Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000829

Physical Location & Seq

Genomic Coordinates Reverse (-)

26348602 .. 26350339

Gene Structure 1738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g35761.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGAACCCTCTTCTTGAGTCTTCAAACTTCACCTCTACTAACTTGACTATAGACTTTTCTGGAAGGAGATTCCGGTTTGGAATGATTGCTGAAAAGAAAGTCTTGTTAGTGATGACAGGAATGGGAATGATTAATGCAGGTATAACAACTCAGCTTTTGTTGAGCGTGTTCAATATAGAAGGAGTGGTACATTATGGGATAGCCGGTAATGCAAACCCAGACTTCAATATTGCAGATGTGGTCATTCCTCAGTTTTGGTCCCATTCTGGTCTTTGGAACTGGCAGAAATATGGAGACGGGCCTGAAGATGAACTACCCCTTGAATCAATAGGAGACTTCACCAGAGACATTGGATATTTGAGGTTTGCAAATTACACAGTGAATGTAACCGGTGGAAGCTCATATGACAACTTGTTAAACTATATCTGGTTTCAAGAAGAGGAAATTTTCCCCGTCAACGGAACTCCAGAAGAAAGAGAGCGTGCTTTCTGGGTCGAGGTTGATCCCACCTACTATGAAATCGCCAAAAAACTCGAGGGCCTAACACTTGAAAGCTGCATAAACTCAACGACGTGTTTGTCCGAAACACCAAAAGTGGCAAGAGTCCAAAGGGGAACTAGTGCAAGCATATACCTATACAATGCTGCTTACCGGAACTTCATATATGATAAATTCAACGTAACTCCGGTGGACATGGAAAGTGCTTCTATTGCCTTGATTTGTCTTCAACAGAATGTGCCTTTTATAACCATTAGGGCTCTCTCAGACTTGGCCGGCGGTGGCTCCTCCGTTACGGACGACGCTGATACTTTCTTCGATCTTGCCGCAAATAATTCGGTTATAGTTCTCTTGGAATTCATCAAAGAGTTATCAGCTTCTACTCTATCTAAGAGCACCATCCACGTATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNP_UDP_1

Protein Analysis

304

Amino Acids

33.71

Weight (kDa)

4.53

Isoelectric Point (pI)

