Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000829

Physical Location & Seq

Genomic Coordinates Reverse (-)

37947287 .. 37950562

Gene Structure 3276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G450200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGGTGGTTCAGAAGTAGCTTGGCCTTGCATAGTTGTTTATGCTATGATGATGATCAGTTTGATGCTTAACACACAGCAGATACATGGTGCATTGCCGGCGAACACACAAAAGCTGATCGACGAGGCCAACAAGCGTGGCCCTTATCTAGGCTTGGTCATTCCAAATTCTTTTGAAATGAACCCTCTTCTTCAGTCTCCGCACTTCACCTCAACTGACTTGATCATAGATTTTTCCGGAAGGAGATTTCGATTTGGAACCATTGCTAACAAGAAAGTCATATTAGTTATGACAGGACTGTCATTGATTAATGCAGGCATAACCACTCAGCTTTTGTTAACCCTATTCAATATAGAAGGAGTGGTGCATTATGGCATAGCTGGCAATGCAAACCCATCTCTCAACATTGCAGATGTTGCCATTCCTCATTATTGGGCCCACACTGCTCTTTGGAACTGGCAGAGATATGGGCAAGGGCCTGAAGATGAGCTACCTCTTGAAGCAAATGGAGACTACACAAGAAAAATAGGGTACATAAACGTTGCAAATTACACAGTGAATGTGACAGATGGCAGCTCATATGGCAACCTGTTGAACAACATTTGGTTTCAACCAGAGGAAGTCTTCCCCATAGATGGAACTCCAGAAGAAAGACAGCATGCCTTTTGGGTTGCTGTTGATCCCCACTACTATGAAATCTCCCAAAAAGTAGAGGACGTGAAATTGGAAGGCTGCCTCAACTCAACAACATGTTTGTCCAATATACCAAAAGTGGCAAGAGTCCAAAGGGGAGCAAGTGCAAGCATTTACCTAGACAATGCTGCTTATCGTGGCTTCCTATATAACAAATTCAACATAAGCCCTGTGGACATGGAGACTGCTTCTGTTGCCTTGATATGTCTCCAACAAAGGGTTCCCTTCATAGCCATCAGGGCGATCTCTGACTTGGCCGGCGGTGGCTCTGCTGACTCGAATGAGGCGGACATGTTCACCCCTCTCGCTGCCAAGAACTCGGTTACAGTTGTTGTGGAATTTATCAAACAGTTATCAGCTGCTGCTACCATCTCTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNP_UDP_1

Protein Analysis

358

Amino Acids

39.19

Weight (kDa)

5.26

Isoelectric Point (pI)

