Rw6G039970
ERF Family

Phosphorylase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000829
Physical Location & Seq
Forward (+)
63822730 .. 63824993
2264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G039970.1

Sequence Viewer

Length: 1080 bp
ATGGGAAGTTCAGCAGCGGTATGTTGGACTCTTCTTTATGCTATCTTGGCTCTTATCTCAACCCAACAACACTACTCAAATGCTGCCTTGTTGCCGGAGACACTCAAGTTAATCGAAGCGGCAAACGGCGATGGACCTTATTTAGGGTTGGTCATTCCAAACACTTACGAATTGAACCCTCTTCTTCGATCTCCAAACTTCACATCAACTGACTTGATCATTGACTTTTCTGGAAGAAGATTCAGGTTTGGAACCATTGCTACAAAGAAAGTCATATTAGTTATGACAGGACTGGGAATGATTAATGCAGGAATAACCACTCAGCTTTTACTAAGCATGTTCAGTGTAGAAGGAGTGGTGCATTATGGCACAGCTGGCAATGCGAATCCAACCTTCAACCTTGCAGATGTGGTCATTCCTCAGTATTGGTCCCATACTGCTCTTTGGACCTGGCAAAGATATGGACATGGGCCTGAAGATGATTTGCCTCTAAATTCAATGAGAGATATTGGGTGCTTGAACCTTGCAAGTTACACAGTGAATGTGACAGATGGGAGCTCATATGATAACTTGTTGAACAATATTTGGTATCAGTCAGAGGAAGTCTTCCCCATTGATGGAACTCCAGAACAAAGAGAGTTTACCTTTTGGGTCCCTGTTCATCCCTTCTACTATGAAATCTCCAAAAATCTGGAGGATCTGAAACTAGAAGGTTGCCTAAACTCAACATCATGTTTGTCACATACACCAAAAGTGGCAAGAGTCCAGAGGGGAACAAGTGCAAGCATTTACCTAGACAATGCTGCTTACCGTGACTTCATATATGATAAGTTCAACATAACTCCGGTGGACATGGAAAGTGCTTCTGTTGCTTTGATATGCCTTCAGCAAAGGGTGCCCTTCATAGCCATCAGGGCTCTCTCTGACTTGGCCGGCGGTGGCTCTGCAGATTCCAATGAGGCTGACACATTCAATACTCTCGCTTCCCATAATTCAGCCACAGTTGTTGTTGAATTTATCAAACAGTTAGCAGCTGCTAGTTGTGCATCTATTATGTGTCCTAGTGATGATGTTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNP_UDP_1

Protein Analysis

359

Amino Acids

39.42

Weight (kDa)

4.75

Isoelectric Point (pI)

