Rh6CG092500

Bark storage protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000829
Physical Location & Seq
Reverse (-)
10171631 .. 10172113
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG092500.1

Sequence Viewer

Length: 483 bp
ATGACAGGGTTGAGCATGCTTAATGCAGGAGTAACAACTCAATTATTGCTTACCCTATTCAAGGTGAAAGGGGTTGTGCACTATGGAATTGCAGGAAATGCAGATCCTCAACTCCAAATTGGAGATGTCACTATCCCTCAGTATTGGGCTCATACAAGACTTTGGAATTGGCAGAGGTTTGGGGATGGTCCGGATGATTTGTTATCTTTGGAGTCATTCGGTGACTACAACAGGGATGTTGGTCACATAAAATTTTCTGAATTCAACAACAAAACAGAAACTGAGAAGTCTGTTGATAATTTTCTGAACAATGCTTGGTACCAACCGGAAGAGATCTTCCCAGTTTATGGCACTCCTGAAGTTCGGCAGCACGCCTTTTGGGTCCCTGTAAACAAAAAATATTTTGCTCTTGCTCAACAACTACAGGATTTGAAGTTAGAGGGTTGTGTGATCATACAACTTGTTTACCAAGAACACCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNP_UDP_1

Protein Analysis

160

Amino Acids

18.4

Weight (kDa)

5.25

Isoelectric Point (pI)

