FvH4_2g35760
ERF Family

Phosphorylase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000829
Physical Location & Seq
Reverse (-)
26345114 .. 26347278
2165 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g35760.t1

Sequence Viewer

Length: 1089 bp
ATGGCAAGTAGTTCAGTATCAGTAGCAGGTTGGACTCTTCTATATGCTATCTTGGCTCTTATCACAACCCAACAACACTACTACTCGAATGCTGCCTTGTTGCCGGAGACGCTCAAGTTGATCGAGACGGCCAACGCCGATGGACCTTATCTAGGGTTGGTCATTCCAAACACTTACGAACTGAACCCTCTTCTTCGATCCCCAAACTTCACCTCAACTGACTTGATCATTGACTTTTCTGGAAGGAGATTCAGGTTTGGAACTATTGCTACGAAGAAGGTGATTCTGGTTATGACAGGACTGGGAATGGTTAATGCAGGAATAACCACACAGCTTTTGCTAAGCCTGTTCAGTGTAGAAGGAGTGGTGCATTACGGCACAGCTGGCAATGCCAATCCAACCTTCAACCTTGCAGATGTGGTCATTCCTCAGTATTGGTCCCATACTGCCCTTTGGACCTGGCAAAGATATGGACATGGGCCTGAAGATGAATTGCCTCTAAATTCAATGAGAGATATTGGGTGCTTGAACCTTGCAAGTTACACGGTGAATGTGACTGCTGGGAGCTCATATGATAACCTGTTGAACAATATTTGGTATCAGTCAGAGGAAGTTTTCCCCATTGATGGAACTCCAGAACAAAGAGAGTTTATCTTTTGGGTCCCTGTTGATCCCTTCTACTATGAAATCTCCAAAAATCTAGAGGACCTGAAATTAGAAGGTTGCCTAAACTCAACATCATGTTTGTCAAATACACCAAAAGTGGCAAGAGTCCAAAGGGGAACAAGTGCAAGCATTTACCTAGACAATGCTGCTTACCGTGACTTCATATACGATAAGTTCAACATAACTCTGGTGGACATGGAAAGTGCTTCCGTTGCTTTGATATGCCTTCAGCAAAGGGTTCCCTTCATAGCCATCAGAGCGCTGTCTGACTTGGCCGGCGGTGGCTCTGCGGATTCCAATGAGGCTGACACGTTCAATGCTCTTGCTTCCCATAATTCAGCCACAGTTGTTGTTGAGTTTATCAAACAGTTAGCAGCTGCTAGTTGTGCATCTAAGATGTGTCCTAGTGATGATGTTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNP_UDP_1

Protein Analysis

363

Amino Acids

39.71

Weight (kDa)

4.7

Isoelectric Point (pI)