37.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNP_UDP_1 PF01048 49 - 341 4e-30 Phosphorylase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 895
AciI CCGC 3 cut(s) 17, 119, 936
AclWI GGATC 1 cut(s) 705
AcoI YGGCCR 1 cut(s) 930
AcsI RAATTY 2 cut(s) 493, 1013
AcuI CTGAAG 2 cut(s) 495, 869
AfiI CCNNNNNNNGG 2 cut(s) 143, 617
AgsI TTSAA 8 cut(s) 175, 397, 498, 520, 577, 835, 973, 1013
AjnI CCWGG 1 cut(s) 449
AluBI AGCT 4 cut(s) 325, 374, 558, 1034
AluI AGCT 4 cut(s) 325, 374, 558, 1034
Alw21I GWGCWC 1 cut(s) 560
Alw26I GTCTC 1 cut(s) 92
AlwI GGATC 1 cut(s) 705
AoxI GGCC 2 cut(s) 470, 930
ApeKI GCWGC 5 cut(s) 14, 83, 803, 1031, 1034
ApoI RAATTY 2 cut(s) 493, 1013
AseI ATTAAT 1 cut(s) 303
AspS9I GGNCC 5 cut(s) 134, 429, 447, 470, 652
AvaII GGWCC 4 cut(s) 134, 429, 447, 652
BaeGI GKGCMC 1 cut(s) 900
BanI GGYRCC 1 cut(s) 895
BanII GRGCYC 2 cut(s) 560, 919
BbsI GAAGAC 1 cut(s) 598
Bbv12I GWGCWC 1 cut(s) 560
BbvI GCAGC 5 cut(s) 26, 70, 790, 1021, 1043
BccI CCATC 4 cut(s) 125, 545, 611, 917
BceAI ACGGC 1 cut(s) 142
BciT130I CCWGG 1 cut(s) 451
BclI TGATCA 1 cut(s) 216
BcoDI GTCTC 1 cut(s) 92
BfaI CTAG 4 cut(s) 707, 794, 1038, 1062
BfmI CTRYAG 1 cut(s) 945
BglI GCCNNNNNGGC 1 cut(s) 914
BisI GCNGC 6 cut(s) 15, 84, 120, 804, 1032, 1035
BlsI GCNGC 6 cut(s) 16, 85, 121, 805, 1033, 1036
Bme1390I CCNGG 1 cut(s) 451
Bme18I GGWCC 4 cut(s) 134, 429, 447, 652
BmgT120I GGNCC 5 cut(s) 134, 429, 447, 470, 652
BmiI GGNNCC 5 cut(s) 253, 431, 653, 654, 897
BmrFI CCNGG 1 cut(s) 451
BmrI ACTGGG 1 cut(s) 302
BmsI GCATC 1 cut(s) 1055
BmuI ACTGGG 1 cut(s) 302
BpiI GAAGAC 1 cut(s) 598
BpmI CTGGAG 2 cut(s) 609, 713
BpuEI CTTGAG 1 cut(s) 89
BsaWI WCCGGW 1 cut(s) 844
Bsc4I CCNNNNNNNGG 2 cut(s) 143, 617
Bse118I RCCGGY 1 cut(s) 932
Bse1I ACTGG 1 cut(s) 297
Bse3DI GCAATG 2 cut(s) 255, 385
BseBI CCWGG 1 cut(s) 451
BseGI GGATG 1 cut(s) 661
BseLI CCNNNNNNNGG 2 cut(s) 143, 617
BseMI GCAATG 2 cut(s) 255, 385
BseMII CTCAG 2 cut(s) 335, 434
BseNI ACTGG 1 cut(s) 297
BseSI GKGCMC 1 cut(s) 900
BseXI GCAGC 5 cut(s) 26, 70, 790, 1021, 1043
BshFI GGCC 2 cut(s) 472, 932
BshNI GGYRCC 1 cut(s) 895
BsiHKAI GWGCWC 1 cut(s) 560
BsiSI CCGG 3 cut(s) 95, 845, 933
BslFI GGGAC 2 cut(s) 415, 638
BslI CCNNNNNNNGG 2 cut(s) 143, 617
BsmAI GTCTC 1 cut(s) 92
BsmFI GGGAC 2 cut(s) 415, 638
BsnI GGCC 2 cut(s) 472, 932
Bsp1286I GDGCHC 3 cut(s) 560, 900, 919
Bsp143I GATC 3 cut(s) 188, 216, 697
BspACI CCGC 3 cut(s) 17, 119, 936
BspANI GGCC 2 cut(s) 472, 932
BspCNI CTCAG 2 cut(s) 334, 433
BspLI GGNNCC 5 cut(s) 253, 431, 653, 654, 897
BspMAI CTGCAG 1 cut(s) 949
BspPI GGATC 1 cut(s) 705
BspT107I GGYRCC 1 cut(s) 895
BsrDI GCAATG 2 cut(s) 255, 385
BsrFI RCCGGY 1 cut(s) 932
BsrI ACTGG 1 cut(s) 297
BssAI RCCGGY 1 cut(s) 932
BssMI GATC 3 cut(s) 188, 216, 697
Bst2UI CCWGG 1 cut(s) 451
