Rh2DG059700

Bark storage protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000829
Physical Location & Seq
Reverse (-)
4375449 .. 4378254
2806 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG059700.1

Sequence Viewer

Length: 1047 bp
ATGGAGAGCCATTTGAAGATGGTGTTAGTGGTTTTCTTTGTATTGGTTTTAGGGATTAGCACTAGAACAGTTGATGGTGCAGTTTCTCAAAGTACCATGAAAAAGATTGATAGGATGAATAGGAAAGGCCCATACTTGGGTATTATAGTACCAAATTCCTTTGAGCTCACCCCTCTTCTTCAATCGGCAAGCTTTGTGACTGATCAGAAGCTTCCCAGTTTGGATTTTTCAGGAAGAAGGTTTCGATTTGGTAGATTGGATAATCAAAGTGTTGTAATTGCTATGACAGGGTTGAGCATGCTTAATGCAGGTGTAACAACTCAATTATTGCTAACCCTATTCAAGGTGAAAGGGGTTGTGCACTATGGAATTGCAGGAAATGCAGATCCTCAACTCCAAATTGGAGATGTCACTATCGCTCAGTACTGGGCTCATACAGGCCTTTGGAATTGGCAGAGGTTTGGGGATGGTCCTGATAATTTGTTATCCTTGGAGTCATTCGGAGACTACACTAGGGATGTTGGTTACATAAAATTTTCCGAATTCAACAACAAAACAGAAACTGAGAAGTCTGTTGACAATTTTCTGAACAATGCATGGTACCAACCGGAAGAGATCTTCCCAGTTTATGGCACTCCTGAAGTTCGGCAGCATGCCTTTTGGGTCCCCGTAAACAAAAAATATTTTGCACTTGCTCAACAACTACTGGATTTGAAGTTAGAGAGTTGCGTGAATACAACTTGTTTACCAAGAGCACCAATAGTGGTGAGAGTGCAAAGAGGGATCAGTGCCAATGTGTTTGTGGACAATAGTGCATATAGACAATTCTTGAACTCCAAGTTTAATGCCACTGCAATTGACATGGAAAGTGCTGCAGTAGCTCTGGTCTGTAAACAGCAAAAGACACCTTTCATTGTGATTAGGGCGCTATCAGATTTGGCTGGGGGAGGCTCCTCTGTGTCGAATGAAGCCTCTATTTTCGAATCATTGGCAGCTCAAAATGCAGTCACCGTCGTGCTCAAATTCATCTCCTTGTTGCCTTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNP_UDP_1

Protein Analysis

348

Amino Acids

38.56

Weight (kDa)

8.65

Isoelectric Point (pI)

