FvH4_2g35750
ERF Family

Phosphorylase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000829
Physical Location & Seq
Reverse (-)
26343516 .. 26344358
843 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g35750.t1

Sequence Viewer

Length: 498 bp
ATGACAGAACTGTCCATGATCAATGCAGGTATAACTACTCAGCTTTTGTTAAGCTTGTTTGATATAGAAGGAGTCGTGCATTATGGCATACCTGGCAATGCAAACCCATCCTTTAACATTGCAGATGTGCTCATTCCTCAGTATTGGTCCCATATTGCTCTTTGGAATTGGCAGATATATGGAAATGGGCCTCAAGATGAACTATCCCTTGAATCACAAGGAGACTACACAAGAAACATTGGCTACTTCAAGTTTTCAAATTATACAGTGAATGTGACAGGTTGCAGCTCATTTGACAATCTGTTAAACAACATTTGGTTTCAACCTGAAGAAGTCTTCCCCATTGATGGAACTCCAGAACAAAGACAACATGCCTTCTGGATTGCTGTCAATCCCTTCTACTATGAAATCTCCAAAAAGCTTGAGTTAACCATCCTGCTTAGTATATATGATCCAAAATTTATGGCTATATATAGTTACGCACATACATGTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNP_UDP_1

Protein Analysis

166

Amino Acids

18.98

Weight (kDa)

4.51

Isoelectric Point (pI)