36.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28940 AT4G28940
fragaria_vesca	FvH4_1g05530 FvH4_2g35741 FvH4_2g35750 FvH4_2g35760 FvH4_2g35761 FvH4_2g35762
malus_domestica	MD15G1095100.v1.1 MD15G1095200.v1.1 MD15G1095300.v1.1 MD15G1191300.v1.1
prunus_persica	Prupe.1G450100_v2.0.a1 Prupe.1G450200_v2.0.a1 Prupe.7G225900_v2.0.a1 Prupe.7G225900_v2.0.a1 Prupe.7G225900_v2.0.a1
pyrus_communis	pycom15g08760 pycom15g08770 pycom15g17130
rosa_chinensis	RchiOBHm_Chr1g0336711 RchiOBHm_Chr2g0091231 RchiOBHm_Chr6g0259261 RchiOBHm_Chr6g0259271 RchiOBHm_Chr6g0306011 RchiOBHm_Chr6g0306021
rosa_laevigata	RLG00000010830 RLG00000010831 RLG00000010832 RLG00000014544 RLG00000016193 RLG00000029340
rosa_multiflora	Rmu_sc0002270.1_g000016 Rmu_sc0011974.1_g000004 Rmu_sc0020534.1_g000001 Rmu_sc0035114.1_g000001 Rmu_sc0036553.1_g000001 Rmu_ssc0000050.1_g000090
rosa_roxburghii	Rroxscaffold_2G00150370 Rroxscaffold_7G00162110 Rroxscaffold_7G00162130
rosa_rugosa	Rorug02G0014600 Rorug06G0346400 Rorug06G0346600
rosa_samantha	Rh2AG060400 Rh2BG059100 Rh2CG060900 Rh2DG059700 Rh6AG103200 Rh6AG458200 Rh6AG458400 Rh6BG095600 Rh6BG442400 Rh6BG442500 Rh6BG442600 Rh6BG442700 Rh6CG092500 Rh6CG472700 Rh6CG472800 Rh6CG472900 Rh6DG086500 Rh6DG458800 Rh6DG459000 Rh6DG459100
rosa_wichuraiana	Rw2G004950 Rw6G008910 Rw6G039960 Rw6G039970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	298
AccIII	TCCGGA	1 cut(s)	236
AciI	CCGC	3 cut(s)	200, 954, 980
AclI	AACGTT	1 cut(s)	540
AclWI	GGATC	1 cut(s)	674
AcoI	YGGCCR	1 cut(s)	948
AcsI	RAATTY	3 cut(s)	166, 848, 1031
AcuI	CTGAAG	2 cut(s)	176, 501
AfaI	GTAC	1 cut(s)	533
AfiI	CCNNNNNNNGG	3 cut(s)	149, 635, 910
AflIII	ACRYGT	2 cut(s)	749, 984
AgsI	TTSAA	6 cut(s)	176, 349, 500, 595, 611, 853
AjiI	CACGTC	1 cut(s)	718
AjuI	GAANNNNNNNTTGG	2 cut(s)	897, 929
AluBI	AGCT	7 cut(s)	20, 115, 331, 380, 490, 576, 1052
AluI	AGCT	7 cut(s)	20, 115, 331, 380, 490, 576, 1052
Alw26I	GTCTC	4 cut(s)	201, 504, 869, 905
AlwI	GGATC	1 cut(s)	674
AlwNI	CAGNNNCTG	1 cut(s)	1055
Aor13HI	TCCGGA	1 cut(s)	236
AoxI	GGCC	6 cut(s)	23, 126, 139, 435, 476, 948
ApaI	GGGCCC	1 cut(s)	439
ApeKI	GCWGC	6 cut(s)	573, 732, 821, 1001, 1052, 1055
ApoI	RAATTY	3 cut(s)	166, 848, 1031
AseI	ATTAAT	1 cut(s)	309
AspS9I	GGNCC	4 cut(s)	140, 435, 436, 476
AsuHPI	GGTGA	2 cut(s)	199, 982
BaeGI	GKGCMC	1 cut(s)	439
BanII	GRGCYC	1 cut(s)	439
BarI	GAAGNNNNNNTAC	2 cut(s)	474, 506