27.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNP_UDP_1 PF01048 46 - 343 5.9e-30 Phosphorylase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 299
Acc36I ACCTGC 1 cut(s) 299
Acc65I GGTACC 1 cut(s) 600
AccB1I GGYRCC 1 cut(s) 600
AccB7I CCANNNNNTGG 1 cut(s) 629
AclWI GGATC 2 cut(s) 380, 791
AcsI RAATTY 4 cut(s) 154, 533, 542, 1022
AcuI CTGAAG 1 cut(s) 660
AfaI GTAC 4 cut(s) 94, 150, 425, 602
AfiI CCNNNNNNNGG 4 cut(s) 136, 137, 343, 629
AgsI TTSAA 6 cut(s) 16, 182, 343, 547, 715, 832
AleI CACNNNNGTG 1 cut(s) 1013
AluBI AGCT 5 cut(s) 166, 192, 211, 881, 995
AluI AGCT 5 cut(s) 166, 192, 211, 881, 995
Alw21I GWGCWC 4 cut(s) 168, 363, 757, 1020
Alw26I GTCTC 1 cut(s) 498
Alw44I GTGCAC 1 cut(s) 359
AlwI GGATC 2 cut(s) 380, 791
AlwNI CAGNNNCTG 1 cut(s) 563
AoxI GGCC 2 cut(s) 127, 439
ApaLI GTGCAC 1 cut(s) 359
ApeKI GCWGC 3 cut(s) 649, 872, 992
ApoI RAATTY 4 cut(s) 154, 533, 542, 1022
Asp718I GGTACC 1 cut(s) 600
AspLEI GCGC 1 cut(s) 928
AspS9I GGNCC 3 cut(s) 128, 470, 664
AsuHPI GGTGA 4 cut(s) 160, 358, 778, 1000
AsuII TTCGAA 1 cut(s) 981
AvaII GGWCC 2 cut(s) 470, 664
BaeGI GKGCMC 1 cut(s) 363
BanI GGYRCC 1 cut(s) 600
BanII GRGCYC 2 cut(s) 168, 433
Bbv12I GWGCWC 4 cut(s) 168, 363, 757, 1020
BbvI GCAGC 3 cut(s) 661, 859, 1004
BccI CCATC 3 cut(s) 13, 68, 461
BclI TGATCA 1 cut(s) 202
BcoDI GTCTC 1 cut(s) 498
BfaI CTAG 3 cut(s) 63, 513, 1045
BfmI CTRYAG 1 cut(s) 873
BfoI RGCGCY 1 cut(s) 929
BfuAI ACCTGC 1 cut(s) 299
BglII AGATCT 1 cut(s) 615
BisI GCNGC 3 cut(s) 650, 873, 993
BlsI GCNGC 3 cut(s) 651, 874, 994
BmcAI AGTACT 1 cut(s) 425
Bme18I GGWCC 2 cut(s) 470, 664
BmgT120I GGNCC 3 cut(s) 128, 470, 664
BmiI GGNNCC 4 cut(s) 602, 665, 666, 952
BmrI ACTGGG 3 cut(s) 210, 436, 617
BmuI ACTGGG 3 cut(s) 210, 436, 617
Bpu14I TTCGAA 1 cut(s) 981
BsaJI CCNNGG 1 cut(s) 489
BsaWI WCCGGW 1 cut(s) 607
Bsc4I CCNNNNNNNGG 4 cut(s) 136, 137, 343, 629
Bse1I ACTGG 4 cut(s) 216, 431, 623, 711
BseDI CCNNGG 1 cut(s) 489
BseGI GGATG 3 cut(s) 120, 472, 523
BseLI CCNNNNNNNGG 4 cut(s) 136, 137, 343, 629
BseMII CTCAG 2 cut(s) 434, 555
BseNI ACTGG 4 cut(s) 216, 431, 623, 711
BseRI GAGGAG 1 cut(s) 943
BseSI GKGCMC 1 cut(s) 363
BseXI GCAGC 3 cut(s) 661, 859, 1004
BseYI CCCAGC 1 cut(s) 941
