FvH4_1g05530

Bark storage protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000829
Physical Location & Seq
Reverse (-)
2912049 .. 2914026
1978 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g05530.t1

Sequence Viewer

Length: 1020 bp
ATGGAGATGGTGTTTGCGGTTTTCTTTGTATTGGTGTTGGGGATTAGCACTAGAACAGTTGATGGTGCAGTTTCCCAAAGTACCATGAAAAAGATTGATATGATGAATAAGAAAGGCCCATACTTGGGTATTGTAGTACCTAATTCCTTTGAGCTCACCCCTCTTCTTGAATCTGCAAGCTTTGTGGCTGATCAGAAGCTTCCCACTTTGGATTTTTCAGGAAGAAGGTTTCGATTCGGTAGGTTGGATAATCAGAGTGTTGTTATAACTATGACAGGGTTGAGCATGCTTAATGCAGGTGTAACAACTCAATTATTGCTAAGCCTATTCAAGGTGAAAGGGGTTGTGCACTATGGAATTGCAGGGAACGCAGATCCTCAACTTCAAATCGGAGATGTCACTATCCCTCAGTATTGGGCTCATACAGGCCTTTGGAATTGGCAGAGGTTTGGGGATGGTCCTGATGATTTGTTATCCTTGGAGCCATTCGGAGACTACACTAGGGATGTTGGTTACATAAAATTTTCCGATTACAACAACAAAACTGTCGAAAATTCTCTGAACAATGCGTGGTACCAACCGGAAGAGATCTTCCCAGTTTTTGGCACTCCTGAAGTTCGGCAGCACGCATTTTGGGTCCCTGTAAACAGAAAATATTTTGCACTTGCTCAACAACTTTTGGATTTGAAGTTAGAGAGCTGTGTGAATACAACTTGTTTACCAAGAACACCAATAATAATGAGAGTGGAAAGGGGGATCAGTGCCAATGTGTTTGTCGACAATAGAGCATATAGACAATTCTTGAACACCAAGTTTAATGCAACTGCAATTGACATGGAAAGTGCCGCAGTAGCTCTGGTGTGCAAACAGCAAAAGAAACCCTTCATTGTCATTAGGGCGCTATCAGATTTGGCCGGTGGAGGCTCTTCTGTCTCGAATGAAGCCTCTACTTTCGCATCATTGGCAGCTCAAAATGCAGTCACCGTAGTGCTCAAATTCATTTCCTTGTTGTCTCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNP_UDP_1

Protein Analysis

340

Amino Acids

37.59

Weight (kDa)

8.33

Isoelectric Point (pI)

