Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0000829

Physical Location & Seq

Genomic Coordinates Reverse (-)

12020845 .. 12021756

Gene Structure 912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g17130.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGACTGGATTGAGCATGCTCAATGCAGGCATCTCAACTCAATTACTACAAACCCTATTCAAGGTGAAAGGTGTTGTACACTATGGAATTGCAGGAAATGGAGATCCCCAACTCCAAATTGGAGATGTCACCATCCCTCAATTTTGGGCTCATACCGGCCTTTGGAATTGGCAGAGGTTTGGAGATGGGCCTAATGATGAATTGTCCTTAGAATCATTTGGAGACTACACAAGAGAAGTTGGTTACATAAAATTTTCAGATTTTAGTAACAAAACCAAAGTTGGAACTTCTGTTCCCAATCTCCTGAACAGTGCATGGTATCAGCCAGAAGAGACCTTCCCAGTCCATGGCACTCCGGAAGTTAGGCAACATGCCTTTTGGGTTCCAGTCAACCACAAATATTTTTCACTTACCAAGAAACTAGAGGTAATTGGCATCATCTCCCAATTTACTTTTCTGTTTGTTATACTTTTGTTATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNP_UDP_1

Protein Analysis

161

Amino Acids

18.1

Weight (kDa)

6.17

Isoelectric Point (pI)

