI	GCNGC	4 cut(s)	74, 87, 819, 1050
BlpI	GCTNAGC	1 cut(s)	335
BlsI	GCNGC	4 cut(s)	75, 88, 820, 1051
Bme18I	GGWCC	1 cut(s)	473
BmgBI	CACGTC	1 cut(s)	747
BmgT120I	GGNCC	3 cut(s)	15, 137, 473
BmiI	GGNNCC	3 cut(s)	180, 668, 912
BmsI	GCATC	2 cut(s)	45, 51
BpiI	GAAGAC	2 cut(s)	613, 890
BpmI	CTGGAG	1 cut(s)	624
Bpu1102I	GCTNAGC	1 cut(s)	335
BpuEI	CTTGAG	1 cut(s)	81
BsaBI	GATNNNNATC	1 cut(s)	399
BsaJI	CCNNGG	1 cut(s)	120
BsaWI	WCCGGW	3 cut(s)	290, 610, 859
Bsc4I	CCNNNNNNNGG	3 cut(s)	146, 632, 954
Bse118I	RCCGGY	1 cut(s)	947
Bse1I	ACTGG	2 cut(s)	111, 458
Bse3DI	GCAATG	1 cut(s)	388
Bse8I	GATNNNNATC	1 cut(s)	399
BseDI	CCNNGG	1 cut(s)	120
BseGI	GGATG	1 cut(s)	718
BseJI	GATNNNNATC	1 cut(s)	399
BseLI	CCNNNNNNNGG	3 cut(s)	146, 632, 954
BseMI	GCAATG	1 cut(s)	388
BseMII	CTCAG	2 cut(s)	338, 437
BseNI	ACTGG	2 cut(s)	111, 458
BseXI	GCAGC	4 cut(s)	73, 85, 805, 1036
BsgI	GTGCAG	2 cut(s)	72, 92
Bsh1236I	CGCG	1 cut(s)	828
BshFI	GGCC	3 cut(s)	16, 138, 947
BshNI	GGYRCC	1 cut(s)	910
BsiHKAI	GWGCWC	2 cut(s)	657, 934
BsiSI	CCGG	4 cut(s)	291, 611, 860, 948
BslI	CCNNNNNNNGG	3 cut(s)	146, 632, 954
BsmAI	GTCTC	3 cut(s)	95, 501, 513
BsnI	GGCC	3 cut(s)	16, 138, 947
Bsp1286I	GDGCHC	2 cut(s)	657, 934
Bsp143I	GATC	4 cut(s)	178, 394, 666, 676
Bsp1720I	GCTNAGC	1 cut(s)	335
Bsp68I	TCGCGA	1 cut(s)	828
BspANI	GGCC	3 cut(s)	16, 138, 947
BspCNI	CTCAG	2 cut(s)	337, 436
BspFNI	CGCG	1 cut(s)	828
BspHI	TCATGA	3 cut(s)	285, 841, 1061
BspLI	GGNNCC	3 cut(s)	180, 668, 912
BspMAI	CTGCAG	1 cut(s)	964
BspPI	GGATC	5 cut(s)	173, 186, 661, 671, 674
BspT107I	GGYRCC	1 cut(s)	910
BsrDI	GCAATG	1 cut(s)	388
BsrFI	RCCGGY	1 cut(s)	947
BsrI	ACTGG	2 cut(s)	111, 458
BssAI	RCCGGY	1 cut(s)	947
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	4 cut(s)	178, 394, 666, 676
BssT1I	CCWWGG	1 cut(s)	120
Bst4CI	ACNGT	2 cut(s)	553, 1018
BstAPI	GCANNNNNTGC	1 cut(s)	910
BstC8I	GCNNGC	3 cut(s)	379, 657, 799
BstDEI	CTNAG	3 cut(s)	324, 335, 423
BstENI	CCTNNNNNAGG	1 cut(s)	144
BstF5I	GGATG	1 cut(s)	718
BstFNI	CGCG	1 cut(s)	828
BstHHI	GCGC	1 cut(s)	436
BstKTI	GATC	4 cut(s)	181, 397, 669, 679
BstMAI	GTCTC	3 cut(s)	95, 501, 513
BstMBI	GATC	4 cut(s)	178, 394, 666, 676