BbsI	GAAGAC	1 cut(s)	616
BbvI	GCAGC	6 cut(s)	585, 719, 808, 988, 1039, 1042
BccI	CCATC	5 cut(s)	403, 563, 629, 935, 1070
BclI	TGATCA	2 cut(s)	54, 222
BcoDI	GTCTC	4 cut(s)	201, 504, 869, 905
BfaI	CTAG	2 cut(s)	149, 812
BglI	GCCNNNNNGGC	1 cut(s)	932
BisI	GCNGC	6 cut(s)	574, 733, 822, 1002, 1053, 1056
BlsI	GCNGC	6 cut(s)	575, 734, 823, 1003, 1054, 1057
BmgBI	CACGTC	1 cut(s)	718
BmgT120I	GGNCC	4 cut(s)	140, 435, 436, 476
BmiI	GGNNCC	3 cut(s)	259, 437, 915
BmsI	GCATC	1 cut(s)	54
BpiI	GAAGAC	1 cut(s)	616
BpmI	CTGGAG	1 cut(s)	627
BsaBI	GATNNNNATC	1 cut(s)	53
BsaWI	WCCGGW	1 cut(s)	236
Bsc4I	CCNNNNNNNGG	3 cut(s)	149, 635, 910
Bse118I	RCCGGY	2 cut(s)	97, 950
Bse1I	ACTGG	1 cut(s)	461
Bse3DI	GCAATG	4 cut(s)	92, 261, 391, 405
Bse8I	GATNNNNATC	1 cut(s)	53
BseAI	TCCGGA	1 cut(s)	236
BseJI	GATNNNNATC	1 cut(s)	53
BseLI	CCNNNNNNNGG	3 cut(s)	149, 635, 910
BseMI	GCAATG	4 cut(s)	92, 261, 391, 405
BseMII	CTCAG	1 cut(s)	341
BseNI	ACTGG	1 cut(s)	461
BseSI	GKGCMC	1 cut(s)	439
BseXI	GCAGC	6 cut(s)	585, 719, 808, 988, 1039, 1042
BshFI	GGCC	6 cut(s)	25, 128, 141, 437, 478, 950
BsiSI	CCGG	3 cut(s)	98, 237, 951
BslI	CCNNNNNNNGG	3 cut(s)	149, 635, 910
BsmAI	GTCTC	4 cut(s)	201, 504, 869, 905
BsnI	GGCC	6 cut(s)	25, 128, 141, 437, 478, 950
Bsp120I	GGGCCC	1 cut(s)	435
Bsp1286I	GDGCHC	1 cut(s)	439
Bsp13I	TCCGGA	1 cut(s)	236
Bsp143I	GATC	5 cut(s)	54, 117, 222, 679, 936
BspACI	CCGC	3 cut(s)	200, 954, 980
BspANI	GGCC	6 cut(s)	25, 128, 141, 437, 478, 950
BspCNI	CTCAG	1 cut(s)	340
BspEI	TCCGGA	1 cut(s)	236
BspLI	GGNNCC	3 cut(s)	259, 437, 915
BspPI	GGATC	1 cut(s)	674
BsrDI	GCAATG	4 cut(s)	92, 261, 391, 405
BsrFI	RCCGGY	2 cut(s)	97, 950
BsrI	ACTGG	1 cut(s)	461
BssAI	RCCGGY	2 cut(s)	97, 950
BssMI	GATC	5 cut(s)	54, 117, 222, 679, 936
Bst4CI	ACNGT	4 cut(s)	300, 556, 1021, 1044
Bst6I	CTCTTC	1 cut(s)	192
BstAPI	GCANNNNNTGC	1 cut(s)	416
BstC8I	GCNNGC	6 cut(s)	99, 316, 382, 660, 802, 952
BstDEI	CTNAG	1 cut(s)	327
BstENI	CCTNNNNNAGG	1 cut(s)	147
BstKTI	GATC	5 cut(s)	57, 120, 225, 682, 939
BstMAI	GTCTC	4 cut(s)	201, 504, 869, 905
BstMBI	GATC	5 cut(s)	54, 117, 222, 679, 936
BstMWI	GCNNNNNNNGC	8 cut(s)	98, 381, 386, 416, 443, 582, 887, 932
BstNSI	RCATGY	3 cut(s)	662, 753, 988
BstSLI	GKGCMC	1 cut(s)	439
BstV1I	GCAGC	6 cut(s)	585, 719, 808, 988, 1039, 1042
BstV2I	GAAGAC	1 cut(s)	616
BsuRI	GGCC	6 cut(s)	25, 128, 141, 437, 478, 950
BtrI	CACGTC	1 cut(s)	718