Bst4CI ACNGT 4 cut(s) 538, 812, 1003, 1026
Bst6I CTCTTC 2 cut(s) 36, 186
BstAPI GCANNNNNTGC 1 cut(s) 895
BstC8I GCNNGC 3 cut(s) 376, 784, 934
BstDEI CTNAG 3 cut(s) 321, 332, 420
BstENI CCTNNNNNAGG 1 cut(s) 141
BstF5I GGATG 1 cut(s) 661
BstKTI GATC 3 cut(s) 191, 219, 700
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 3 cut(s) 188, 216, 697
BstMWI GCNNNNNNNGC 7 cut(s) 47, 375, 380, 869, 895, 914, 1043
BstNI CCWGG 1 cut(s) 451
BstNSI RCATGY 1 cut(s) 340
BstSCI CCNGG 1 cut(s) 449
BstSFI CTRYAG 1 cut(s) 945
BstSLI GKGCMC 1 cut(s) 900
BstV1I GCAGC 5 cut(s) 26, 70, 790, 1021, 1043
BstV2I GAAGAC 1 cut(s) 598
BstX2I RGATCY 1 cut(s) 697
BstXI CCANNNNNNTGG 1 cut(s) 691
BstYI RGATCY 1 cut(s) 697
BsuRI GGCC 2 cut(s) 472, 932
BtgZI GCGATG 1 cut(s) 144
BtsCI GGATG 1 cut(s) 661
BtsIMutI CAGTG 2 cut(s) 349, 543
Cac8I GCNNGC 3 cut(s) 376, 784, 934
Cfr10I RCCGGY 1 cut(s) 932
Cfr13I GGNCC 5 cut(s) 134, 429, 447, 470, 652
CspCI CAANNNNNGTGG 2 cut(s) 988, 1023
CviAII CATG 4 cut(s) 337, 467, 732, 853
DdeI CTNAG 3 cut(s) 321, 332, 420
DpnI GATC 3 cut(s) 190, 218, 699
DpnII GATC 3 cut(s) 188, 216, 697
EaeI YGGCCR 1 cut(s) 930
Eam1104I CTCTTC 2 cut(s) 36, 186
EarI CTCTTC 2 cut(s) 36, 186
Ecl136II GAGCTC 1 cut(s) 558
Eco24I GRGCYC 2 cut(s) 560, 919
Eco47I GGWCC 4 cut(s) 134, 429, 447, 652
Eco53kI GAGCTC 1 cut(s) 558
Eco57I CTGAAG 2 cut(s) 495, 869
EcoICRI GAGCTC 1 cut(s) 558
EcoNI CCTNNNNNAGG 1 cut(s) 141
EcoO109I RGGNCCY 1 cut(s) 652
EcoRII CCWGG 1 cut(s) 449
EcoT38I GRGCYC 2 cut(s) 560, 919
FaeI CATG 4 cut(s) 340, 470, 735, 856
FaqI GGGAC 2 cut(s) 415, 638
FatI CATG 4 cut(s) 336, 466, 731, 852
FauNDI CATATG 1 cut(s) 562
FbaI TGATCA 1 cut(s) 216
Fnu4HI GCNGC 6 cut(s) 15, 84, 120, 804, 1032, 1035
FokI GGATG 1 cut(s) 648
FriOI GRGCYC 2 cut(s) 560, 919
Fsp4HI GCNGC 6 cut(s) 15, 84, 120, 804, 1032, 1035
FspBI CTAG 4 cut(s) 707, 794, 1038, 1062
GluI GCNGC 6 cut(s) 15, 84, 120, 804, 1032, 1035
GsuI CTGGAG 2 cut(s) 609, 713
HaeIII GGCC 2 cut(s) 472, 932
HapII CCGG 3 cut(s) 95, 845, 933
Hin1II CATG 4 cut(s) 340, 470, 735, 856
HinfI GANTC 5 cut(s) 28, 240, 385, 762, 950
HpaII CCGG 3 cut(s) 95, 845, 933
Hpy166II GTNNAC 3 cut(s) 642, 850, 1075
Hpy188I TCNGA 3 cut(s) 598, 702, 925
Hpy188III TCNNGA 4 cut(s) 231, 626, 692, 766
Hpy8I GTNNAC 3 cut(s) 642, 850, 1075
HpyAV CCTTC 6 cut(s) 344, 403, 676, 704, 893, 910
HpyCH4III ACNGT 4 cut(s) 538, 812, 1003, 1026
HpyCH4V TGCA 7 cut(s) 308, 361, 404, 527, 782, 947, 1046
HpyF10VI GCNNNNNNNGC 7 cut(s) 47, 375, 380, 869, 895, 914, 1043
HpyF3I CTNAG 3 cut(s) 321, 332, 420
Hsp92II CATG 4 cut(s) 340, 470, 735, 856
KflI GGGWCCC 1 cut(s) 652
KroI GCCGGC 1 cut(s) 932
KroNI GCCGGC 1 cut(s) 934
Ksp22I TGATCA 1 cut(s) 216
Kzo9I GATC 3 cut(s) 188, 216, 697
LmnI GCTCC 1 cut(s) 555
Lsp1109I GCAGC 5 cut(s) 26, 70, 790, 1021, 1043
