Rorug06G0346400
ERF Family

Phosphorylase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000829
Physical Location & Seq
Forward (+)
49719748 .. 49721643
1896 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0346400.1

Sequence Viewer

Length: 1536 bp
ATGGTGAGGCTCAAGGGAGCGGGAGGTGCCGGAGTTCAACCACACGTTTCCGGTGAACTTTCTACTGTGGAATTCGATTTACAGGTTCTGAAGGATCAGACAACAGCCAAGATGGTTGCTATGCAAGAGTCTGTAGCAGCTGTTCAAGGATCGGTAGCTGAGGTGCAAGAATCGGTAGCATCGTTGCGCAACCAGATCTTAGAGGACATGCGGCTACTATTAGCTCAGCACCCTAAGCCTCAGATCGGGTCATCTCAGCATAGCCAAGCTCAGATCGGGCCTAGCCAAGCTCAGATAGGGTCACCACAGCTCAGTTTTGGGTCTCTACACGTATCTGAGGGTATTCCATGTGATAATCTAAAGGGAAATGCATCACCTGCATCATCTGTGCTAGCTACTTCCTCAGCAACCTCCACTAATGTAAAGGGTAGTATTTCTAAACCCCCGGCAACTGCTCATCTATTACCCTTGAATAATGATGATGTTATGATAGGATTTGCTAGTGAAACTTATTCTAAGATGATGAATACGGAGGGAATTGTGCAAACCACTAAGGCTATGATATCTGGATCTGTGGTGTTAGATAACCCACACAACAACCTAGCTGCACCTAACTCGATATCCCCACCTATGCATTCATCACAGCTACCTAGCCCCTATGCTTTACCCCAATTCTATGTGCCTTACAACACTCCTCCTCCACAATCTTTTGGCTATCAACACACTCCACCAAATCAACATCATACTGATCCCAACCTACCAACAATGAGGCAGATGAGGTTGGAGTTCAATGTGTTTAGTGGAGGTGATCCAGTGGAATGGCTCAATAAGGCAGAGCAGTTTTTTGAATTTTATCAAATACCTGAAGAAAAAAAGTTGGCTATTGCTACTATGCACCTTGCTGACAAGGCTTCTGATAGATGGTATATGTTCAAGCATGAATTTCCTCCCACTTGGGCAGGGCTGGCTGATCTCTTGATGAGGGAGTTTAGTGGCTATAATATTGTTGATTACCAGGCAACTCTAGCTAGAATGAGCCAGACTGGTAATGTGGAACAATACAAGGAACAATTTACCAAGCTTTCAAGAAGAGCACCTGGTGTTTCTCAACAGGTTCTGTTGTCCTGCTTCTTGAGGGGACTGAAAAGTGACATTAGGGCTAATGTCAAGGCTCAGAAGCCAAAGTCCCTTTATGAGGTGTGTGAGTTAGCTAGGATTTATGAAGAAAGAGAGGCAAGTCACCGAAACCAAGCAAGGAACACCATAGGAAGCAGACCTTTCTCTACCAACAACTCGAGTTTGCAGGGAAAAGCCAATGTAAACCTCAATGGGAGTCAACCTTCTAGATACTCAAGTATTCCAGCTAGAACTAACTCTATGGTTCATGCTCCTGTTGGTAACAACAACAATACTGGAAGTAGAAAATTGAGTAAAGCTGAATATCAGGAGAGAAGAGCTAGAAATCAATGTTACGTTTCTTCTGTGATGAGCTCTTTAGGCCAGGCCACAACTGCAGAAAGGGACAACTCATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNP_UDP_1

Protein Analysis

511

Amino Acids

56.08

Weight (kDa)

8.83

Isoelectric Point (pI)