37.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNP_UDP_1 PF01048 52 - 344 7.5e-32 Phosphorylase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 17
AciI CCGC 2 cut(s) 945, 956
AclWI GGATC 2 cut(s) 192, 665
AcoI YGGCCR 2 cut(s) 129, 939
AcsI RAATTY 1 cut(s) 502
AcuI CTGAAG 2 cut(s) 504, 878
AfeI AGCGCT 1 cut(s) 927
AfiI CCNNNNNNNGG 2 cut(s) 152, 626
AflIII ACRYGT 1 cut(s) 975
AgsI TTSAA 6 cut(s) 406, 507, 529, 586, 844, 982
AjnI CCWGG 1 cut(s) 458
AjuI GAANNNNNNNTTGG 2 cut(s) 386, 418
AluBI AGCT 4 cut(s) 334, 383, 567, 1043
AluI AGCT 4 cut(s) 334, 383, 567, 1043
Alw21I GWGCWC 1 cut(s) 569
Alw26I GTCTC 2 cut(s) 101, 119
AlwI GGATC 2 cut(s) 192, 665
Aor51HI AGCGCT 1 cut(s) 927
AoxI GGCC 3 cut(s) 129, 479, 939
ApeKI GCWGC 4 cut(s) 92, 812, 1040, 1043
ApoI RAATTY 1 cut(s) 502
AspLEI GCGC 1 cut(s) 928
AspS9I GGNCC 6 cut(s) 143, 438, 456, 479, 661, 706
AsuHPI GGTGA 3 cut(s) 202, 292, 559
AvaII GGWCC 5 cut(s) 143, 438, 456, 661, 706
BanII GRGCYC 1 cut(s) 569
Bbv12I GWGCWC 1 cut(s) 569
BbvI GCAGC 4 cut(s) 79, 799, 1030, 1052
BccI CCATC 3 cut(s) 134, 620, 926
BceAI ACGGC 2 cut(s) 144, 391
BciT130I CCWGG 1 cut(s) 460
BclI TGATCA 1 cut(s) 225
BcoDI GTCTC 2 cut(s) 101, 119
BfaI CTAG 6 cut(s) 152, 701, 803, 1047, 1071, 1087
BfoI RGCGCY 1 cut(s) 929
BfuAI ACCTGC 1 cut(s) 17
BisI GCNGC 4 cut(s) 93, 813, 1041, 1044
BlpI GCTNAGC 1 cut(s) 341
BlsI GCNGC 4 cut(s) 94, 814, 1042, 1045
Bme1390I CCNGG 1 cut(s) 460
Bme18I GGWCC 5 cut(s) 143, 438, 456, 661, 706
BmgT120I GGNCC 6 cut(s) 143, 438, 456, 479, 661, 706
BmiI GGNNCC 4 cut(s) 440, 662, 663, 906
BmrFI CCNGG 1 cut(s) 460
BmrI ACTGGG 1 cut(s) 311
BmsI GCATC 1 cut(s) 1064
BmuI ACTGGG 1 cut(s) 311
BpmI CTGGAG 1 cut(s) 618
Bpu1102I GCTNAGC 1 cut(s) 341
BpuEI CTTGAG 1 cut(s) 98
Bsc4I CCNNNNNNNGG 2 cut(s) 152, 626
Bse118I RCCGGY 1 cut(s) 941
Bse1I ACTGG 1 cut(s) 306
Bse3DI GCAATG 1 cut(s) 394
BseBI CCWGG 1 cut(s) 460
BseLI CCNNNNNNNGG 2 cut(s) 152, 626
BseMI GCAATG 1 cut(s) 394
BseMII CTCAG 1 cut(s) 443
BseNI ACTGG 1 cut(s) 306
BseXI GCAGC 4 cut(s) 79, 799, 1030, 1052
BseYI CCCAGC 1 cut(s) 560
BshFI GGCC 3 cut(s) 131, 481, 941
BsiHKAI GWGCWC 1 cut(s) 569
BsiSI CCGG 2 cut(s) 104, 942
BslFI GGGAC 2 cut(s) 424, 647
BslI CCNNNNNNNGG 2 cut(s) 152, 626
BsmAI GTCTC 2 cut(s) 101, 119
BsmBI CGTCTC 2 cut(s) 101, 119
BsmFI GGGAC 2 cut(s) 424, 647
BsmI GAATGC 1 cut(s) 94
BsnI GGCC 3 cut(s) 131, 481, 941
Bsp1286I GDGCHC 1 cut(s) 569
Bsp143I GATC 4 cut(s) 120, 197, 225, 670
Bsp1720I GCTNAGC 1 cut(s) 341
BspACI CCGC 2 cut(s) 945, 956
BspANI GGCC 3 cut(s) 131, 481, 941
BspCNI CTCAG 1 cut(s) 442
BspLI GGNNCC 4 cut(s) 440, 662, 663, 906
BspMI ACCTGC 1 cut(s) 17
BspPI GGATC 2 cut(s) 192, 665
BsrDI GCAATG 1 cut(s) 394
BsrFI RCCGGY 1 cut(s) 941
BsrI ACTGG 1 cut(s) 306
BssAI RCCGGY 1 cut(s) 941
BssMI GATC 4 cut(s) 120, 197, 225, 670