BsgI GTGCAG 1 cut(s) 99
BshFI GGCC 2 cut(s) 129, 441
BshNI GGYRCC 1 cut(s) 600
BsiHKAI GWGCWC 4 cut(s) 168, 363, 757, 1020
BsiSI CCGG 1 cut(s) 608
BslFI GGGAC 1 cut(s) 650
BslI CCNNNNNNNGG 4 cut(s) 136, 137, 343, 629
BsmAI GTCTC 1 cut(s) 498
BsmFI GGGAC 1 cut(s) 650
BsnI GGCC 2 cut(s) 129, 441
Bsp119I TTCGAA 1 cut(s) 981
Bsp1286I GDGCHC 5 cut(s) 168, 363, 433, 757, 1020
Bsp143I GATC 4 cut(s) 202, 385, 615, 783
BspANI GGCC 2 cut(s) 129, 441
BspCNI CTCAG 2 cut(s) 433, 556
BspLI GGNNCC 4 cut(s) 602, 665, 666, 952
BspMAI CTGCAG 1 cut(s) 877
BspMI ACCTGC 1 cut(s) 299
BspPI GGATC 2 cut(s) 380, 791
BspT104I TTCGAA 1 cut(s) 981
BspT107I GGYRCC 1 cut(s) 600
BsrI ACTGG 4 cut(s) 216, 431, 623, 711
BssECI CCNNGG 1 cut(s) 489
BssMI GATC 4 cut(s) 202, 385, 615, 783
BssT1I CCWWGG 1 cut(s) 489
Bst4CI ACNGT 2 cut(s) 70, 1012
Bst6I CTCTTC 2 cut(s) 180, 606
BstAPI GCANNNNNTGC 1 cut(s) 380
BstBI TTCGAA 1 cut(s) 981
BstC8I GCNNGC 3 cut(s) 190, 299, 654
BstDEI CTNAG 2 cut(s) 420, 564
BstENI CCTNNNNNAGG 1 cut(s) 341
BstF5I GGATG 3 cut(s) 120, 472, 523
BstH2I RGCGCY 1 cut(s) 929
BstHHI GCGC 1 cut(s) 928
BstKTI GATC 4 cut(s) 205, 388, 618, 786
BstMAI GTCTC 1 cut(s) 498
BstMBI GATC 4 cut(s) 202, 385, 615, 783
BstMWI GCNNNNNNNGC 3 cut(s) 380, 878, 1001
BstNSI RCATGY 2 cut(s) 301, 656
BstSFI CTRYAG 1 cut(s) 873
BstSLI GKGCMC 1 cut(s) 363
BstV1I GCAGC 3 cut(s) 661, 859, 1004
BstX2I RGATCY 2 cut(s) 385, 615
BstYI RGATCY 2 cut(s) 385, 615
BsuRI GGCC 2 cut(s) 129, 441
BtsCI GGATG 3 cut(s) 120, 472, 523
BtsI GCAGTG 1 cut(s) 849
BtsIMutI CAGTG 2 cut(s) 793, 849
BveI ACCTGC 1 cut(s) 299
Cac8I GCNNGC 3 cut(s) 190, 299, 654
CaiI CAGNNNCTG 1 cut(s) 563
CfoI GCGC 1 cut(s) 928
Cfr13I GGNCC 3 cut(s) 128, 470, 664
Csp6I GTAC 4 cut(s) 93, 149, 424, 601
CspCI CAANNNNNGTGG 2 cut(s) 838, 873
CviAII CATG 5 cut(s) 97, 298, 597, 653, 862
CviQI GTAC 4 cut(s) 93, 149, 424, 601
DdeI CTNAG 2 cut(s) 420, 564
DpnI GATC 4 cut(s) 204, 387, 617, 785
DpnII GATC 4 cut(s) 202, 385, 615, 783
Eam1104I CTCTTC 2 cut(s) 180, 606
EarI CTCTTC 2 cut(s) 180, 606
Ecl136II GAGCTC 1 cut(s) 166
Eco130I CCWWGG 1 cut(s) 489
Eco147I AGGCCT 1 cut(s) 441
Eco24I GRGCYC 2 cut(s) 168, 433
Eco47I GGWCC 2 cut(s) 470, 664