BstMWI	GCNNNNNNNGC	6 cut(s)	317, 378, 383, 440, 884, 910
BstSFI	CTRYAG	1 cut(s)	960
BstUI	CGCG	1 cut(s)	828
BstV1I	GCAGC	4 cut(s)	73, 85, 805, 1036
BstV2I	GAAGAC	2 cut(s)	613, 890
BstX2I	RGATCY	3 cut(s)	178, 394, 666
BstYI	RGATCY	3 cut(s)	178, 394, 666
BsuRI	GGCC	3 cut(s)	16, 138, 947
BtrI	CACGTC	1 cut(s)	747
BtsCI	GGATG	1 cut(s)	718
BtsIMutI	CAGTG	1 cut(s)	104
BtuMI	TCGCGA	1 cut(s)	828
Cac8I	GCNNGC	3 cut(s)	379, 657, 799
CciI	TCATGA	3 cut(s)	285, 841, 1061
CfoI	GCGC	1 cut(s)	436
Cfr10I	RCCGGY	1 cut(s)	947
Cfr13I	GGNCC	3 cut(s)	15, 137, 473
CviAII	CATG	4 cut(s)	286, 301, 842, 1062
DdeI	CTNAG	3 cut(s)	324, 335, 423
DpnI	GATC	4 cut(s)	180, 396, 668, 678
DpnII	GATC	4 cut(s)	178, 394, 666, 676
DrdI	GACNNNNNNGTC	2 cut(s)	751, 986
DseDI	GACNNNNNNGTC	2 cut(s)	751, 986
EaeI	YGGCCR	1 cut(s)	945
Eco130I	CCWWGG	1 cut(s)	120
Eco47I	GGWCC	1 cut(s)	473
Eco57I	CTGAAG	1 cut(s)	884
EcoNI	CCTNNNNNAGG	1 cut(s)	144
EcoT14I	CCWWGG	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	4 cut(s)	289, 304, 845, 1065
FatI	CATG	4 cut(s)	285, 300, 841, 1061
Fnu4HI	GCNGC	4 cut(s)	74, 87, 819, 1050
FokI	GGATG	1 cut(s)	725
Fsp4HI	GCNGC	4 cut(s)	74, 87, 819, 1050
FspBI	CTAG	2 cut(s)	707, 809
GlaI	GCGC	1 cut(s)	435
GluI	GCNGC	4 cut(s)	74, 87, 819, 1050
GsuI	CTGGAG	1 cut(s)	624
HaeIII	GGCC	3 cut(s)	16, 138, 947
HapII	CCGG	4 cut(s)	291, 611, 860, 948
HhaI	GCGC	1 cut(s)	436
Hin1II	CATG	4 cut(s)	289, 304, 845, 1065
Hin6I	GCGC	1 cut(s)	434
HinP1I	GCGC	1 cut(s)	434
HinfI	GANTC	3 cut(s)	497, 777, 965
HpaII	CCGG	4 cut(s)	291, 611, 860, 948
Hpy188I	TCNGA	2 cut(s)	929, 940
Hpy188III	TCNNGA	8 cut(s)	98, 172, 234, 286, 641, 827, 842, 1062
Hpy99I	CGWCG	1 cut(s)	748
HpyAV	CCTTC	3 cut(s)	197, 231, 347
HpyCH4III	ACNGT	2 cut(s)	553, 1018
HpyCH4IV	ACGT	1 cut(s)	746
HpyF10VI	GCNNNNNNNGC	6 cut(s)	317, 378, 383, 440, 884, 910
HpyF3I	CTNAG	3 cut(s)	324, 335, 423
HpySE526I	ACGT	1 cut(s)	746
Hsp92II	CATG	4 cut(s)	289, 304, 845, 1065
HspAI	GCGC	1 cut(s)	434
Kzo9I	GATC	4 cut(s)	178, 394, 666, 676
Lsp1109I	GCAGC	4 cut(s)	73, 85, 805, 1036
LweI	GCATC	2 cut(s)	45, 51
MaeI	CTAG	2 cut(s)	707, 809
MaeII	ACGT	1 cut(s)	746
MaeIII	GTNAC	4 cut(s)	559, 753, 988, 1012
MalI	GATC	4 cut(s)	180, 396, 668, 678