29.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNP_UDP_1 PF01048 1 - 52 6.2e-08 Phosphorylase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 318
AccB1I GGYRCC 1 cut(s) 318
AccB7I CCANNNNNTGG 1 cut(s) 347
AccIII TCCGGA 1 cut(s) 190
AclWI GGATC 1 cut(s) 98
AcsI RAATTY 2 cut(s) 251, 260
AcuI CTGAAG 1 cut(s) 378
AfaI GTAC 1 cut(s) 320
AfiI CCNNNNNNNGG 2 cut(s) 61, 347
AgsI TTSAA 3 cut(s) 61, 265, 433
Alw21I GWGCWC 1 cut(s) 81
Alw44I GTGCAC 1 cut(s) 77
AlwI GGATC 1 cut(s) 98
AlwNI CAGNNNCTG 1 cut(s) 281
Aor13HI TCCGGA 1 cut(s) 190
ApaLI GTGCAC 1 cut(s) 77
ApeKI GCWGC 1 cut(s) 367
ApoI RAATTY 2 cut(s) 251, 260
Asp718I GGTACC 1 cut(s) 318
AspS9I GGNCC 2 cut(s) 188, 382
AsuHPI GGTGA 2 cut(s) 76, 233
AvaII GGWCC 2 cut(s) 188, 382
BaeGI GKGCMC 1 cut(s) 81
BanI GGYRCC 1 cut(s) 318
BanII GRGCYC 1 cut(s) 151
Bbv12I GWGCWC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 379
BccI CCATC 1 cut(s) 179
BclI TGATCA 1 cut(s) 450
BfmI CTRYAG 1 cut(s) 422
BglII AGATCT 1 cut(s) 333
BisI GCNGC 1 cut(s) 368
BlsI GCNGC 1 cut(s) 369
Bme18I GGWCC 2 cut(s) 188, 382
BmgT120I GGNCC 2 cut(s) 188, 382
BmiI GGNNCC 3 cut(s) 320, 383, 384
BmrI ACTGGG 1 cut(s) 335
BmuI ACTGGG 1 cut(s) 335
BsaWI WCCGGW 2 cut(s) 190, 325
Bsc4I CCNNNNNNNGG 2 cut(s) 61, 347
Bse1I ACTGG 1 cut(s) 341
BseAI TCCGGA 1 cut(s) 190
BseGI GGATG 3 cut(s) 190, 199, 241
BseLI CCNNNNNNNGG 2 cut(s) 61, 347
BseMII CTCAG 2 cut(s) 152, 273
BseNI ACTGG 1 cut(s) 341
BseSI GKGCMC 1 cut(s) 81
BseXI GCAGC 1 cut(s) 379
BshNI GGYRCC 1 cut(s) 318
BsiHKAI GWGCWC 1 cut(s) 81
BsiSI CCGG 2 cut(s) 191, 326
BslFI GGGAC 1 cut(s) 368
BslI CCNNNNNNNGG 2 cut(s) 61, 347
BsmFI GGGAC 1 cut(s) 368
Bsp1286I GDGCHC 2 cut(s) 81, 151
Bsp13I TCCGGA 1 cut(s) 190
Bsp143I GATC 3 cut(s) 103, 333, 450
BspCNI CTCAG 2 cut(s) 151, 274
BspEI TCCGGA 1 cut(s) 190
BspLI GGNNCC 3 cut(s) 320, 383, 384
BspPI GGATC 1 cut(s) 98
BspT107I GGYRCC 1 cut(s) 318
BsrI ACTGG 1 cut(s) 341
BssMI GATC 3 cut(s) 103, 333, 450
Bst6I CTCTTC 1 cut(s) 324
BstAPI GCANNNNNTGC 1 cut(s) 98
BstC8I GCNNGC 2 cut(s) 17, 372
BstDEI CTNAG 2 cut(s) 138, 282
BstENI CCTNNNNNAGG 1 cut(s) 59
BstF5I GGATG 3 cut(s) 190, 199, 241
BstKTI GATC 3 cut(s) 106, 336, 453
BstMBI GATC 3 cut(s) 103, 333, 450
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstNSI RCATGY 1 cut(s) 19
BstSFI CTRYAG 1 cut(s) 422
BstSLI GKGCMC 1 cut(s) 81
BstV1I GCAGC 1 cut(s) 379
BstX2I RGATCY 2 cut(s) 103, 333
BstYI RGATCY 2 cut(s) 103, 333
BtsCI GGATG 3 cut(s) 190, 199, 241
Cac8I GCNNGC 2 cut(s) 17, 372
CaiI CAGNNNCTG 1 cut(s) 281
Cfr13I GGNCC 2 cut(s) 188, 382
Csp6I GTAC 1 cut(s) 319
CviAII CATG 1 cut(s) 16
CviJI RGCY 1 cut(s) 149
CviKI_1 RGCY 1 cut(s) 149
CviQI GTAC 1 cut(s) 319
DdeI CTNAG 2 cut(s) 138, 282
DpnI GATC 3 cut(s) 105, 335, 452
DpnII GATC 3 cut(s) 103, 333, 450
Eam1104I CTCTTC 1 cut(s) 324
EarI CTCTTC 1 cut(s) 324