Eco53kI GAGCTC 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 660
EcoICRI GAGCTC 1 cut(s) 166
EcoNI CCTNNNNNAGG 1 cut(s) 341
EcoO109I RGGNCCY 1 cut(s) 664
EcoRI GAATTC 1 cut(s) 542
EcoT14I CCWWGG 1 cut(s) 489
EcoT22I ATGCAT 1 cut(s) 598
EcoT38I GRGCYC 2 cut(s) 168, 433
ErhI CCWWGG 1 cut(s) 489
FaeI CATG 5 cut(s) 100, 301, 600, 656, 865
FaqI GGGAC 1 cut(s) 650
FatI CATG 5 cut(s) 96, 297, 596, 652, 861
FbaI TGATCA 1 cut(s) 202
Fnu4HI GCNGC 3 cut(s) 650, 873, 993
FokI GGATG 3 cut(s) 127, 479, 530
FriOI GRGCYC 2 cut(s) 168, 433
Fsp4HI GCNGC 3 cut(s) 650, 873, 993
FspBI CTAG 3 cut(s) 63, 513, 1045
GlaI GCGC 1 cut(s) 927
GluI GCNGC 3 cut(s) 650, 873, 993
GsaI CCCAGC 1 cut(s) 945
HaeII RGCGCY 1 cut(s) 929
HaeIII GGCC 2 cut(s) 129, 441
HapII CCGG 1 cut(s) 608
HhaI GCGC 1 cut(s) 928
Hin1II CATG 5 cut(s) 100, 301, 600, 656, 865
Hin6I GCGC 1 cut(s) 926
HinP1I GCGC 1 cut(s) 926
HincII GTYRAC 1 cut(s) 577
HindII GTYRAC 1 cut(s) 577
HindIII AAGCTT 2 cut(s) 190, 209
HinfI GANTC 2 cut(s) 494, 983
HpaII CCGG 1 cut(s) 608
HphI GGTGA 4 cut(s) 160, 358, 778, 1000
Hpy166II GTNNAC 6 cut(s) 361, 577, 673, 746, 805, 893
Hpy188I TCNGA 5 cut(s) 207, 503, 541, 588, 934
Hpy188III TCNNGA 4 cut(s) 231, 473, 638, 829
Hpy8I GTNNAC 6 cut(s) 361, 577, 673, 746, 805, 893
Hpy99I CGWCG 1 cut(s) 1016
HpyAV CCTTC 1 cut(s) 231
HpyCH4III ACNGT 2 cut(s) 70, 1012
HpyF10VI GCNNNNNNNGC 3 cut(s) 380, 878, 1001
HpyF3I CTNAG 2 cut(s) 420, 564
Hsp92II CATG 5 cut(s) 100, 301, 600, 656, 865
HspAI GCGC 1 cut(s) 926
KflI GGGWCCC 1 cut(s) 664
KpnI GGTACC 1 cut(s) 604
Ksp22I TGATCA 1 cut(s) 202
Kzo9I GATC 4 cut(s) 202, 385, 615, 783
LmnI GCTCC 1 cut(s) 956
Lsp1109I GCAGC 3 cut(s) 661, 859, 1004
MaeI CTAG 3 cut(s) 63, 513, 1045
MaeIII GTNAC 5 cut(s) 196, 313, 409, 524, 1006
MalI GATC 4 cut(s) 204, 387, 617, 785
MboI GATC 4 cut(s) 202, 385, 615, 783
MboII GAAGA 6 cut(s) 28, 167, 170, 246, 610, 623
MfeI CAATTG 1 cut(s) 855
MflI RGATCY 2 cut(s) 385, 615
MhlI GDGCHC 5 cut(s) 168, 363, 433, 757, 1020
MlyI GAGTC 1 cut(s) 503
MnlI CCTC 7 cut(s) 183, 399, 450, 773, 941, 964, 982
Mph1103I ATGCAT 1 cut(s) 598
MseI TTAA 2 cut(s) 303, 843
MslI CAYNNNNRTG 1 cut(s) 1013
MspI CCGG 1 cut(s) 608
MunI CAATTG 1 cut(s) 855
MwoI GCNNNNNNNGC 3 cut(s) 380, 878, 1001