BtsI	GCAGTG	1 cut(s)	441
BtsIMutI	CAGTG	2 cut(s)	441, 561
Cac8I	GCNNGC	6 cut(s)	99, 316, 382, 660, 802, 952
CaiI	CAGNNNCTG	1 cut(s)	1055
Cfr10I	RCCGGY	2 cut(s)	97, 950
Cfr13I	GGNCC	4 cut(s)	140, 435, 436, 476
Csp6I	GTAC	1 cut(s)	532
CspCI	CAANNNNNGTGG	2 cut(s)	118, 153
CviAII	CATG	5 cut(s)	86, 659, 750, 871, 985
CviQI	GTAC	1 cut(s)	532
DdeI	CTNAG	1 cut(s)	327
DpnI	GATC	5 cut(s)	56, 119, 224, 681, 938
DpnII	GATC	5 cut(s)	54, 117, 222, 679, 936
DrdI	GACNNNNNNGTC	1 cut(s)	298
DseDI	GACNNNNNNGTC	1 cut(s)	298
EaeI	YGGCCR	1 cut(s)	948
Eam1104I	CTCTTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	192
EciI	GGCGGA	1 cut(s)	995
Eco24I	GRGCYC	1 cut(s)	439
Eco57I	CTGAAG	2 cut(s)	176, 501
EcoNI	CCTNNNNNAGG	1 cut(s)	147
EcoO109I	RGGNCCY	1 cut(s)	476
EcoT38I	GRGCYC	1 cut(s)	439
FaeI	CATG	5 cut(s)	89, 662, 753, 874, 988
FatI	CATG	5 cut(s)	85, 658, 749, 870, 984
FauNDI	CATATG	1 cut(s)	580
FbaI	TGATCA	2 cut(s)	54, 222
Fnu4HI	GCNGC	6 cut(s)	574, 733, 822, 1002, 1053, 1056
FriOI	GRGCYC	1 cut(s)	439
Fsp4HI	GCNGC	6 cut(s)	574, 733, 822, 1002, 1053, 1056
FspBI	CTAG	2 cut(s)	149, 812
GluI	GCNGC	6 cut(s)	574, 733, 822, 1002, 1053, 1056
GsuI	CTGGAG	1 cut(s)	627
HaeIII	GGCC	6 cut(s)	25, 128, 141, 437, 478, 950
HapII	CCGG	3 cut(s)	98, 237, 951
Hin1II	CATG	5 cut(s)	89, 662, 753, 874, 988
HincII	GTYRAC	1 cut(s)	339
HindII	GTYRAC	1 cut(s)	339
HinfI	GANTC	2 cut(s)	780, 968
HpaI	GTTAAC	1 cut(s)	339
HpaII	CCGG	3 cut(s)	98, 237, 951
HphI	GGTGA	2 cut(s)	199, 982
Hpy166II	GTNNAC	3 cut(s)	339, 868, 990
Hpy188I	TCNGA	2 cut(s)	13, 943
Hpy188III	TCNNGA	3 cut(s)	237, 497, 644
Hpy8I	GTNNAC	3 cut(s)	339, 868, 990
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	4 cut(s)	234, 350, 722, 928
HpyCH4III	ACNGT	4 cut(s)	300, 556, 1021, 1044
HpyCH4IV	ACGT	2 cut(s)	540, 717
HpyCH4V	TGCA	8 cut(s)	30, 92, 314, 367, 389, 410, 545, 800
HpyF10VI	GCNNNNNNNGC	8 cut(s)	98, 381, 386, 416, 443, 582, 887, 932
HpyF3I	CTNAG	1 cut(s)	327
HpySE526I	ACGT	2 cut(s)	540, 717
Hsp92II	CATG	5 cut(s)	89, 662, 753, 874, 988
Kpn2I	TCCGGA	1 cut(s)	236
KroI	GCCGGC	2 cut(s)	97, 950
KroNI	GCCGGC	2 cut(s)	99, 952
Ksp22I	TGATCA	2 cut(s)	54, 222
KspAI	GTTAAC	1 cut(s)	339
Kzo9I	GATC	5 cut(s)	54, 117, 222, 679, 936
LmnI	GCTCC	1 cut(s)	791
Lsp1109I	GCAGC	6 cut(s)	585, 719, 808, 988, 1039, 1042
LweI	GCATC	1 cut(s)	54
MaeI	CTAG	2 cut(s)	149, 812
MaeII	ACGT	2 cut(s)	540, 717