45.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ty3_capsid PF19259 282 - 418 2.7e-09 Ty3 transposon capsid-like protein
Retrotrans_gag PF03732 295 - 382 1.1e-10 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 385
Acc16I TGCGCA 1 cut(s) 188
Acc36I ACCTGC 1 cut(s) 385
AccB1I GGYRCC 1 cut(s) 26
AccBSI CCGCTC 1 cut(s) 20
AciI CCGC 2 cut(s) 20, 211
AclWI GGATC 5 cut(s) 102, 157, 577, 743, 803
AcsI RAATTY 3 cut(s) 71, 848, 941
AcuI CTGAAG 2 cut(s) 110, 885
AdeI CACNNNGTG 1 cut(s) 1100
AfiI CCNNNNNNNGG 2 cut(s) 245, 1195
AflIII ACRYGT 2 cut(s) 43, 328
AgsI TTSAA 7 cut(s) 38, 146, 472, 790, 848, 934, 1086
AjnI CCWGG 3 cut(s) 1014, 1096, 1500
Alw21I GWGCWC 2 cut(s) 1096, 1493
Alw26I GTCTC 1 cut(s) 327
AlwI GGATC 5 cut(s) 102, 157, 577, 743, 803
AlwNI CAGNNNCTG 2 cut(s) 88, 1117
Ama87I CYCGRG 1 cut(s) 1294
AoxI GGCC 3 cut(s) 278, 1498, 1503
ApeKI GCWGC 2 cut(s) 137, 605
ApoI RAATTY 3 cut(s) 71, 848, 941
AspLEI GCGC 1 cut(s) 189
AspS9I GGNCC 1 cut(s) 278
AsuC2I CCSGG 1 cut(s) 446
AsuHPI GGTGA 6 cut(s) 16, 65, 294, 366, 818, 1232
AsuNHI GCTAGC 1 cut(s) 391
AvaI CYCGRG 1 cut(s) 1294
BaeI ACNNNNGTAYC 2 cut(s) 1339, 1372
BanI GGYRCC 1 cut(s) 26
BanII GRGCYC 1 cut(s) 1493
Bbv12I GWGCWC 2 cut(s) 1096, 1493
BbvCI CCTCAGC 2 cut(s) 159, 403
BbvI GCAGC 2 cut(s) 149, 592
BccI CCATC 2 cut(s) 106, 915
BcgI CGANNNNNNTGC 2 cut(s) 597, 631
BciT130I CCWGG 3 cut(s) 1016, 1098, 1502
BcnI CCSGG 1 cut(s) 446
BcoDI GTCTC 1 cut(s) 327
BfmI CTRYAG 2 cut(s) 132, 1512
BfuAI ACCTGC 1 cut(s) 385
BglII AGATCT 1 cut(s) 195
BisI GCNGC 3 cut(s) 138, 212, 606
BlpI GCTNAGC 1 cut(s) 225
BlsI GCNGC 3 cut(s) 139, 213, 607
Bme1390I CCNGG 4 cut(s) 446, 1016, 1098, 1502
BmeT110I CYCGRG 1 cut(s) 1294
BmgT120I GGNCC 1 cut(s) 278
BmiI GGNNCC 1 cut(s) 28
BmrFI CCNGG 4 cut(s) 446, 1016, 1098, 1502
BmsI GCATC 3 cut(s) 188, 380, 389
BmtI GCTAGC 1 cut(s) 395
Bpu10I CCTNAGC 3 cut(s) 159, 234, 403
Bpu1102I GCTNAGC 1 cut(s) 225
BpuEI CTTGAG 2 cut(s) 1153, 1336
BpuMI CCSGG 1 cut(s) 446
BsaAI YACGTR 1 cut(s) 331
BsaI GGTCTC 1 cut(s) 327
BsaJI CCNNGG 1 cut(s) 444
BsaWI WCCGGW 1 cut(s) 50