24.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28940 AT4G28940
fragaria_vesca	FvH4_1g05530 FvH4_2g35741 FvH4_2g35750 FvH4_2g35760 FvH4_2g35761 FvH4_2g35762
malus_domestica	MD15G1095100.v1.1 MD15G1095200.v1.1 MD15G1095300.v1.1 MD15G1191300.v1.1
prunus_persica	Prupe.1G450100_v2.0.a1 Prupe.1G450200_v2.0.a1 Prupe.7G225900_v2.0.a1 Prupe.7G225900_v2.0.a1 Prupe.7G225900_v2.0.a1
pyrus_communis	pycom15g08760 pycom15g08770 pycom15g17130
rosa_chinensis	RchiOBHm_Chr1g0336711 RchiOBHm_Chr2g0091231 RchiOBHm_Chr6g0259261 RchiOBHm_Chr6g0259271 RchiOBHm_Chr6g0306011 RchiOBHm_Chr6g0306021
rosa_laevigata	RLG00000010830 RLG00000010831 RLG00000010832 RLG00000014544 RLG00000016193 RLG00000029340
rosa_multiflora	Rmu_sc0002270.1_g000016 Rmu_sc0011974.1_g000004 Rmu_sc0020534.1_g000001 Rmu_sc0035114.1_g000001 Rmu_sc0036553.1_g000001 Rmu_ssc0000050.1_g000090
rosa_roxburghii	Rroxscaffold_2G00150370 Rroxscaffold_7G00162110 Rroxscaffold_7G00162130
rosa_rugosa	Rorug02G0014600 Rorug06G0346400 Rorug06G0346600
rosa_samantha	Rh2AG060400 Rh2BG059100 Rh2CG060900 Rh2DG059700 Rh6AG103200 Rh6AG458200 Rh6AG458400 Rh6BG095600 Rh6BG442400 Rh6BG442500 Rh6BG442600 Rh6BG442700 Rh6CG092500 Rh6CG472700 Rh6CG472800 Rh6CG472900 Rh6DG086500 Rh6DG458800 Rh6DG459000 Rh6DG459100
rosa_wichuraiana	Rw2G004950 Rw6G008910 Rw6G039960 Rw6G039970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	347
AccIII	TCCGGA	1 cut(s)	355
AclWI	GGATC	1 cut(s)	98
AcsI	RAATTY	1 cut(s)	251
AfaI	GTAC	1 cut(s)	78
AfiI	CCNNNNNNNGG	3 cut(s)	61, 162, 347
AgsI	TTSAA	1 cut(s)	61
AjuI	GAANNNNNNNTTGG	2 cut(s)	438, 470
AloI	GAACNNNNNNTCC	4 cut(s)	276, 277, 308, 309
Alw26I	GTCTC	2 cut(s)	216, 326
AlwI	GGATC	1 cut(s)	98
Aor13HI	TCCGGA	1 cut(s)	355
AoxI	GGCC	2 cut(s)	157, 188
ApoI	RAATTY	1 cut(s)	251
AspS9I	GGNCC	1 cut(s)	188
AsuHPI	GGTGA	2 cut(s)	76, 121
BanII	GRGCYC	1 cut(s)	151
BccI	CCATC	2 cut(s)	140, 179
BcoDI	GTCTC	2 cut(s)	216, 326
BfaI	CTAG	1 cut(s)	422
BmgT120I	GGNCC	1 cut(s)	188
BmiI	GGNNCC	1 cut(s)	384
BmrI	ACTGGG	1 cut(s)	335
BmsI	GCATC	2 cut(s)	39, 444
BmuI	ACTGGG	1 cut(s)	335
BsaI	GGTCTC	1 cut(s)	326
BsaJI	CCNNGG	1 cut(s)	346
BsaWI	WCCGGW	1 cut(s)	355
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 162, 347
Bse118I	RCCGGY	1 cut(s)	155
Bse1I	ACTGG	3 cut(s)	10, 341, 386
BseAI	TCCGGA	1 cut(s)	355
BseDI	CCNNGG	1 cut(s)	346
BseGI	GGATG	1 cut(s)	132
BseLI	CCNNNNNNNGG	3 cut(s)	61, 162, 347
BseNI	ACTGG	3 cut(s)	10, 341, 386
BshFI	GGCC	2 cut(s)	159, 190
BsiSI	CCGG	2 cut(s)	156, 356
BslI	CCNNNNNNNGG	3 cut(s)	61, 162, 347
BsmAI	GTCTC	2 cut(s)	216, 326
BsnI	GGCC	2 cut(s)	159, 190
Bso31I	GGTCTC	1 cut(s)	326
Bsp1286I	GDGCHC	1 cut(s)	151
Bsp13I	TCCGGA	1 cut(s)	355
Bsp1407I	TGTACA	1 cut(s)	76
Bsp143I	GATC	1 cut(s)	103
Bsp19I	CCATGG	1 cut(s)	346
BspANI	GGCC	2 cut(s)	159, 190
BspEI	TCCGGA	1 cut(s)	355
BspLI	GGNNCC	1 cut(s)	384
BspPI	GGATC	1 cut(s)	98
BspTNI	GGTCTC	1 cut(s)	326
BsrFI	RCCGGY	1 cut(s)	155
BsrGI	TGTACA	1 cut(s)	76
BsrI	ACTGG	3 cut(s)	10, 341, 386
BssAI	RCCGGY	1 cut(s)	155
BssECI	CCNNGG	1 cut(s)	346
BssMI	GATC	1 cut(s)	103
BssT1I	CCWWGG	1 cut(s)	346
Bst4CI	ACNGT	1 cut(s)	311
Bst6I	CTCTTC	1 cut(s)	324
BstAUI	TGTACA	1 cut(s)	76
BstC8I	GCNNGC	2 cut(s)	17, 28
BstDEI	CTNAG	1 cut(s)	208
BstDSI	CCRYGG	1 cut(s)	346
BstENI	CCTNNNNNAGG	1 cut(s)	59
