Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011974.1

Orthogroup ID

OG0000829

Physical Location & Seq

Genomic Coordinates Reverse (-)

8768 .. 9735

Gene Structure 968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011974.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

atggagagccatttgaagatggtgttagtggttttctttgtattggttttggagattagcactagaacagttgatggtgcagtttctcaaagtaccatgaaaaagattgataggatgaataggaaaggcccatacttgggtattatagtaccaaattcctttgagctcacccctcttcttcaatctgcaagctttgtggctgatcagaagcttcccagtttggatttttcaggaagaaggtttcgattcggtagattggataatcaaagtgttgtaattgctatgacagggttgagcatgcttaatgcaggagtaacaactcaattattgcttaccctattcaaggtgaaaggggttgtgcactatggaattgctggaaatgcagatcctcaactccaaattggagatgtcactatccctcagtattgggctcatacaagactttggaattggcagaggtttggggatggtccggatgatttgttatctttggagtcattcgttcggcagcactccttttgggtccctgtaaacaaaaaatattttgctcttgctcaacaactacaggatttgaagttagagggttgtgtgaatacaacttgtttaccaagaacaccaatagtggtgagagggcaacgggggatgagtgccaatgtgtttgttgacaatagtgcatatagacaattcttgaactccaagtttaatgccactgcaattgacatggaaagtgctgcagtagctctggtctgtaagcagcagaagacacccttcattgtgattagggcgctatcagatttggccggggggaggttcctctgtgtcgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNP_UDP_1

Protein Analysis

275

Amino Acids

30.69

Weight (kDa)

9.46

Isoelectric Point (pI)