31.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PNP_UDP_1	PF01048	17 - 288	4.2e-28	Phosphorylase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28940 AT4G28940
fragaria_vesca	FvH4_1g05530 FvH4_2g35741 FvH4_2g35750 FvH4_2g35760 FvH4_2g35761 FvH4_2g35762
malus_domestica	MD15G1095100.v1.1 MD15G1095200.v1.1 MD15G1095300.v1.1 MD15G1191300.v1.1
prunus_persica	Prupe.1G450100_v2.0.a1 Prupe.1G450200_v2.0.a1 Prupe.7G225900_v2.0.a1 Prupe.7G225900_v2.0.a1 Prupe.7G225900_v2.0.a1
pyrus_communis	pycom15g08760 pycom15g08770 pycom15g17130
rosa_chinensis	RchiOBHm_Chr1g0336711 RchiOBHm_Chr2g0091231 RchiOBHm_Chr6g0259261 RchiOBHm_Chr6g0259271 RchiOBHm_Chr6g0306011 RchiOBHm_Chr6g0306021
rosa_laevigata	RLG00000010830 RLG00000010831 RLG00000010832 RLG00000014544 RLG00000016193 RLG00000029340
rosa_multiflora	Rmu_sc0002270.1_g000016 Rmu_sc0011974.1_g000004 Rmu_sc0020534.1_g000001 Rmu_sc0035114.1_g000001 Rmu_sc0036553.1_g000001 Rmu_ssc0000050.1_g000090
rosa_roxburghii	Rroxscaffold_2G00150370 Rroxscaffold_7G00162110 Rroxscaffold_7G00162130
rosa_rugosa	Rorug02G0014600 Rorug06G0346400 Rorug06G0346600
rosa_samantha	Rh2AG060400 Rh2BG059100 Rh2CG060900 Rh2DG059700 Rh6AG103200 Rh6AG458200 Rh6AG458400 Rh6BG095600 Rh6BG442400 Rh6BG442500 Rh6BG442600 Rh6BG442700 Rh6CG092500 Rh6CG472700 Rh6CG472800 Rh6CG472900 Rh6DG086500 Rh6DG458800 Rh6DG459000 Rh6DG459100
rosa_wichuraiana	Rw2G004950 Rw6G008910 Rw6G039960 Rw6G039970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	746
AasI	GACNNNNNNGTC	1 cut(s)	577
Acc36I	ACCTGC	1 cut(s)	128
AciI	CCGC	2 cut(s)	777, 825
AclWI	GGATC	1 cut(s)	497
AcoI	YGGCCR	1 cut(s)	771
AcsI	RAATTY	3 cut(s)	444, 671, 854
AcuI	CTGAAG	1 cut(s)	324
AfaI	GTAC	1 cut(s)	189
AfiI	CCNNNNNNNGG	1 cut(s)	458
AflIII	ACRYGT	1 cut(s)	572
AgeI	ACCGGT	1 cut(s)	389
AgsI	TTSAA	8 cut(s)	24, 172, 226, 323, 434, 551, 676, 728
AhlI	ACTAGT	1 cut(s)	617
AjiI	CACGTC	1 cut(s)	573
AluBI	AGCT	4 cut(s)	154, 399, 555, 875
AluI	AGCT	4 cut(s)	154, 399, 555, 875
Alw21I	GWGCWC	1 cut(s)	896
Alw26I	GTCTC	3 cut(s)	288, 327, 339
AlwI	GGATC	1 cut(s)	497
Ama87I	CYCGRG	1 cut(s)	533
AoxI	GGCC	3 cut(s)	299, 538, 771
ApeKI	GCWGC	2 cut(s)	555, 644
ApoI	RAATTY	3 cut(s)	444, 671, 854
AseI	ATTAAT	1 cut(s)	132
AsiGI	ACCGGT	1 cut(s)	389
AspS9I	GGNCC	3 cut(s)	258, 299, 538
AsuHPI	GGTGA	2 cut(s)	22, 331
AvaI	CYCGRG	1 cut(s)	533
AvaII	GGWCC	1 cut(s)	258
BanII	GRGCYC	1 cut(s)	760
BarI	GAAGNNNNNNTAC	4 cut(s)	171, 203, 297, 329
BbsI	GAAGAC	2 cut(s)	12, 716
Bbv12I	GWGCWC	1 cut(s)	896
BbvI	GCAGC	2 cut(s)	542, 631
BccI	CCATC	1 cut(s)	905
BcgI	CGANNNNNNTGC	2 cut(s)	816, 850
BcoDI	GTCTC	3 cut(s)	288, 327, 339
BcuI	ACTAGT	1 cut(s)	617
BfaI	CTAG	1 cut(s)	618
BfmI	CTRYAG	1 cut(s)	48
BfuAI	ACCTGC	1 cut(s)	128
BisI	GCNGC	3 cut(s)	556, 645, 825
BlsI	GCNGC	3 cut(s)	557, 646, 826
Bme18I	GGWCC	1 cut(s)	258
BmeT110I	CYCGRG	1 cut(s)	533
BmgBI	CACGTC	1 cut(s)	573
BmgT120I	GGNCC	3 cut(s)	258, 299, 538
BmiI	GGNNCC	2 cut(s)	260, 784