BstF5I	GGATG	1 cut(s)	132
BstKTI	GATC	1 cut(s)	106
BstMAI	GTCTC	2 cut(s)	216, 326
BstMBI	GATC	1 cut(s)	103
BstNSI	RCATGY	2 cut(s)	19, 374
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BsuRI	GGCC	2 cut(s)	159, 190
BtgI	CCRYGG	1 cut(s)	346
BtsCI	GGATG	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	316
Cac8I	GCNNGC	2 cut(s)	17, 28
Cfr10I	RCCGGY	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	188
Csp6I	GTAC	1 cut(s)	77
CviAII	CATG	4 cut(s)	16, 315, 347, 371
CviJI	RGCY	4 cut(s)	149, 159, 190, 325
CviKI_1	RGCY	4 cut(s)	149, 159, 190, 325
CviQI	GTAC	1 cut(s)	77
DdeI	CTNAG	1 cut(s)	208
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Eco130I	CCWWGG	1 cut(s)	346
Eco24I	GRGCYC	1 cut(s)	151
Eco31I	GGTCTC	1 cut(s)	326
EcoNI	CCTNNNNNAGG	1 cut(s)	59
EcoT14I	CCWWGG	1 cut(s)	346
EcoT38I	GRGCYC	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	346
FaeI	CATG	4 cut(s)	19, 318, 350, 374
FaiI	YATR	9 cut(s)	17, 84, 153, 248, 316, 348, 372, 467, 478
FatI	CATG	4 cut(s)	15, 314, 346, 370
FokI	GGATG	1 cut(s)	119
FriOI	GRGCYC	1 cut(s)	151
FspBI	CTAG	1 cut(s)	422
HaeIII	GGCC	2 cut(s)	159, 190
HapII	CCGG	2 cut(s)	156, 356
Hin1II	CATG	4 cut(s)	19, 318, 350, 374
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HinfI	GANTC	1 cut(s)	212
HpaII	CCGG	2 cut(s)	156, 356
HphI	GGTGA	2 cut(s)	76, 121
Hpy166II	GTNNAC	2 cut(s)	79, 391
Hpy188I	TCNGA	1 cut(s)	259
Hpy188III	TCNNGA	2 cut(s)	304, 356
Hpy8I	GTNNAC	2 cut(s)	79, 391
HpyAV	CCTTC	1 cut(s)	346
HpyCH4III	ACNGT	1 cut(s)	311
HpyCH4V	TGCA	3 cut(s)	26, 92, 314
HpyF3I	CTNAG	1 cut(s)	208
Hsp92II	CATG	4 cut(s)	19, 318, 350, 374
Kpn2I	TCCGGA	1 cut(s)	355
Kzo9I	GATC	1 cut(s)	103
LpnPI	CCDG	8 cut(s)	12, 78, 169, 317, 339, 354, 369, 399
LweI	GCATC	2 cut(s)	39, 444
MaeI	CTAG	1 cut(s)	422
MaeIII	GTNAC	3 cut(s)	127, 242, 266
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MboII	GAAGA	1 cut(s)	341
MflI	RGATCY	1 cut(s)	103
MhlI	GDGCHC	1 cut(s)	151
MluCI	AATT	9 cut(s)	41, 87, 117, 140, 166, 200, 251, 429, 446
MmeI	TCCRAC	1 cut(s)	262
MnlI	CCTC	3 cut(s)	147, 168, 418
MroI	TCCGGA	1 cut(s)	355
MspI	CCGG	2 cut(s)	156, 356
NcoI	CCATGG	1 cut(s)	346
NdeII	GATC	1 cut(s)	103
NlaIII	CATG	4 cut(s)	19, 318, 350, 374
NlaIV	GGNNCC	1 cut(s)	384
NmuCI	GTSAC	1 cut(s)	127
NspI	RCATGY	2 cut(s)	19, 374
PaeI	GCATGC	1 cut(s)	19
PfeI	GAWTC	1 cut(s)	212
PflMI	CCANNNNNTGG	1 cut(s)	347
PspN4I	GGNNCC	1 cut(s)	384
PspPI	GGNCC	1 cut(s)	188
PsuI	RGATCY	1 cut(s)	103
RsaI	GTAC	1 cut(s)	78
RsaNI	GTAC	1 cut(s)	77
Sau3AI	GATC	1 cut(s)	103
Sau96I	GGNCC	1 cut(s)	188
SduI	GDGCHC	1 cut(s)	151
SetI	ASST	5 cut(s)	66, 73, 179, 338, 429
SfaNI	GCATC	2 cut(s)	39, 444
SphI	GCATGC	1 cut(s)	19
Sse9I	AATT	9 cut(s)	41, 87, 117, 140, 166, 200, 251, 429, 446
SspI	AATATT	1 cut(s)	401
SspMI	CTAG	1 cut(s)	422
StyI	CCWWGG	1 cut(s)	346
TaaI	ACNGT	1 cut(s)	311
TasI	AATT	9 cut(s)	41, 87, 117, 140, 166, 200, 251, 429, 446
TatI	WGTACW	1 cut(s)	76
TfiI	GAWTC	1 cut(s)	212
TscAI	CASTG	1 cut(s)	316
TseFI	GTSAC	1 cut(s)	127
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	1 cut(s)	213
TspRI	CASTG	1 cut(s)	316
Van91I	CCANNNNNTGG	1 cut(s)	347
XagI	CCTNNNNNAGG	1 cut(s)	59
XapI	RAATTY	1 cut(s)	251
XceI	RCATGY	2 cut(s)	19, 374
XcmI	CCANNNNNNNNNTGG	1 cut(s)	116
XspI	CTAG	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.