MaeIII	GTNAC	2 cut(s)	562, 1015
MalI	GATC	5 cut(s)	56, 119, 224, 681, 938
MboI	GATC	5 cut(s)	54, 117, 222, 679, 936
MboII	GAAGA	5 cut(s)	179, 182, 494, 616, 659
MhlI	GDGCHC	1 cut(s)	439
MluCI	AATT	5 cut(s)	166, 547, 722, 848, 1031
MlyI	GAGTC	2 cut(s)	789, 962
MmeI	TCCRAC	1 cut(s)	928
MroI	TCCGGA	1 cut(s)	236
MroNI	GCCGGC	2 cut(s)	97, 950
MseI	TTAA	4 cut(s)	69, 309, 338, 1072
MslI	CAYNNNNRTG	1 cut(s)	690
MspA1I	CMGCKG	1 cut(s)	1052
MspI	CCGG	3 cut(s)	98, 237, 951
MwoI	GCNNNNNNNGC	8 cut(s)	98, 381, 386, 416, 443, 582, 887, 932
NaeI	GCCGGC	2 cut(s)	99, 952
NdeI	CATATG	1 cut(s)	580
NdeII	GATC	5 cut(s)	54, 117, 222, 679, 936
NgoMIV	GCCGGC	2 cut(s)	97, 950
NlaIII	CATG	5 cut(s)	89, 662, 753, 874, 988
NlaIV	GGNNCC	3 cut(s)	259, 437, 915
NmuCI	GTSAC	1 cut(s)	562
NspI	RCATGY	3 cut(s)	662, 753, 988
PaeI	GCATGC	1 cut(s)	662
PciI	ACATGT	2 cut(s)	749, 984
PdiI	GCCGGC	2 cut(s)	99, 952
PkrI	GCNGC	6 cut(s)	575, 734, 823, 1003, 1054, 1057
PleI	GAGTC	2 cut(s)	788, 962
PpsI	GAGTC	2 cut(s)	788, 962
PscI	ACATGT	2 cut(s)	749, 984
PshBI	ATTAAT	1 cut(s)	309
Psp1406I	AACGTT	1 cut(s)	540
PspN4I	GGNNCC	3 cut(s)	259, 437, 915
PspOMI	GGGCCC	1 cut(s)	435
PspPI	GGNCC	4 cut(s)	140, 435, 436, 476
PstNI	CAGNNNCTG	1 cut(s)	1055
PvuII	CAGCTG	1 cut(s)	1052
RsaI	GTAC	1 cut(s)	533
RsaNI	GTAC	1 cut(s)	532
RseI	CAYNNNNRTG	1 cut(s)	690
SaqAI	TTAA	4 cut(s)	69, 309, 338, 1072
SatI	GCNGC	6 cut(s)	574, 733, 822, 1002, 1053, 1056
Sau3AI	GATC	5 cut(s)	54, 117, 222, 679, 936
Sau96I	GGNCC	4 cut(s)	140, 435, 436, 476
SchI	GAGTC	2 cut(s)	789, 962
SduI	GDGCHC	1 cut(s)	439
SfaNI	GCATC	1 cut(s)	54
SmiMI	CAYNNNNRTG	1 cut(s)	690
SphI	GCATGC	1 cut(s)	662
Sse9I	AATT	5 cut(s)	166, 547, 722, 848, 1031
SsiI	CCGC	3 cut(s)	200, 954, 980
SspMI	CTAG	2 cut(s)	149, 812
TaaI	ACNGT	4 cut(s)	300, 556, 1021, 1044
TaiI	ACGT	2 cut(s)	543, 720
TaqI	TCGA	3 cut(s)	120, 250, 971
TasI	AATT	5 cut(s)	166, 547, 722, 848, 1031
Tru1I	TTAA	4 cut(s)	69, 309, 338, 1072
Tru9I	TTAA	4 cut(s)	69, 309, 338, 1072
TscAI	CASTG	2 cut(s)	448, 561
TseFI	GTSAC	1 cut(s)	562
TseI	GCWGC	6 cut(s)	573, 732, 821, 1001, 1052, 1055
Tsp45I	GTSAC	1 cut(s)	562
TspDTI	ATGAA	3 cut(s)	194, 708, 910
TspRI	CASTG	2 cut(s)	448, 561
VspI	ATTAAT	1 cut(s)	309
XagI	CCTNNNNNAGG	1 cut(s)	147
XapI	RAATTY	3 cut(s)	166, 848, 1031
XceI	RCATGY	3 cut(s)	662, 753, 988
XspI	CTAG	2 cut(s)	149, 812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.