24.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNP_UDP_1 PF01048 42 - 334 4.9e-30 Phosphorylase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 266
AarI CACCTGC 1 cut(s) 287
Acc36I ACCTGC 1 cut(s) 287
Acc65I GGTACC 1 cut(s) 573
AccB1I GGYRCC 1 cut(s) 573
AccB7I CCANNNNNTGG 1 cut(s) 602
AccI GTMKAC 1 cut(s) 777
AciI CCGC 2 cut(s) 17, 846
AclWI GGATC 2 cut(s) 368, 764
AcoI YGGCCR 1 cut(s) 912
AcsI RAATTY 3 cut(s) 521, 553, 995
AcuI CTGAAG 1 cut(s) 633
AfaI GTAC 3 cut(s) 82, 138, 575
AfiI CCNNNNNNNGG 4 cut(s) 124, 125, 331, 602
AgsI TTSAA 5 cut(s) 170, 331, 386, 688, 805
AleI CACNNNNGTG 1 cut(s) 986
AluBI AGCT 6 cut(s) 154, 180, 199, 699, 854, 968
AluI AGCT 6 cut(s) 154, 180, 199, 699, 854, 968
Alw21I GWGCWC 3 cut(s) 156, 351, 993
Alw26I GTCTC 2 cut(s) 486, 937
Alw44I GTGCAC 1 cut(s) 347
AlwI GGATC 2 cut(s) 368, 764
AoxI GGCC 3 cut(s) 115, 427, 912
ApaLI GTGCAC 1 cut(s) 347
ApeKI GCWGC 2 cut(s) 622, 965
ApoI RAATTY 3 cut(s) 521, 553, 995
Asp700I GAANNNNTTC 1 cut(s) 881
Asp718I GGTACC 1 cut(s) 573
AspLEI GCGC 1 cut(s) 901
AspS9I GGNCC 3 cut(s) 116, 458, 637
AsuHPI GGTGA 3 cut(s) 148, 346, 973
AvaII GGWCC 2 cut(s) 458, 637
BaeGI GKGCMC 1 cut(s) 351
BanI GGYRCC 1 cut(s) 573
BanII GRGCYC 2 cut(s) 156, 421
Bbv12I GWGCWC 3 cut(s) 156, 351, 993
BbvI GCAGC 2 cut(s) 634, 977
BccI CCATC 2 cut(s) 56, 449
BclI TGATCA 1 cut(s) 190
BcoDI GTCTC 2 cut(s) 486, 937
BfaI CTAG 3 cut(s) 51, 501, 1018
BfoI RGCGCY 1 cut(s) 902
BfuAI ACCTGC 1 cut(s) 287
BglII AGATCT 1 cut(s) 588
BisI GCNGC 3 cut(s) 623, 846, 966
BlpI GCTNAGC 1 cut(s) 320
BlsI GCNGC 3 cut(s) 624, 847, 967
Bme18I GGWCC 2 cut(s) 458, 637
BmgT120I GGNCC 3 cut(s) 116, 458, 637
BmiI GGNNCC 4 cut(s) 483, 575, 638, 639
BmrI ACTGGG 1 cut(s) 590
BmsI GCATC 1 cut(s) 965
BmuI ACTGGG 1 cut(s) 590
Bpu1102I GCTNAGC 1 cut(s) 320
BsaJI CCNNGG 1 cut(s) 477
BsaWI WCCGGW 1 cut(s) 580
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 4 cut(s) 124, 125, 331, 602
Bse118I RCCGGY 1 cut(s) 914
Bse1I ACTGG 1 cut(s) 596
BseDI CCNNGG 1 cut(s) 477
BseGI GGATG 2 cut(s) 460, 511
BseLI CCNNNNNNNGG 4 cut(s) 124, 125, 331, 602
BseMII CTCAG 1 cut(s) 422
BseNI ACTGG 1 cut(s) 596
BseSI GKGCMC 1 cut(s) 351
BseXI GCAGC 2 cut(s) 634, 977
BsgI GTGCAG 1 cut(s) 87
BshFI GGCC 3 cut(s) 117, 429, 914
BshNI GGYRCC 1 cut(s) 573
BsiHKAI GWGCWC 3 cut(s) 156, 351, 993
BsiSI CCGG 2 cut(s) 581, 915
BslFI GGGAC 1 cut(s) 623
BslI CCNNNNNNNGG 4 cut(s) 124, 125, 331, 602
BsmAI GTCTC 2 cut(s) 486, 937
BsmFI GGGAC 1 cut(s) 623
BsnI GGCC 3 cut(s) 117, 429, 914
Bsp1286I GDGCHC 4 cut(s) 156, 351, 421, 993
Bsp143I GATC 4 cut(s) 190, 373, 588, 756
Bsp1720I GCTNAGC 1 cut(s) 320
BspACI CCGC 2 cut(s) 17, 846
BspANI GGCC 3 cut(s) 117, 429, 914
BspCNI CTCAG 1 cut(s) 421
BspLI GGNNCC 4 cut(s) 483, 575, 638, 639
BspMI ACCTGC 1 cut(s) 287
BspPI GGATC 2 cut(s) 368, 764
BspQI GCTCTTC 1 cut(s) 931
BspT107I GGYRCC 1 cut(s) 573
BsrFI RCCGGY 1 cut(s) 914