27.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28940 AT4G28940
fragaria_vesca	FvH4_1g05530 FvH4_2g35741 FvH4_2g35750 FvH4_2g35760 FvH4_2g35761 FvH4_2g35762
malus_domestica	MD15G1095100.v1.1 MD15G1095200.v1.1 MD15G1095300.v1.1 MD15G1191300.v1.1
prunus_persica	Prupe.1G450100_v2.0.a1 Prupe.1G450200_v2.0.a1 Prupe.7G225900_v2.0.a1 Prupe.7G225900_v2.0.a1 Prupe.7G225900_v2.0.a1
pyrus_communis	pycom15g08760 pycom15g08770 pycom15g17130
rosa_chinensis	RchiOBHm_Chr1g0336711 RchiOBHm_Chr2g0091231 RchiOBHm_Chr6g0259261 RchiOBHm_Chr6g0259271 RchiOBHm_Chr6g0306011 RchiOBHm_Chr6g0306021
rosa_laevigata	RLG00000010830 RLG00000010831 RLG00000010832 RLG00000014544 RLG00000016193 RLG00000029340
rosa_multiflora	Rmu_sc0002270.1_g000016 Rmu_sc0011974.1_g000004 Rmu_sc0020534.1_g000001 Rmu_sc0035114.1_g000001 Rmu_sc0036553.1_g000001 Rmu_ssc0000050.1_g000090
rosa_roxburghii	Rroxscaffold_2G00150370 Rroxscaffold_7G00162110 Rroxscaffold_7G00162130
rosa_rugosa	Rorug02G0014600 Rorug06G0346400 Rorug06G0346600
rosa_samantha	Rh2AG060400 Rh2BG059100 Rh2CG060900 Rh2DG059700 Rh6AG103200 Rh6AG458200 Rh6AG458400 Rh6BG095600 Rh6BG442400 Rh6BG442500 Rh6BG442600 Rh6BG442700 Rh6CG092500 Rh6CG472700 Rh6CG472800 Rh6CG472900 Rh6DG086500 Rh6DG458800 Rh6DG459000 Rh6DG459100
rosa_wichuraiana	Rw2G004950 Rw6G008910 Rw6G039960 Rw6G039970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	472
AclWI	GGATC	1 cut(s)	380
AcoI	YGGCCR	1 cut(s)	798
AcsI	RAATTY	1 cut(s)	154
AfaI	GTAC	2 cut(s)	94, 150
AfiI	CCNNNNNNNGG	4 cut(s)	136, 137, 343, 807
AgsI	TTSAA	5 cut(s)	16, 182, 343, 574, 691
AluBI	AGCT	4 cut(s)	166, 192, 211, 740
AluI	AGCT	4 cut(s)	166, 192, 211, 740
Alw21I	GWGCWC	2 cut(s)	168, 363
Alw44I	GTGCAC	1 cut(s)	359
AlwI	GGATC	1 cut(s)	380
Aor13HI	TCCGGA	1 cut(s)	472
AoxI	GGCC	2 cut(s)	127, 798
ApaLI	GTGCAC	1 cut(s)	359
ApeKI	GCWGC	3 cut(s)	508, 731, 754
ApoI	RAATTY	1 cut(s)	154
AspLEI	GCGC	1 cut(s)	787
AspS9I	GGNCC	3 cut(s)	128, 470, 523
AsuC2I	CCSGG	1 cut(s)	802
AsuHPI	GGTGA	3 cut(s)	160, 358, 637
AvaII	GGWCC	2 cut(s)	470, 523
BaeGI	GKGCMC	1 cut(s)	363
BanII	GRGCYC	2 cut(s)	168, 433
BbsI	GAAGAC	1 cut(s)	767
Bbv12I	GWGCWC	2 cut(s)	168, 363
BbvI	GCAGC	3 cut(s)	520, 718, 766
BccI	CCATC	3 cut(s)	13, 68, 461
BclI	TGATCA	1 cut(s)	202
BcnI	CCSGG	1 cut(s)	802
BfaI	CTAG	1 cut(s)	63
BfmI	CTRYAG	2 cut(s)	563, 732
BfoI	RGCGCY	1 cut(s)	788
BisI	GCNGC	3 cut(s)	509, 732, 755
BlsI	GCNGC	3 cut(s)	510, 733, 756
Bme1390I	CCNGG	1 cut(s)	802
Bme18I	GGWCC	2 cut(s)	470, 523
BmgT120I	GGNCC	3 cut(s)	128, 470, 523
BmiI	GGNNCC	3 cut(s)	524, 525, 812
BmrFI	CCNGG	1 cut(s)	802
BmrI	ACTGGG	1 cut(s)	210
BmuI	ACTGGG	1 cut(s)	210
BpiI	GAAGAC	1 cut(s)	767
BpuMI	CCSGG	1 cut(s)	802
BsaJI	CCNNGG	1 cut(s)	801
BsaWI	WCCGGW	1 cut(s)	472
Bsc4I	CCNNNNNNNGG	4 cut(s)	136, 137, 343, 807
Bse1I	ACTGG	1 cut(s)	216
BseAI	TCCGGA	1 cut(s)	472
BseDI	CCNNGG	1 cut(s)	801
BseGI	GGATG	4 cut(s)	120, 472, 481, 648