44.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 10
Acc36I ACCTGC 1 cut(s) 17
AclWI GGATC 1 cut(s) 446
AcsI RAATTY 1 cut(s) 458
AcuI CTGAAG 1 cut(s) 348
AfiI CCNNNNNNNGG 1 cut(s) 347
AflIII ACRYGT 1 cut(s) 488
AgsI TTSAA 4 cut(s) 212, 250, 258, 323
AjnI CCWGG 1 cut(s) 91
AluBI AGCT 4 cut(s) 43, 54, 288, 421
AluI AGCT 4 cut(s) 43, 54, 288, 421
Alw21I GWGCWC 1 cut(s) 132
Alw26I GTCTC 1 cut(s) 216
AlwI GGATC 1 cut(s) 446
AoxI GGCC 1 cut(s) 188
ApeKI GCWGC 1 cut(s) 285
ApoI RAATTY 1 cut(s) 458
AspS9I GGNCC 2 cut(s) 147, 188
AvaII GGWCC 1 cut(s) 147
BbsI GAAGAC 1 cut(s) 328
Bbv12I GWGCWC 1 cut(s) 132
BbvI GCAGC 1 cut(s) 297
BccI CCATC 3 cut(s) 115, 341, 440
BciT130I CCWGG 1 cut(s) 93
BclI TGATCA 1 cut(s) 18
BcoDI GTCTC 1 cut(s) 216
BfuAI ACCTGC 1 cut(s) 17
BisI GCNGC 1 cut(s) 286
BlsI GCNGC 1 cut(s) 287
Bme1390I CCNGG 1 cut(s) 93
Bme18I GGWCC 1 cut(s) 147
BmgT120I GGNCC 2 cut(s) 147, 188
BmiI GGNNCC 1 cut(s) 149
BmrFI CCNGG 1 cut(s) 93
BpiI GAAGAC 1 cut(s) 328
BpmI CTGGAG 1 cut(s) 339
BpuEI CTTGAG 2 cut(s) 177, 443
Bsc4I CCNNNNNNNGG 1 cut(s) 347
Bse3DI GCAATG 2 cut(s) 103, 117
BseBI CCWGG 1 cut(s) 93
BseGI GGATG 2 cut(s) 107, 432
BseLI CCNNNNNNNGG 1 cut(s) 347
BseMI GCAATG 2 cut(s) 103, 117
BseMII CTCAG 2 cut(s) 53, 152
BseXI GCAGC 1 cut(s) 297
BshFI GGCC 1 cut(s) 190
BsiHKAI GWGCWC 1 cut(s) 132
BslFI GGGAC 1 cut(s) 133
BslI CCNNNNNNNGG 1 cut(s) 347
BsmAI GTCTC 1 cut(s) 216
BsmFI GGGAC 1 cut(s) 133
BsnI GGCC 1 cut(s) 190
Bsp1286I GDGCHC 1 cut(s) 132
Bsp143I GATC 2 cut(s) 18, 451
BspANI GGCC 1 cut(s) 190
BspCNI CTCAG 2 cut(s) 52, 151
BspLI GGNNCC 1 cut(s) 149
BspMI ACCTGC 1 cut(s) 17
BspPI GGATC 1 cut(s) 446
BsrDI GCAATG 2 cut(s) 103, 117
BssMI GATC 2 cut(s) 18, 451
Bst2UI CCWGG 1 cut(s) 93
Bst4CI ACNGT 2 cut(s) 12, 268
BstDEI CTNAG 3 cut(s) 39, 138, 440
BstF5I GGATG 2 cut(s) 107, 432
BstKTI GATC 2 cut(s) 21, 454
BstMAI GTCTC 1 cut(s) 216
BstMBI GATC 2 cut(s) 18, 451
BstMWI GCNNNNNNNGC 1 cut(s) 93
BstNI CCWGG 1 cut(s) 93
BstNSI RCATGY 2 cut(s) 374, 492
BstSCI CCNGG 1 cut(s) 91
BstV1I GCAGC 1 cut(s) 297
BstV2I GAAGAC 1 cut(s) 328
BsuRI GGCC 1 cut(s) 190
BtsCI GGATG 2 cut(s) 107, 432
BtsIMutI CAGTG 1 cut(s) 273
BveI ACCTGC 1 cut(s) 17
Cfr13I GGNCC 2 cut(s) 147, 188
CviAII CATG 3 cut(s) 16, 371, 489
CviJI RGCY 7 cut(s) 43, 54, 190, 243, 288, 421, 467
CviKI_1 RGCY 7 cut(s) 43, 54, 190, 243, 288, 421, 467
DdeI CTNAG 3 cut(s) 39, 138, 440
DpnI GATC 2 cut(s) 20, 453
DpnII GATC 2 cut(s) 18, 451
DrdI GACNNNNNNGTC 1 cut(s) 10
DseDI GACNNNNNNGTC 1 cut(s) 10
Eco47I GGWCC 1 cut(s) 147
Eco57I CTGAAG 1 cut(s) 348
EcoRII CCWGG 1 cut(s) 91
FaeI CATG 3 cut(s) 19, 374, 492
FaqI GGGAC 1 cut(s) 133
FatI CATG 3 cut(s) 15, 370, 488
FbaI TGATCA 1 cut(s) 18
Fnu4HI GCNGC 1 cut(s) 286
FokI GGATG 2 cut(s) 94, 419
Fsp4HI GCNGC 1 cut(s) 286
GluI GCNGC 1 cut(s) 286
GsuI CTGGAG 1 cut(s) 339
HaeIII GGCC 1 cut(s) 190
Hin1II CATG 3 cut(s) 19, 374, 492
HincII GTYRAC 1 cut(s) 429
HindII GTYRAC 1 cut(s) 429
HindIII AAGCTT 2 cut(s) 52, 419
HinfI GANTC 2 cut(s) 72, 212
HpaI GTTAAC 1 cut(s) 429
Hpy166II GTNNAC 1 cut(s) 429
Hpy188III TCNNGA 3 cut(s) 194, 356, 379
Hpy8I GTNNAC 1 cut(s) 429
HpyAV CCTTC 3 cut(s) 62, 385, 406
HpyCH4III ACNGT 2 cut(s) 12, 268
HpyCH4V TGCA 5 cut(s) 26, 79, 101, 122, 285
HpyF10VI GCNNNNNNNGC 1 cut(s) 93
HpyF3I CTNAG 3 cut(s) 39, 138, 440
Hsp92II CATG 3 cut(s) 19, 374, 492
Ksp22I TGATCA 1 cut(s) 18
KspAI GTTAAC 1 cut(s) 429
Kzo9I GATC 2 cut(s) 18, 451
LpnPI CCDG 8 cut(s) 12, 78, 105, 264, 339, 364, 369, 449
Lsp1109I GCAGC 1 cut(s) 297
MaeIII GTNAC 2 cut(s) 274, 476
MalI GATC 2 cut(s) 20, 453
MboI GATC 2 cut(s) 18, 451
MboII GAAGA 2 cut(s) 328, 341
MhlI GDGCHC 1 cut(s) 132
MluCI AATT 3 cut(s) 166, 259, 458
MlyI GAGTC 1 cut(s) 81
MnlI CCTC 2 cut(s) 147, 201
MseI TTAA 4 cut(s) 50, 114, 305, 428
MslI CAYNNNNRTG 1 cut(s) 487
MspR9I CCNGG 1 cut(s) 93
MvaI CCWGG 1 cut(s) 93
MwoI GCNNNNNNNGC 1 cut(s) 93
NdeII GATC 2 cut(s) 18, 451
NlaIII CATG 3 cut(s) 19, 374, 492
NlaIV GGNNCC 1 cut(s) 149
NmuCI GTSAC 1 cut(s) 274
NspI RCATGY 2 cut(s) 374, 492
PciI ACATGT 1 cut(s) 488
PfeI GAWTC 1 cut(s) 212
PkrI GCNGC 1 cut(s) 287
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
PscI ACATGT 1 cut(s) 488
Psp6I CCWGG 1 cut(s) 91
PspGI CCWGG 1 cut(s) 91
PspN4I GGNNCC 1 cut(s) 149
PspPI GGNCC 2 cut(s) 147, 188
RseI CAYNNNNRTG 1 cut(s) 487
SaqAI TTAA 4 cut(s) 50, 114, 305, 428
SatI GCNGC 1 cut(s) 286
Sau3AI GATC 2 cut(s) 18, 451
Sau96I GGNCC 2 cut(s) 147, 188
SchI GAGTC 1 cut(s) 81
ScrFI CCNGG 1 cut(s) 93
SduI GDGCHC 1 cut(s) 132
SetI ASST 8 cut(s) 31, 45, 56, 94, 283, 290, 328, 423
SinI GGWCC 1 cut(s) 147
SmiMI CAYNNNNRTG 1 cut(s) 487
SmlI CTYRAG 2 cut(s) 192, 422
SmoI CTYRAG 2 cut(s) 192, 422
Sse9I AATT 3 cut(s) 166, 259, 458
StyD4I CCNGG 1 cut(s) 91
TaaI ACNGT 2 cut(s) 12, 268
TasI AATT 3 cut(s) 166, 259, 458
TfiI GAWTC 1 cut(s) 212
Tru1I TTAA 4 cut(s) 50, 114, 305, 428
Tru9I TTAA 4 cut(s) 50, 114, 305, 428
TscAI CASTG 1 cut(s) 273
TseFI GTSAC 1 cut(s) 274
TseI GCWGC 1 cut(s) 285
Tsp45I GTSAC 1 cut(s) 274
TspDTI ATGAA 2 cut(s) 213, 420
TspRI CASTG 1 cut(s) 273
VpaK11BI GGWCC 1 cut(s) 147
XapI RAATTY 1 cut(s) 458
XceI RCATGY 2 cut(s) 374, 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.