LweI GCATC 1 cut(s) 1055
MaeI CTAG 4 cut(s) 707, 794, 1038, 1062
MaeIII GTNAC 4 cut(s) 530, 544, 738, 812
MalI GATC 3 cut(s) 190, 218, 699
MboI GATC 3 cut(s) 188, 216, 697
MboII GAAGA 7 cut(s) 23, 173, 176, 246, 249, 488, 598
MflI RGATCY 1 cut(s) 697
MhlI GDGCHC 3 cut(s) 560, 900, 919
MluCI AATT 4 cut(s) 170, 493, 991, 1013
MlyI GAGTC 2 cut(s) 22, 771
MmeI TCCRAC 2 cut(s) 5, 413
MnlI CCTC 7 cut(s) 189, 429, 498, 592, 688, 762, 952
MroNI GCCGGC 1 cut(s) 932
MseI TTAA 2 cut(s) 110, 303
MspA1I CMGCKG 3 cut(s) 17, 374, 1034
MspI CCGG 3 cut(s) 95, 845, 933
MspR9I CCNGG 1 cut(s) 451
MvaI CCWGG 1 cut(s) 451
MwoI GCNNNNNNNGC 7 cut(s) 47, 375, 380, 869, 895, 914, 1043
NaeI GCCGGC 1 cut(s) 934
NdeI CATATG 1 cut(s) 562
NdeII GATC 3 cut(s) 188, 216, 697
NgoMIV GCCGGC 1 cut(s) 932
NlaIII CATG 4 cut(s) 340, 470, 735, 856
NlaIV GGNNCC 5 cut(s) 253, 431, 653, 654, 897
NmuCI GTSAC 3 cut(s) 544, 738, 812
NspI RCATGY 1 cut(s) 340
PdiI GCCGGC 1 cut(s) 934
PfeI GAWTC 3 cut(s) 240, 385, 950
PkrI GCNGC 6 cut(s) 16, 85, 121, 805, 1033, 1036
PleI GAGTC 2 cut(s) 22, 770
PpsI GAGTC 2 cut(s) 22, 770
PpuMI RGGWCCY 1 cut(s) 652
PshBI ATTAAT 1 cut(s) 303
Psp124BI GAGCTC 1 cut(s) 560
Psp5II RGGWCCY 1 cut(s) 652
Psp6I CCWGG 1 cut(s) 449
PspGI CCWGG 1 cut(s) 449
PspN4I GGNNCC 5 cut(s) 253, 431, 653, 654, 897
PspPI GGNCC 5 cut(s) 134, 429, 447, 470, 652
PspPPI RGGWCCY 1 cut(s) 652
PsrI GAACNNNNNNTAC 2 cut(s) 244, 276
PstI CTGCAG 1 cut(s) 949
PsuI RGATCY 1 cut(s) 697
PvuII CAGCTG 2 cut(s) 374, 1034
SacI GAGCTC 1 cut(s) 560
SaqAI TTAA 2 cut(s) 110, 303
SatI GCNGC 6 cut(s) 15, 84, 120, 804, 1032, 1035
Sau3AI GATC 3 cut(s) 188, 216, 697
Sau96I GGNCC 5 cut(s) 134, 429, 447, 470, 652
SchI GAGTC 2 cut(s) 22, 771
ScrFI CCNGG 1 cut(s) 451
SduI GDGCHC 3 cut(s) 560, 900, 919
SfaNI GCATC 1 cut(s) 1055
SfcI CTRYAG 1 cut(s) 945
SinI GGWCC 4 cut(s) 134, 429, 447, 652
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse9I AATT 4 cut(s) 170, 493, 991, 1013
SsiI CCGC 3 cut(s) 17, 119, 936
SspI AATATT 1 cut(s) 583
SspMI CTAG 4 cut(s) 707, 794, 1038, 1062
SstI GAGCTC 1 cut(s) 560
StyD4I CCNGG 1 cut(s) 449
TaaI ACNGT 4 cut(s) 538, 812, 1003, 1026
TaqI TCGA 2 cut(s) 114, 187
TasI AATT 4 cut(s) 170, 493, 991, 1013
TauI GCSGC 1 cut(s) 122
TfiI GAWTC 3 cut(s) 240, 385, 950
Tru1I TTAA 2 cut(s) 110, 303
Tru9I TTAA 2 cut(s) 110, 303
TscAI CASTG 2 cut(s) 349, 543
TseFI GTSAC 3 cut(s) 544, 738, 812
TseI GCWGC 5 cut(s) 14, 83, 803, 1031, 1034
Tsp45I GTSAC 3 cut(s) 544, 738, 812
TspDTI ATGAA 4 cut(s) 650, 690, 808, 892
TspRI CASTG 2 cut(s) 349, 543
VpaK11BI GGWCC 4 cut(s) 134, 429, 447, 652
VspI ATTAAT 1 cut(s) 303
XagI CCTNNNNNAGG 1 cut(s) 141
XapI RAATTY 2 cut(s) 493, 1013
XceI RCATGY 1 cut(s) 340
XspI CTAG 4 cut(s) 707, 794, 1038, 1062
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.