Bst2UI CCWGG 1 cut(s) 460
Bst4CI ACNGT 4 cut(s) 547, 821, 1012, 1035
Bst6I CTCTTC 2 cut(s) 42, 195
BstC8I GCNNGC 3 cut(s) 385, 793, 943
BstDEI CTNAG 3 cut(s) 341, 429, 1059
BstENI CCTNNNNNAGG 1 cut(s) 150
BstH2I RGCGCY 1 cut(s) 929
BstHHI GCGC 1 cut(s) 928
BstKTI GATC 4 cut(s) 123, 200, 228, 673
BstMAI GTCTC 2 cut(s) 101, 119
BstMBI GATC 4 cut(s) 120, 197, 225, 670
BstMWI GCNNNNNNNGC 7 cut(s) 53, 109, 384, 389, 878, 923, 1052
BstNI CCWGG 1 cut(s) 460
BstSCI CCNGG 1 cut(s) 458
BstV1I GCAGC 4 cut(s) 79, 799, 1030, 1052
BsuRI GGCC 3 cut(s) 131, 481, 941
BtsIMutI CAGTG 1 cut(s) 358
BveI ACCTGC 1 cut(s) 17
Cac8I GCNNGC 3 cut(s) 385, 793, 943
CfoI GCGC 1 cut(s) 928
Cfr10I RCCGGY 1 cut(s) 941
Cfr13I GGNCC 6 cut(s) 143, 438, 456, 479, 661, 706
CseI GACGC 1 cut(s) 118
CspCI CAANNNNNGTGG 2 cut(s) 997, 1032
CviAII CATG 3 cut(s) 476, 741, 862
DdeI CTNAG 3 cut(s) 341, 429, 1059
DpnI GATC 4 cut(s) 122, 199, 227, 672
DpnII GATC 4 cut(s) 120, 197, 225, 670
EaeI YGGCCR 2 cut(s) 129, 939
Eam1104I CTCTTC 2 cut(s) 42, 195
EarI CTCTTC 2 cut(s) 42, 195
Ecl136II GAGCTC 1 cut(s) 567
Eco24I GRGCYC 1 cut(s) 569
Eco47I GGWCC 5 cut(s) 143, 438, 456, 661, 706
Eco47III AGCGCT 1 cut(s) 927
Eco53kI GAGCTC 1 cut(s) 567
Eco57I CTGAAG 2 cut(s) 504, 878
EcoICRI GAGCTC 1 cut(s) 567
EcoNI CCTNNNNNAGG 1 cut(s) 150
EcoO109I RGGNCCY 2 cut(s) 661, 706
EcoRII CCWGG 1 cut(s) 458
EcoT38I GRGCYC 1 cut(s) 569
Esp3I CGTCTC 2 cut(s) 101, 119
FaeI CATG 3 cut(s) 479, 744, 865
FaqI GGGAC 2 cut(s) 424, 647
FatI CATG 3 cut(s) 475, 740, 861
FauNDI CATATG 1 cut(s) 571
FbaI TGATCA 1 cut(s) 225
Fnu4HI GCNGC 4 cut(s) 93, 813, 1041, 1044
FriOI GRGCYC 1 cut(s) 569
Fsp4HI GCNGC 4 cut(s) 93, 813, 1041, 1044
FspBI CTAG 6 cut(s) 152, 701, 803, 1047, 1071, 1087
GlaI GCGC 1 cut(s) 927
GluI GCNGC 4 cut(s) 93, 813, 1041, 1044
GsaI CCCAGC 1 cut(s) 564
GsuI CTGGAG 1 cut(s) 618
HaeII RGCGCY 1 cut(s) 929
HaeIII GGCC 3 cut(s) 131, 481, 941
HapII CCGG 2 cut(s) 104, 942
HgaI GACGC 1 cut(s) 118
HhaI GCGC 1 cut(s) 928
Hin1II CATG 3 cut(s) 479, 744, 865
Hin6I GCGC 1 cut(s) 926
HinP1I GCGC 1 cut(s) 926
HinfI GANTC 5 cut(s) 34, 249, 283, 771, 959
HpaII CCGG 2 cut(s) 104, 942
HphI GGTGA 3 cut(s) 202, 292, 559
Hpy166II GTNNAC 2 cut(s) 859, 1084
Hpy188I TCNGA 3 cut(s) 607, 923, 934
Hpy188III TCNNGA 4 cut(s) 124, 240, 635, 701
Hpy8I GTNNAC 2 cut(s) 859, 1084
HpyAV CCTTC 8 cut(s) 237, 271, 353, 412, 685, 713, 902, 919
HpyCH4III ACNGT 4 cut(s) 547, 821, 1012, 1035
HpyCH4IV ACGT 1 cut(s) 977
HpyCH4V TGCA 6 cut(s) 317, 370, 413, 536, 791, 1055
HpyF10VI GCNNNNNNNGC 7 cut(s) 53, 109, 384, 389, 878, 923, 1052
HpyF3I CTNAG 3 cut(s) 341, 429, 1059
HpySE526I ACGT 1 cut(s) 977
Hsp92II CATG 3 cut(s) 479, 744, 865
HspAI GCGC 1 cut(s) 926
KflI GGGWCCC 1 cut(s) 661
KroI GCCGGC 1 cut(s) 941
KroNI GCCGGC 1 cut(s) 943
Ksp22I TGATCA 1 cut(s) 225