Eco24I GRGCYC 1 cut(s) 151
Eco47I GGWCC 2 cut(s) 188, 382
Eco57I CTGAAG 1 cut(s) 378
EcoNI CCTNNNNNAGG 1 cut(s) 59
EcoO109I RGGNCCY 1 cut(s) 382
EcoRI GAATTC 1 cut(s) 260
EcoT38I GRGCYC 1 cut(s) 151
FaeI CATG 1 cut(s) 19
FaiI YATR 6 cut(s) 17, 84, 153, 248, 348, 455
FaqI GGGAC 1 cut(s) 368
FatI CATG 1 cut(s) 15
FbaI TGATCA 1 cut(s) 450
Fnu4HI GCNGC 1 cut(s) 368
FokI GGATG 3 cut(s) 197, 206, 248
FriOI GRGCYC 1 cut(s) 151
Fsp4HI GCNGC 1 cut(s) 368
GluI GCNGC 1 cut(s) 368
HapII CCGG 2 cut(s) 191, 326
Hin1II CATG 1 cut(s) 19
HinfI GANTC 1 cut(s) 212
HpaII CCGG 2 cut(s) 191, 326
HphI GGTGA 2 cut(s) 76, 233
Hpy166II GTNNAC 3 cut(s) 79, 391, 466
Hpy188I TCNGA 2 cut(s) 259, 306
Hpy188III TCNNGA 2 cut(s) 191, 356
Hpy8I GTNNAC 3 cut(s) 79, 391, 466
HpyCH4V TGCA 4 cut(s) 26, 79, 92, 101
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
HpyF3I CTNAG 2 cut(s) 138, 282
Hsp92II CATG 1 cut(s) 19
KflI GGGWCCC 1 cut(s) 382
Kpn2I TCCGGA 1 cut(s) 190
KpnI GGTACC 1 cut(s) 322
Ksp22I TGATCA 1 cut(s) 450
Kzo9I GATC 3 cut(s) 103, 333, 450
LpnPI CCDG 9 cut(s) 12, 78, 204, 217, 339, 354, 369, 399, 410
Lsp1109I GCAGC 1 cut(s) 379
MaeIII GTNAC 4 cut(s) 31, 127, 221, 242
MalI GATC 3 cut(s) 105, 335, 452
MboI GATC 3 cut(s) 103, 333, 450
MboII GAAGA 2 cut(s) 328, 341
MflI RGATCY 2 cut(s) 103, 333
MhlI GDGCHC 2 cut(s) 81, 151
MluCI AATT 7 cut(s) 41, 87, 117, 166, 251, 260, 298
MlyI GAGTC 1 cut(s) 221
MnlI CCTC 4 cut(s) 117, 147, 168, 433
MroI TCCGGA 1 cut(s) 190
MseI TTAA 1 cut(s) 21
MspI CCGG 2 cut(s) 191, 326
MwoI GCNNNNNNNGC 1 cut(s) 98
NdeII GATC 3 cut(s) 103, 333, 450
NlaIII CATG 1 cut(s) 19
NlaIV GGNNCC 3 cut(s) 320, 383, 384
NmuCI GTSAC 3 cut(s) 127, 221, 242
NspI RCATGY 1 cut(s) 19
PaeI GCATGC 1 cut(s) 19
PflMI CCANNNNNTGG 1 cut(s) 347
PkrI GCNGC 1 cut(s) 369
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
PpuMI RGGWCCY 1 cut(s) 382
Psp5II RGGWCCY 1 cut(s) 382
PspN4I GGNNCC 3 cut(s) 320, 383, 384
PspPI GGNCC 2 cut(s) 188, 382
PspPPI RGGWCCY 1 cut(s) 382
PstNI CAGNNNCTG 1 cut(s) 281
PsuI RGATCY 2 cut(s) 103, 333
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 1 cut(s) 368
Sau3AI GATC 3 cut(s) 103, 333, 450
Sau96I GGNCC 2 cut(s) 188, 382
SchI GAGTC 1 cut(s) 221
SduI GDGCHC 2 cut(s) 81, 151
SetI ASST 2 cut(s) 66, 179
SfcI CTRYAG 1 cut(s) 422
SinI GGWCC 2 cut(s) 188, 382
SphI GCATGC 1 cut(s) 19
Sse9I AATT 7 cut(s) 41, 87, 117, 166, 251, 260, 298
SspI AATATT 1 cut(s) 401
TasI AATT 7 cut(s) 41, 87, 117, 166, 251, 260, 298
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TseFI GTSAC 3 cut(s) 127, 221, 242
TseI GCWGC 1 cut(s) 367
Tsp45I GTSAC 3 cut(s) 127, 221, 242
Van91I CCANNNNNTGG 1 cut(s) 347
VneI GTGCAC 1 cut(s) 77
VpaK11BI GGWCC 2 cut(s) 188, 382
XagI CCTNNNNNAGG 1 cut(s) 59
XapI RAATTY 2 cut(s) 251, 260
XceI RCATGY 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.