BsrI ACTGG 1 cut(s) 596
BssAI RCCGGY 1 cut(s) 914
BssECI CCNNGG 1 cut(s) 477
BssMI GATC 4 cut(s) 190, 373, 588, 756
BssT1I CCWWGG 1 cut(s) 477
Bst4CI ACNGT 3 cut(s) 58, 547, 985
Bst6I CTCTTC 3 cut(s) 168, 579, 931
BstC8I GCNNGC 3 cut(s) 178, 287, 627
BstDEI CTNAG 2 cut(s) 320, 408
BstENI CCTNNNNNAGG 1 cut(s) 329
BstF5I GGATG 2 cut(s) 460, 511
BstH2I RGCGCY 1 cut(s) 902
BstHHI GCGC 1 cut(s) 901
BstKTI GATC 4 cut(s) 193, 376, 591, 759
BstMAI GTCTC 2 cut(s) 486, 937
BstMBI GATC 4 cut(s) 190, 373, 588, 756
BstMWI GCNNNNNNNGC 4 cut(s) 368, 851, 962, 974
BstNSI RCATGY 1 cut(s) 289
BstSLI GKGCMC 1 cut(s) 351
BstV1I GCAGC 2 cut(s) 634, 977
BstX2I RGATCY 2 cut(s) 373, 588
BstYI RGATCY 2 cut(s) 373, 588
BsuRI GGCC 3 cut(s) 117, 429, 914
BtsCI GGATG 2 cut(s) 460, 511
BtsIMutI CAGTG 1 cut(s) 766
BveI ACCTGC 1 cut(s) 287
Cac8I GCNNGC 3 cut(s) 178, 287, 627
CfoI GCGC 1 cut(s) 901
Cfr10I RCCGGY 1 cut(s) 914
Cfr13I GGNCC 3 cut(s) 116, 458, 637
Csp6I GTAC 3 cut(s) 81, 137, 574
CspCI CAANNNNNGTGG 2 cut(s) 165, 200
CviAII CATG 3 cut(s) 85, 286, 835
CviQI GTAC 3 cut(s) 81, 137, 574
DdeI CTNAG 2 cut(s) 320, 408
DpnI GATC 4 cut(s) 192, 375, 590, 758
DpnII GATC 4 cut(s) 190, 373, 588, 756
EaeI YGGCCR 1 cut(s) 912
Eam1104I CTCTTC 3 cut(s) 168, 579, 931
EarI CTCTTC 3 cut(s) 168, 579, 931
Ecl136II GAGCTC 1 cut(s) 154
Eco130I CCWWGG 1 cut(s) 477
Eco147I AGGCCT 1 cut(s) 429
Eco24I GRGCYC 2 cut(s) 156, 421
Eco47I GGWCC 2 cut(s) 458, 637
Eco53kI GAGCTC 1 cut(s) 154
Eco57I CTGAAG 1 cut(s) 633
EcoICRI GAGCTC 1 cut(s) 154
EcoNI CCTNNNNNAGG 1 cut(s) 329
EcoO109I RGGNCCY 1 cut(s) 637
EcoT14I CCWWGG 1 cut(s) 477
EcoT38I GRGCYC 2 cut(s) 156, 421
ErhI CCWWGG 1 cut(s) 477
FaeI CATG 3 cut(s) 88, 289, 838
FalI AAGNNNNNCTT 2 cut(s) 866, 898
FaqI GGGAC 1 cut(s) 623
FatI CATG 3 cut(s) 84, 285, 834
FbaI TGATCA 1 cut(s) 190
FblI GTMKAC 1 cut(s) 777
Fnu4HI GCNGC 3 cut(s) 623, 846, 966
FokI GGATG 2 cut(s) 467, 518
FriOI GRGCYC 2 cut(s) 156, 421
Fsp4HI GCNGC 3 cut(s) 623, 846, 966
FspBI CTAG 3 cut(s) 51, 501, 1018
GlaI GCGC 1 cut(s) 900
GluI GCNGC 3 cut(s) 623, 846, 966
HaeII RGCGCY 1 cut(s) 902
HaeIII GGCC 3 cut(s) 117, 429, 914
HapII CCGG 2 cut(s) 581, 915
HhaI GCGC 1 cut(s) 901
Hin1II CATG 3 cut(s) 88, 289, 838
Hin6I GCGC 1 cut(s) 899
HinP1I GCGC 1 cut(s) 899
HincII GTYRAC 1 cut(s) 778
HindII GTYRAC 1 cut(s) 778
HindIII AAGCTT 2 cut(s) 178, 197
HinfI GANTC 2 cut(s) 170, 234
HpaII CCGG 2 cut(s) 581, 915
HphI GGTGA 3 cut(s) 148, 346, 973
Hpy166II GTNNAC 4 cut(s) 349, 646, 719, 778
Hpy188I TCNGA 7 cut(s) 195, 255, 392, 491, 529, 561, 907
Hpy188III TCNNGA 6 cut(s) 167, 219, 461, 611, 802, 934
Hpy8I GTNNAC 4 cut(s) 349, 646, 719, 778
HpyAV CCTTC 2 cut(s) 219, 892
HpyCH4III ACNGT 3 cut(s) 58, 547, 985
HpyF10VI GCNNNNNNNGC 4 cut(s) 368, 851, 962, 974
HpyF3I CTNAG 2 cut(s) 320, 408
Hsp92II CATG 3 cut(s) 88, 289, 838
HspAI GCGC 1 cut(s) 899
KflI GGGWCCC 1 cut(s) 637
KpnI GGTACC 1 cut(s) 577
Ksp22I TGATCA 1 cut(s) 190