Kzo9I GATC 4 cut(s) 120, 197, 225, 670
LmnI GCTCC 1 cut(s) 564
Lsp1109I GCAGC 4 cut(s) 79, 799, 1030, 1052
LweI GCATC 1 cut(s) 1064
MaeI CTAG 6 cut(s) 152, 701, 803, 1047, 1071, 1087
MaeII ACGT 1 cut(s) 977
MaeIII GTNAC 3 cut(s) 539, 553, 821
MalI GATC 4 cut(s) 122, 199, 227, 672
MboI GATC 4 cut(s) 120, 197, 225, 670
MboII GAAGA 5 cut(s) 29, 182, 185, 286, 497
MhlI GDGCHC 1 cut(s) 569
MluCI AATT 4 cut(s) 491, 502, 713, 1000
MlyI GAGTC 2 cut(s) 28, 780
MmeI TCCRAC 2 cut(s) 11, 422
MnlI CCTC 7 cut(s) 198, 223, 438, 507, 601, 697, 961
MroNI GCCGGC 1 cut(s) 941
MseI TTAA 1 cut(s) 312
MspA1I CMGCKG 2 cut(s) 383, 1043
MspI CCGG 2 cut(s) 104, 942
MspR9I CCNGG 1 cut(s) 460
Mva1269I GAATGC 1 cut(s) 94
MvaI CCWGG 1 cut(s) 460
MwoI GCNNNNNNNGC 7 cut(s) 53, 109, 384, 389, 878, 923, 1052
NaeI GCCGGC 1 cut(s) 943
NdeI CATATG 1 cut(s) 571
NdeII GATC 4 cut(s) 120, 197, 225, 670
NgoMIV GCCGGC 1 cut(s) 941
NlaIII CATG 3 cut(s) 479, 744, 865
NlaIV GGNNCC 4 cut(s) 440, 662, 663, 906
NmuCI GTSAC 2 cut(s) 553, 821
PctI GAATGC 1 cut(s) 94
PdiI GCCGGC 1 cut(s) 943
PfeI GAWTC 3 cut(s) 249, 283, 959
PkrI GCNGC 4 cut(s) 94, 814, 1042, 1045
PleI GAGTC 2 cut(s) 28, 779
PpsI GAGTC 2 cut(s) 28, 779
PpuMI RGGWCCY 2 cut(s) 661, 706
Psp124BI GAGCTC 1 cut(s) 569
Psp5II RGGWCCY 2 cut(s) 661, 706
Psp6I CCWGG 1 cut(s) 458
PspFI CCCAGC 1 cut(s) 560
PspGI CCWGG 1 cut(s) 458
PspN4I GGNNCC 4 cut(s) 440, 662, 663, 906
PspPI GGNCC 6 cut(s) 143, 438, 456, 479, 661, 706
PspPPI RGGWCCY 2 cut(s) 661, 706
PsrI GAACNNNNNNTAC 2 cut(s) 253, 285
PvuII CAGCTG 2 cut(s) 383, 1043
SacI GAGCTC 1 cut(s) 569
SaqAI TTAA 1 cut(s) 312
SatI GCNGC 4 cut(s) 93, 813, 1041, 1044
Sau3AI GATC 4 cut(s) 120, 197, 225, 670
Sau96I GGNCC 6 cut(s) 143, 438, 456, 479, 661, 706
SchI GAGTC 2 cut(s) 28, 780
ScrFI CCNGG 1 cut(s) 460
SduI GDGCHC 1 cut(s) 569
SfaNI GCATC 1 cut(s) 1064
SinI GGWCC 5 cut(s) 143, 438, 456, 661, 706
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
Sse9I AATT 4 cut(s) 491, 502, 713, 1000
SsiI CCGC 2 cut(s) 945, 956
SspI AATATT 1 cut(s) 592
SspMI CTAG 6 cut(s) 152, 701, 803, 1047, 1071, 1087
SstI GAGCTC 1 cut(s) 569
StyD4I CCNGG 1 cut(s) 458
TaaI ACNGT 4 cut(s) 547, 821, 1012, 1035
TaiI ACGT 1 cut(s) 980
TaqI TCGA 3 cut(s) 86, 123, 196
TasI AATT 4 cut(s) 491, 502, 713, 1000
TfiI GAWTC 3 cut(s) 249, 283, 959
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TscAI CASTG 1 cut(s) 358
TseFI GTSAC 2 cut(s) 553, 821
TseI GCWGC 4 cut(s) 92, 812, 1040, 1043
Tsp45I GTSAC 2 cut(s) 553, 821
TspDTI ATGAA 4 cut(s) 504, 699, 817, 901
TspGWI ACGGA 1 cut(s) 865
TspRI CASTG 1 cut(s) 358
VpaK11BI GGWCC 5 cut(s) 143, 438, 456, 661, 706
XagI CCTNNNNNAGG 1 cut(s) 150
XapI RAATTY 1 cut(s) 502
XbaI TCTAGA 1 cut(s) 700
XspI CTAG 6 cut(s) 152, 701, 803, 1047, 1071, 1087
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.