NdeII GATC 4 cut(s) 202, 385, 615, 783
NlaIII CATG 5 cut(s) 100, 301, 600, 656, 865
NlaIV GGNNCC 4 cut(s) 602, 665, 666, 952
NmuCI GTSAC 3 cut(s) 196, 409, 1006
NsiI ATGCAT 1 cut(s) 598
NspI RCATGY 2 cut(s) 301, 656
NspV TTCGAA 1 cut(s) 981
OliI CACNNNNGTG 1 cut(s) 1013
PaeI GCATGC 2 cut(s) 301, 656
PaqCI CACCTGC 1 cut(s) 299
PceI AGGCCT 1 cut(s) 441
PfeI GAWTC 1 cut(s) 983
PflMI CCANNNNNTGG 1 cut(s) 629
PkrI GCNGC 3 cut(s) 651, 874, 994
PleI GAGTC 1 cut(s) 502
PpsI GAGTC 1 cut(s) 502
PpuMI RGGWCCY 1 cut(s) 664
Psp124BI GAGCTC 1 cut(s) 168
Psp5II RGGWCCY 1 cut(s) 664
PspFI CCCAGC 1 cut(s) 941
PspN4I GGNNCC 4 cut(s) 602, 665, 666, 952
PspPI GGNCC 3 cut(s) 128, 470, 664
PspPPI RGGWCCY 1 cut(s) 664
PstI CTGCAG 1 cut(s) 877
PstNI CAGNNNCTG 1 cut(s) 563
PsuI RGATCY 2 cut(s) 385, 615
RsaI GTAC 4 cut(s) 94, 150, 425, 602
RsaNI GTAC 4 cut(s) 93, 149, 424, 601
RseI CAYNNNNRTG 1 cut(s) 1013
SacI GAGCTC 1 cut(s) 168
SaqAI TTAA 2 cut(s) 303, 843
SatI GCNGC 3 cut(s) 650, 873, 993
Sau3AI GATC 4 cut(s) 202, 385, 615, 783
Sau96I GGNCC 3 cut(s) 128, 470, 664
ScaI AGTACT 1 cut(s) 425
SchI GAGTC 1 cut(s) 503
SduI GDGCHC 5 cut(s) 168, 363, 433, 757, 1020
SfcI CTRYAG 1 cut(s) 873
SfuI TTCGAA 1 cut(s) 981
SinI GGWCC 2 cut(s) 470, 664
SmiMI CAYNNNNRTG 1 cut(s) 1013
SphI GCATGC 2 cut(s) 301, 656
SseBI AGGCCT 1 cut(s) 441
SspI AATATT 1 cut(s) 683
SspMI CTAG 3 cut(s) 63, 513, 1045
SstI GAGCTC 1 cut(s) 168
StuI AGGCCT 1 cut(s) 441
StyI CCWWGG 1 cut(s) 489
TaaI ACNGT 2 cut(s) 70, 1012
TaqI TCGA 3 cut(s) 244, 962, 981
TatI WGTACW 1 cut(s) 423
TfiI GAWTC 1 cut(s) 983
Tru1I TTAA 2 cut(s) 303, 843
Tru9I TTAA 2 cut(s) 303, 843
TscAI CASTG 2 cut(s) 793, 856
TseFI GTSAC 3 cut(s) 196, 409, 1006
TseI GCWGC 3 cut(s) 649, 872, 992
Tsp45I GTSAC 3 cut(s) 196, 409, 1006
TspDTI ATGAA 5 cut(s) 113, 131, 901, 981, 1015
TspRI CASTG 2 cut(s) 793, 856
Van91I CCANNNNNTGG 1 cut(s) 629
VneI GTGCAC 1 cut(s) 359
VpaK11BI GGWCC 2 cut(s) 470, 664
XagI CCTNNNNNAGG 1 cut(s) 341
XapI RAATTY 4 cut(s) 154, 533, 542, 1022
XceI RCATGY 2 cut(s) 301, 656
XcmI CCANNNNNNNNNTGG 1 cut(s) 799
XspI CTAG 3 cut(s) 63, 513, 1045
ZrmI AGTACT 1 cut(s) 425
Zsp2I ATGCAT 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.