BpiI	GAAGAC	2 cut(s)	12, 716
BpmI	CTGGAG	1 cut(s)	450
BpuEI	CTTGAG	1 cut(s)	35
BsaAI	YACGTR	1 cut(s)	904
BsaWI	WCCGGW	4 cut(s)	72, 389, 651, 685
Bsc4I	CCNNNNNNNGG	1 cut(s)	458
Bse118I	RCCGGY	3 cut(s)	203, 389, 773
Bse1I	ACTGG	1 cut(s)	284
BseGI	GGATG	1 cut(s)	897
BseLI	CCNNNNNNNGG	1 cut(s)	458
BseMII	CTCAG	3 cut(s)	164, 263, 777
BseNI	ACTGG	1 cut(s)	284
BseRI	GAGGAG	1 cut(s)	775
BseXI	GCAGC	2 cut(s)	542, 631
BshFI	GGCC	3 cut(s)	301, 540, 773
BshTI	ACCGGT	1 cut(s)	389
BsiHKAI	GWGCWC	1 cut(s)	896
BsiHKCI	CYCGRG	1 cut(s)	533
BsiSI	CCGG	6 cut(s)	73, 204, 390, 652, 686, 774
BslFI	GGGAC	1 cut(s)	244
BslI	CCNNNNNNNGG	1 cut(s)	458
BsmAI	GTCTC	3 cut(s)	288, 327, 339
BsmBI	CGTCTC	1 cut(s)	288
BsmFI	GGGAC	1 cut(s)	244
BsnI	GGCC	3 cut(s)	301, 540, 773
BsoBI	CYCGRG	1 cut(s)	533
Bsp1286I	GDGCHC	2 cut(s)	760, 896
Bsp143I	GATC	2 cut(s)	502, 817
BspACI	CCGC	2 cut(s)	777, 825
BspANI	GGCC	3 cut(s)	301, 540, 773
BspCNI	CTCAG	3 cut(s)	163, 262, 776
BspLI	GGNNCC	2 cut(s)	260, 784
BspMI	ACCTGC	1 cut(s)	128
BspPI	GGATC	1 cut(s)	497
BsrFI	RCCGGY	3 cut(s)	203, 389, 773
BsrI	ACTGG	1 cut(s)	284
BssAI	RCCGGY	3 cut(s)	203, 389, 773
BssMI	GATC	2 cut(s)	502, 817
Bst4CI	ACNGT	1 cut(s)	379
Bst6I	CTCTTC	2 cut(s)	15, 432
BstBAI	YACGTR	1 cut(s)	904
BstC8I	GCNNGC	3 cut(s)	483, 625, 775
BstDEI	CTNAG	4 cut(s)	150, 249, 763, 888
BstF5I	GGATG	1 cut(s)	897
BstKTI	GATC	2 cut(s)	505, 820
BstMAI	GTCTC	3 cut(s)	288, 327, 339
BstMBI	GATC	2 cut(s)	502, 817
BstMWI	GCNNNNNNNGC	2 cut(s)	209, 710
BstSFI	CTRYAG	1 cut(s)	48
BstV1I	GCAGC	2 cut(s)	542, 631
BstV2I	GAAGAC	2 cut(s)	12, 716
BsuRI	GGCC	3 cut(s)	301, 540, 773
BtrI	CACGTC	1 cut(s)	573
BtsCI	GGATG	1 cut(s)	897
BtsIMutI	CAGTG	1 cut(s)	384
BveI	ACCTGC	1 cut(s)	128
Cac8I	GCNNGC	3 cut(s)	483, 625, 775
Cfr10I	RCCGGY	3 cut(s)	203, 389, 773
Cfr13I	GGNCC	3 cut(s)	258, 299, 538
CseI	GACGC	1 cut(s)	809
Csp6I	GTAC	1 cut(s)	188
CspAI	ACCGGT	1 cut(s)	389
CviAII	CATG	1 cut(s)	694
CviQI	GTAC	1 cut(s)	188
DdeI	CTNAG	4 cut(s)	150, 249, 763, 888
DpnI	GATC	2 cut(s)	504, 819
DpnII	GATC	2 cut(s)	502, 817
DrdI	GACNNNNNNGTC	1 cut(s)	577
DseDI	GACNNNNNNGTC	1 cut(s)	577
EaeI	YGGCCR	1 cut(s)	771
Eam1104I	CTCTTC	2 cut(s)	15, 432
EarI	CTCTTC	2 cut(s)	15, 432
Eco24I	GRGCYC	1 cut(s)	760
Eco47I	GGWCC	1 cut(s)	258
Eco57I	CTGAAG	1 cut(s)	324
Eco88I	CYCGRG	1 cut(s)	533
EcoO109I	RGGNCCY	1 cut(s)	538
EcoRI	GAATTC	1 cut(s)	854
EcoT38I	GRGCYC	1 cut(s)	760
Esp3I	CGTCTC	1 cut(s)	288
FaeI	CATG	1 cut(s)	697
FalI	AAGNNNNNCTT	2 cut(s)	86, 118
FaqI	GGGAC	1 cut(s)	244
FatI	CATG	1 cut(s)	693
FauNDI	CATATG	1 cut(s)	403
Fnu4HI	GCNGC	3 cut(s)	556, 645, 825
FokI	GGATG	1 cut(s)	884
FriOI	GRGCYC	1 cut(s)	760
Fsp4HI	GCNGC	3 cut(s)	556, 645, 825
FspBI	CTAG	1 cut(s)	618
GluI	GCNGC	3 cut(s)	556, 645, 825
GsuI	CTGGAG	1 cut(s)	450
HaeIII	GGCC	3 cut(s)	301, 540, 773
HapII	CCGG	6 cut(s)	73, 204, 390, 652, 686, 774
HgaI	GACGC	1 cut(s)	809
Hin1II	CATG	1 cut(s)	697