BseLI	CCNNNNNNNGG	4 cut(s)	136, 137, 343, 807
BseMII	CTCAG	1 cut(s)	434
BseNI	ACTGG	1 cut(s)	216
BseSI	GKGCMC	1 cut(s)	363
BseXI	GCAGC	3 cut(s)	520, 718, 766
BsgI	GTGCAG	1 cut(s)	99
BshFI	GGCC	2 cut(s)	129, 800
BsiHKAI	GWGCWC	2 cut(s)	168, 363
BsiSI	CCGG	2 cut(s)	473, 801
BslFI	GGGAC	1 cut(s)	509
BslI	CCNNNNNNNGG	4 cut(s)	136, 137, 343, 807
BsmFI	GGGAC	1 cut(s)	509
BsnI	GGCC	2 cut(s)	129, 800
Bsp1286I	GDGCHC	3 cut(s)	168, 363, 433
Bsp13I	TCCGGA	1 cut(s)	472
Bsp143I	GATC	2 cut(s)	202, 385
BspANI	GGCC	2 cut(s)	129, 800
BspCNI	CTCAG	1 cut(s)	433
BspEI	TCCGGA	1 cut(s)	472
BspLI	GGNNCC	3 cut(s)	524, 525, 812
BspMAI	CTGCAG	1 cut(s)	736
BspPI	GGATC	1 cut(s)	380
BsrI	ACTGG	1 cut(s)	216
BssECI	CCNNGG	1 cut(s)	801
BssMI	GATC	2 cut(s)	202, 385
Bst4CI	ACNGT	1 cut(s)	70
Bst6I	CTCTTC	1 cut(s)	180
BstC8I	GCNNGC	2 cut(s)	190, 299
BstDEI	CTNAG	1 cut(s)	420
BstENI	CCTNNNNNAGG	1 cut(s)	341
BstF5I	GGATG	4 cut(s)	120, 472, 481, 648
BstH2I	RGCGCY	1 cut(s)	788
BstHHI	GCGC	1 cut(s)	787
BstKTI	GATC	2 cut(s)	205, 388
BstMBI	GATC	2 cut(s)	202, 385
BstMWI	GCNNNNNNNGC	2 cut(s)	380, 737
BstNSI	RCATGY	1 cut(s)	301
BstSCI	CCNGG	1 cut(s)	800
BstSFI	CTRYAG	2 cut(s)	563, 732
BstSLI	GKGCMC	1 cut(s)	363
BstV1I	GCAGC	3 cut(s)	520, 718, 766
BstV2I	GAAGAC	1 cut(s)	767
BstX2I	RGATCY	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	385
BsuRI	GGCC	2 cut(s)	129, 800
BtsCI	GGATG	4 cut(s)	120, 472, 481, 648
BtsI	GCAGTG	1 cut(s)	708
BtsIMutI	CAGTG	1 cut(s)	708
Cac8I	GCNNGC	2 cut(s)	190, 299
CfoI	GCGC	1 cut(s)	787
Cfr13I	GGNCC	3 cut(s)	128, 470, 523
Csp6I	GTAC	2 cut(s)	93, 149
CspCI	CAANNNNNGTGG	4 cut(s)	177, 212, 697, 732
CviAII	CATG	3 cut(s)	97, 298, 721
CviJI	RGCY	9 cut(s)	9, 129, 166, 192, 200, 211, 431, 740, 800
CviKI_1	RGCY	9 cut(s)	9, 129, 166, 192, 200, 211, 431, 740, 800
CviQI	GTAC	2 cut(s)	93, 149
DdeI	CTNAG	1 cut(s)	420
DpnI	GATC	2 cut(s)	204, 387
DpnII	GATC	2 cut(s)	202, 385
EaeI	YGGCCR	1 cut(s)	798
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Ecl136II	GAGCTC	1 cut(s)	166
Eco24I	GRGCYC	2 cut(s)	168, 433
Eco47I	GGWCC	2 cut(s)	470, 523
Eco53kI	GAGCTC	1 cut(s)	166
EcoICRI	GAGCTC	1 cut(s)	166
EcoNI	CCTNNNNNAGG	1 cut(s)	341
EcoO109I	RGGNCCY	1 cut(s)	523
EcoT38I	GRGCYC	2 cut(s)	168, 433
FaeI	CATG	3 cut(s)	100, 301, 724
FalI	AAGNNNNNCTT	2 cut(s)	752, 784
FaqI	GGGAC	1 cut(s)	509
FatI	CATG	3 cut(s)	96, 297, 720
FbaI	TGATCA	1 cut(s)	202
Fnu4HI	GCNGC	3 cut(s)	509, 732, 755
FokI	GGATG	4 cut(s)	127, 479, 488, 655
FriOI	GRGCYC	2 cut(s)	168, 433
Fsp4HI	GCNGC	3 cut(s)	509, 732, 755
FspBI	CTAG	1 cut(s)	63
GlaI	GCGC	1 cut(s)	786
GluI	GCNGC	3 cut(s)	509, 732, 755
HaeII	RGCGCY	1 cut(s)	788
HaeIII	GGCC	2 cut(s)	129, 800
HapII	CCGG	2 cut(s)	473, 801
HhaI	GCGC	1 cut(s)	787
Hin1II	CATG	3 cut(s)	100, 301, 724
Hin6I	GCGC	1 cut(s)	785
HinP1I	GCGC	1 cut(s)	785
HincII	GTYRAC	1 cut(s)	664
HindII	GTYRAC	1 cut(s)	664
HindIII	AAGCTT	2 cut(s)	190, 209
HinfI	GANTC	2 cut(s)	246, 494