MboI	GATC	4 cut(s)	178, 394, 666, 676
MboII	GAAGA	3 cut(s)	491, 613, 890
MflI	RGATCY	3 cut(s)	178, 394, 666
MhlI	GDGCHC	2 cut(s)	657, 934
MluCI	AATT	7 cut(s)	110, 163, 214, 536, 544, 1006, 1028
MlyI	GAGTC	1 cut(s)	786
MnlI	CCTC	6 cut(s)	192, 220, 432, 607, 703, 967
MseI	TTAA	3 cut(s)	306, 533, 890
MslI	CAYNNNNRTG	1 cut(s)	81
MspI	CCGG	4 cut(s)	291, 611, 860, 948
MvnI	CGCG	1 cut(s)	828
MwoI	GCNNNNNNNGC	6 cut(s)	317, 378, 383, 440, 884, 910
NdeII	GATC	4 cut(s)	178, 394, 666, 676
NlaIII	CATG	4 cut(s)	289, 304, 845, 1065
NlaIV	GGNNCC	3 cut(s)	180, 668, 912
NmuCI	GTSAC	4 cut(s)	559, 753, 988, 1012
NruI	TCGCGA	1 cut(s)	828
OliI	CACNNNNGTG	1 cut(s)	81
PagI	TCATGA	3 cut(s)	285, 841, 1061
PfeI	GAWTC	2 cut(s)	497, 965
PkrI	GCNGC	4 cut(s)	75, 88, 820, 1051
PleI	GAGTC	1 cut(s)	785
PpsI	GAGTC	1 cut(s)	785
PshBI	ATTAAT	1 cut(s)	306
PspN4I	GGNNCC	3 cut(s)	180, 668, 912
PspPI	GGNCC	3 cut(s)	15, 137, 473
PstI	CTGCAG	1 cut(s)	964
PsuI	RGATCY	3 cut(s)	178, 394, 666
RruI	TCGCGA	1 cut(s)	828
RseI	CAYNNNNRTG	1 cut(s)	81
SaqAI	TTAA	3 cut(s)	306, 533, 890
SatI	GCNGC	4 cut(s)	74, 87, 819, 1050
Sau3AI	GATC	4 cut(s)	178, 394, 666, 676
Sau96I	GGNCC	3 cut(s)	15, 137, 473
SchI	GAGTC	1 cut(s)	786
SduI	GDGCHC	2 cut(s)	657, 934
SfaNI	GCATC	2 cut(s)	45, 51
SfcI	CTRYAG	1 cut(s)	960
SinI	GGWCC	1 cut(s)	473
SmiMI	CAYNNNNRTG	1 cut(s)	81
SmlI	CTYRAG	1 cut(s)	96
SmoI	CTYRAG	1 cut(s)	96
Sse9I	AATT	7 cut(s)	110, 163, 214, 536, 544, 1006, 1028
SspMI	CTAG	2 cut(s)	707, 809
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	2 cut(s)	553, 1018
TaiI	ACGT	1 cut(s)	749
TaqI	TCGA	1 cut(s)	171
TasI	AATT	7 cut(s)	110, 163, 214, 536, 544, 1006, 1028
TfiI	GAWTC	2 cut(s)	497, 965
Tru1I	TTAA	3 cut(s)	306, 533, 890
Tru9I	TTAA	3 cut(s)	306, 533, 890
TscAI	CASTG	1 cut(s)	111
TseFI	GTSAC	4 cut(s)	559, 753, 988, 1012
TseI	GCWGC	4 cut(s)	73, 86, 818, 1049
Tsp45I	GTSAC	4 cut(s)	559, 753, 988, 1012
TspDTI	ATGAA	3 cut(s)	705, 823, 907
TspRI	CASTG	1 cut(s)	111
VpaK11BI	GGWCC	1 cut(s)	473
VspI	ATTAAT	1 cut(s)	306
XagI	CCTNNNNNAGG	1 cut(s)	144
XapI	RAATTY	2 cut(s)	536, 1028
XspI	CTAG	2 cut(s)	707, 809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.