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HinfI	GANTC	4 cut(s)	17, 69, 323, 603
HpaII	CCGG	6 cut(s)	73, 204, 390, 652, 686, 774
HphI	GGTGA	2 cut(s)	22, 331
Hpy166II	GTNNAC	2 cut(s)	457, 691
Hpy188I	TCNGA	2 cut(s)	583, 766
Hpy188III	TCNNGA	4 cut(s)	14, 60, 434, 467
Hpy8I	GTNNAC	2 cut(s)	457, 691
Hpy99I	CGWCG	2 cut(s)	574, 803
HpyAV	CCTTC	2 cut(s)	57, 173
HpyCH4III	ACNGT	1 cut(s)	379
HpyCH4IV	ACGT	3 cut(s)	572, 678, 903
HpyCH4V	TGCA	6 cut(s)	137, 212, 233, 368, 558, 623
HpyF10VI	GCNNNNNNNGC	2 cut(s)	209, 710
HpyF3I	CTNAG	4 cut(s)	150, 249, 763, 888
HpySE526I	ACGT	3 cut(s)	572, 678, 903
Hsp92II	CATG	1 cut(s)	697
KroI	GCCGGC	1 cut(s)	773
KroNI	GCCGGC	1 cut(s)	775
Kzo9I	GATC	2 cut(s)	502, 817
LmnI	GCTCC	1 cut(s)	788
Lsp1109I	GCAGC	2 cut(s)	542, 631
MaeI	CTAG	1 cut(s)	618
MaeII	ACGT	3 cut(s)	572, 678, 903
MaeIII	GTNAC	3 cut(s)	385, 679, 790
MalI	GATC	2 cut(s)	504, 819
MboI	GATC	2 cut(s)	502, 817
MboII	GAAGA	6 cut(s)	12, 317, 449, 482, 716, 805
MhlI	GDGCHC	2 cut(s)	760, 896
MluCI	AATT	5 cut(s)	370, 444, 671, 832, 854
MlyI	GAGTC	2 cut(s)	26, 612
MnlI	CCTC	8 cut(s)	18, 43, 258, 354, 433, 490, 529, 796
MroNI	GCCGGC	1 cut(s)	773
MseI	TTAA	2 cut(s)	132, 416
MspI	CCGG	6 cut(s)	73, 204, 390, 652, 686, 774
MwoI	GCNNNNNNNGC	2 cut(s)	209, 710
NaeI	GCCGGC	1 cut(s)	775
NdeI	CATATG	1 cut(s)	403
NdeII	GATC	2 cut(s)	502, 817
NgoMIV	GCCGGC	1 cut(s)	773
NlaIII	CATG	1 cut(s)	697
NlaIV	GGNNCC	2 cut(s)	260, 784
PaeR7I	CTCGAG	1 cut(s)	533
PdiI	GCCGGC	1 cut(s)	775
PfeI	GAWTC	2 cut(s)	69, 323
PinAI	ACCGGT	1 cut(s)	389
PkrI	GCNGC	3 cut(s)	557, 646, 826
PleI	GAGTC	2 cut(s)	25, 611
PpsI	GAGTC	2 cut(s)	25, 611
Ppu21I	YACGTR	1 cut(s)	904
PshBI	ATTAAT	1 cut(s)	132
PsiI	TTATAA	1 cut(s)	746
PspN4I	GGNNCC	2 cut(s)	260, 784
PspPI	GGNCC	3 cut(s)	258, 299, 538
PspXI	VCTCGAGB	1 cut(s)	533
RsaI	GTAC	1 cut(s)	189
RsaNI	GTAC	1 cut(s)	188
SaqAI	TTAA	2 cut(s)	132, 416
SatI	GCNGC	3 cut(s)	556, 645, 825
Sau3AI	GATC	2 cut(s)	502, 817
Sau96I	GGNCC	3 cut(s)	258, 299, 538
SchI	GAGTC	2 cut(s)	26, 612
SduI	GDGCHC	2 cut(s)	760, 896
SfcI	CTRYAG	1 cut(s)	48
Sfr274I	CTCGAG	1 cut(s)	533
SinI	GGWCC	1 cut(s)	258
SlaI	CTCGAG	1 cut(s)	533
SmlI	CTYRAG	2 cut(s)	14, 533
SmoI	CTYRAG	2 cut(s)	14, 533
SpeI	ACTAGT	1 cut(s)	617
Sse9I	AATT	5 cut(s)	370, 444, 671, 832, 854
SsiI	CCGC	2 cut(s)	777, 825
SspI	AATATT	1 cut(s)	229
SspMI	CTAG	1 cut(s)	618
TaaI	ACNGT	1 cut(s)	379
TaiI	ACGT	3 cut(s)	575, 681, 906
TaqI	TCGA	3 cut(s)	495, 534, 816
TasI	AATT	5 cut(s)	370, 444, 671, 832, 854
TauI	GCSGC	1 cut(s)	827
TfiI	GAWTC	2 cut(s)	69, 323
Tru1I	TTAA	2 cut(s)	132, 416
Tru9I	TTAA	2 cut(s)	132, 416
TscAI	CASTG	1 cut(s)	384
TseI	GCWGC	2 cut(s)	555, 644
TspDTI	ATGAA	5 cut(s)	17, 324, 531, 649, 847
TspGWI	ACGGA	3 cut(s)	474, 778, 809
TspRI	CASTG	1 cut(s)	384
VpaK11BI	GGWCC	1 cut(s)	258
VspI	ATTAAT	1 cut(s)	132
XapI	RAATTY	3 cut(s)	444, 671, 854
XhoI	CTCGAG	1 cut(s)	533
XspI	CTAG	1 cut(s)	618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.