HpaII	CCGG	2 cut(s)	473, 801
HphI	GGTGA	3 cut(s)	160, 358, 637
Hpy166II	GTNNAC	4 cut(s)	361, 532, 605, 664
Hpy188I	TCNGA	2 cut(s)	207, 793
Hpy188III	TCNNGA	3 cut(s)	231, 473, 688
Hpy8I	GTNNAC	4 cut(s)	361, 532, 605, 664
HpyAV	CCTTC	2 cut(s)	231, 778
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4V	TGCA	8 cut(s)	80, 188, 308, 361, 383, 674, 713, 734
HpyF10VI	GCNNNNNNNGC	2 cut(s)	380, 737
HpyF3I	CTNAG	1 cut(s)	420
Hsp92II	CATG	3 cut(s)	100, 301, 724
HspAI	GCGC	1 cut(s)	785
KflI	GGGWCCC	1 cut(s)	523
Kpn2I	TCCGGA	1 cut(s)	472
Ksp22I	TGATCA	1 cut(s)	202
Kzo9I	GATC	2 cut(s)	202, 385
Lsp1109I	GCAGC	3 cut(s)	520, 718, 766
MaeI	CTAG	1 cut(s)	63
MaeIII	GTNAC	2 cut(s)	313, 409
MalI	GATC	2 cut(s)	204, 387
MboI	GATC	2 cut(s)	202, 385
MboII	GAAGA	5 cut(s)	28, 167, 170, 246, 772
MfeI	CAATTG	1 cut(s)	714
MflI	RGATCY	1 cut(s)	385
MhlI	GDGCHC	3 cut(s)	168, 363, 433
MluCI	AATT	8 cut(s)	154, 276, 323, 369, 399, 448, 683, 714
MlyI	GAGTC	1 cut(s)	503
MnlI	CCTC	8 cut(s)	183, 399, 429, 450, 574, 623, 801, 824
MroI	TCCGGA	1 cut(s)	472
MseI	TTAA	2 cut(s)	303, 702
MspI	CCGG	2 cut(s)	473, 801
MspR9I	CCNGG	1 cut(s)	802
MunI	CAATTG	1 cut(s)	714
MwoI	GCNNNNNNNGC	2 cut(s)	380, 737
NciI	CCSGG	1 cut(s)	802
NdeII	GATC	2 cut(s)	202, 385
NlaIII	CATG	3 cut(s)	100, 301, 724
NlaIV	GGNNCC	3 cut(s)	524, 525, 812
NmuCI	GTSAC	1 cut(s)	409
NspI	RCATGY	1 cut(s)	301
PaeI	GCATGC	1 cut(s)	301
PfeI	GAWTC	1 cut(s)	246
PkrI	GCNGC	3 cut(s)	510, 733, 756
PleI	GAGTC	1 cut(s)	502
PpsI	GAGTC	1 cut(s)	502
PpuMI	RGGWCCY	1 cut(s)	523
Psp124BI	GAGCTC	1 cut(s)	168
Psp5II	RGGWCCY	1 cut(s)	523
PspN4I	GGNNCC	3 cut(s)	524, 525, 812
PspPI	GGNCC	3 cut(s)	128, 470, 523
PspPPI	RGGWCCY	1 cut(s)	523
PstI	CTGCAG	1 cut(s)	736
PsuI	RGATCY	1 cut(s)	385
RsaI	GTAC	2 cut(s)	94, 150
RsaNI	GTAC	2 cut(s)	93, 149
SacI	GAGCTC	1 cut(s)	168
SaqAI	TTAA	2 cut(s)	303, 702
SatI	GCNGC	3 cut(s)	509, 732, 755
Sau3AI	GATC	2 cut(s)	202, 385
Sau96I	GGNCC	3 cut(s)	128, 470, 523
SchI	GAGTC	1 cut(s)	503
ScrFI	CCNGG	1 cut(s)	802
SduI	GDGCHC	3 cut(s)	168, 363, 433
SetI	ASST	8 cut(s)	168, 194, 213, 242, 348, 461, 742, 812
SfcI	CTRYAG	2 cut(s)	563, 732
SinI	GGWCC	2 cut(s)	470, 523
SphI	GCATGC	1 cut(s)	301
Sse9I	AATT	8 cut(s)	154, 276, 323, 369, 399, 448, 683, 714
SspI	AATATT	1 cut(s)	542
SspMI	CTAG	1 cut(s)	63
SstI	GAGCTC	1 cut(s)	168
StyD4I	CCNGG	1 cut(s)	800
TaaI	ACNGT	1 cut(s)	70
TaqI	TCGA	2 cut(s)	244, 822
TasI	AATT	8 cut(s)	154, 276, 323, 369, 399, 448, 683, 714
TfiI	GAWTC	1 cut(s)	246
Tru1I	TTAA	2 cut(s)	303, 702
Tru9I	TTAA	2 cut(s)	303, 702
TscAI	CASTG	1 cut(s)	715
TseFI	GTSAC	1 cut(s)	409
TseI	GCWGC	3 cut(s)	508, 731, 754
Tsp45I	GTSAC	1 cut(s)	409
TspDTI	ATGAA	3 cut(s)	113, 131, 760
TspRI	CASTG	1 cut(s)	715
VneI	GTGCAC	1 cut(s)	359
VpaK11BI	GGWCC	2 cut(s)	470, 523
XagI	CCTNNNNNAGG	1 cut(s)	341
XapI	RAATTY	1 cut(s)	154
XceI	RCATGY	1 cut(s)	301
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.