Kzo9I GATC 4 cut(s) 190, 373, 588, 756
LguI GCTCTTC 1 cut(s) 931
LmnI GCTCC 1 cut(s) 481
Lsp1109I GCAGC 2 cut(s) 634, 977
LweI GCATC 1 cut(s) 965
MaeI CTAG 3 cut(s) 51, 501, 1018
MaeIII GTNAC 4 cut(s) 301, 397, 512, 979
MalI GATC 4 cut(s) 192, 375, 590, 758
MboI GATC 4 cut(s) 190, 373, 588, 756
MboII GAAGA 5 cut(s) 155, 234, 583, 596, 918
MfeI CAATTG 1 cut(s) 828
MflI RGATCY 2 cut(s) 373, 588
MhlI GDGCHC 4 cut(s) 156, 351, 421, 993
MluCI AATT 9 cut(s) 142, 311, 357, 436, 521, 553, 797, 828, 995
MmeI TCCRAC 1 cut(s) 225
MnlI CCTC 6 cut(s) 171, 387, 417, 438, 914, 955
MroXI GAANNNNTTC 1 cut(s) 881
MseI TTAA 2 cut(s) 291, 816
MslI CAYNNNNRTG 1 cut(s) 986
MspI CCGG 2 cut(s) 581, 915
MunI CAATTG 1 cut(s) 828
MwoI GCNNNNNNNGC 4 cut(s) 368, 851, 962, 974
NdeII GATC 4 cut(s) 190, 373, 588, 756
NlaIII CATG 3 cut(s) 88, 289, 838
NlaIV GGNNCC 4 cut(s) 483, 575, 638, 639
NmuCI GTSAC 2 cut(s) 397, 979
NspI RCATGY 1 cut(s) 289
OliI CACNNNNGTG 1 cut(s) 986
PaeI GCATGC 1 cut(s) 289
PaqCI CACCTGC 1 cut(s) 287
PceI AGGCCT 1 cut(s) 429
PciSI GCTCTTC 1 cut(s) 931
PdmI GAANNNNTTC 1 cut(s) 881
PfeI GAWTC 2 cut(s) 170, 234
PflMI CCANNNNNTGG 1 cut(s) 602
PkrI GCNGC 3 cut(s) 624, 847, 967
PpuMI RGGWCCY 1 cut(s) 637
PsiI TTATAA 1 cut(s) 266
Psp124BI GAGCTC 1 cut(s) 156
Psp5II RGGWCCY 1 cut(s) 637
PspN4I GGNNCC 4 cut(s) 483, 575, 638, 639
PspPI GGNCC 3 cut(s) 116, 458, 637
PspPPI RGGWCCY 1 cut(s) 637
PsuI RGATCY 2 cut(s) 373, 588
RsaI GTAC 3 cut(s) 82, 138, 575
RsaNI GTAC 3 cut(s) 81, 137, 574
RseI CAYNNNNRTG 1 cut(s) 986
SacI GAGCTC 1 cut(s) 156
SalI GTCGAC 1 cut(s) 776
SapI GCTCTTC 1 cut(s) 931
SaqAI TTAA 2 cut(s) 291, 816
SatI GCNGC 3 cut(s) 623, 846, 966
Sau3AI GATC 4 cut(s) 190, 373, 588, 756
Sau96I GGNCC 3 cut(s) 116, 458, 637
SduI GDGCHC 4 cut(s) 156, 351, 421, 993
SfaNI GCATC 1 cut(s) 965
SinI GGWCC 2 cut(s) 458, 637
SmiMI CAYNNNNRTG 1 cut(s) 986
SphI GCATGC 1 cut(s) 289
Sse9I AATT 9 cut(s) 142, 311, 357, 436, 521, 553, 797, 828, 995
SseBI AGGCCT 1 cut(s) 429
SsiI CCGC 2 cut(s) 17, 846
SspI AATATT 1 cut(s) 656
SspMI CTAG 3 cut(s) 51, 501, 1018
SstI GAGCTC 1 cut(s) 156
StuI AGGCCT 1 cut(s) 429
StyI CCWWGG 1 cut(s) 477
TaaI ACNGT 3 cut(s) 58, 547, 985
TaqI TCGA 4 cut(s) 232, 549, 777, 935
TasI AATT 9 cut(s) 142, 311, 357, 436, 521, 553, 797, 828, 995
TauI GCSGC 1 cut(s) 848
TfiI GAWTC 2 cut(s) 170, 234
Tru1I TTAA 2 cut(s) 291, 816
Tru9I TTAA 2 cut(s) 291, 816
TscAI CASTG 1 cut(s) 766
TseFI GTSAC 2 cut(s) 397, 979
TseI GCWGC 2 cut(s) 622, 965
Tsp45I GTSAC 2 cut(s) 397, 979
TspDTI ATGAA 5 cut(s) 101, 119, 874, 954, 988
TspRI CASTG 1 cut(s) 766
Van91I CCANNNNNTGG 1 cut(s) 602
VneI GTGCAC 1 cut(s) 347
VpaK11BI GGWCC 2 cut(s) 458, 637
XagI CCTNNNNNAGG 1 cut(s) 329
XapI RAATTY 3 cut(s) 521, 553, 995
XceI RCATGY 1 cut(s) 289
XmiI GTMKAC 1 cut(s) 777
XmnI GAANNNNTTC 1 cut(s) 881
XspI CTAG 3 cut(s) 51, 501, 1018
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.