BsaXI ACNNNNNCTCC 2 cut(s) 682, 712
Bsc4I CCNNNNNNNGG 2 cut(s) 245, 1195
Bse1I ACTGG 3 cut(s) 812, 1048, 1417
BseBI CCWGG 3 cut(s) 1016, 1098, 1502
BseDI CCNNGG 1 cut(s) 444
BseLI CCNNNNNNNGG 2 cut(s) 245, 1195
BseNI ACTGG 3 cut(s) 812, 1048, 1417
BseRI GAGGAG 2 cut(s) 684, 687
BseXI GCAGC 2 cut(s) 149, 592
BsgI GTGCAG 1 cut(s) 591
BshFI GGCC 3 cut(s) 280, 1500, 1505
BshNI GGYRCC 1 cut(s) 26
BsiHKAI GWGCWC 2 cut(s) 1096, 1493
BsiHKCI CYCGRG 1 cut(s) 1294
BsiSI CCGG 3 cut(s) 30, 51, 446
BslFI GGGAC 2 cut(s) 1152, 1171
BslI CCNNNNNNNGG 2 cut(s) 245, 1195
BsmAI GTCTC 1 cut(s) 327
BsmFI GGGAC 2 cut(s) 1152, 1171
BsmI GAATGC 1 cut(s) 634
BsnI GGCC 3 cut(s) 280, 1500, 1505
Bso31I GGTCTC 1 cut(s) 327
BsoBI CYCGRG 1 cut(s) 1294
Bsp1286I GDGCHC 2 cut(s) 1096, 1493
Bsp143I GATC 9 cut(s) 94, 149, 195, 243, 273, 569, 748, 808, 970
Bsp1720I GCTNAGC 1 cut(s) 225
BspACI CCGC 2 cut(s) 20, 211
BspANI GGCC 3 cut(s) 280, 1500, 1505
BspLI GGNNCC 1 cut(s) 28
BspMAI CTGCAG 1 cut(s) 1516
BspMI ACCTGC 1 cut(s) 385
BspOI GCTAGC 1 cut(s) 395
BspPI GGATC 5 cut(s) 102, 157, 577, 743, 803
BspQI GCTCTTC 2 cut(s) 1084, 1447
BspT107I GGYRCC 1 cut(s) 26
BspTNI GGTCTC 1 cut(s) 327
BsrBI CCGCTC 1 cut(s) 20
BsrI ACTGG 3 cut(s) 812, 1048, 1417
BssECI CCNNGG 1 cut(s) 444
BssMI GATC 9 cut(s) 94, 149, 195, 243, 273, 569, 748, 808, 970
Bst2UI CCWGG 3 cut(s) 1016, 1098, 1502
Bst4CI ACNGT 1 cut(s) 67
Bst6I CTCTTC 2 cut(s) 1084, 1447
BstAPI GCANNNNNTGC 1 cut(s) 377
BstBAI YACGTR 1 cut(s) 331
BstC8I GCNNGC 2 cut(s) 393, 966
BstEII GGTNACC 1 cut(s) 300
BstENI CCTNNNNNAGG 1 cut(s) 1193
BstHHI GCGC 1 cut(s) 189
BstKTI GATC 9 cut(s) 97, 152, 198, 246, 276, 572, 751, 811, 973
BstMAI GTCTC 1 cut(s) 327
BstMBI GATC 9 cut(s) 94, 149, 195, 243, 273, 569, 748, 808, 970
BstMWI GCNNNNNNNGC 8 cut(s) 26, 235, 377, 908, 965, 1025, 1497, 1511
BstNI CCWGG 3 cut(s) 1016, 1098, 1502
BstNSI RCATGY 1 cut(s) 211
BstPI GGTNACC 1 cut(s) 300
BstSCI CCNGG 4 cut(s) 444, 1014, 1096, 1500
BstSFI CTRYAG 2 cut(s) 132, 1512
BstV1I GCAGC 2 cut(s) 149, 592
BstX2I RGATCY 2 cut(s) 195, 569
BstXI CCANNNNNNTGG 1 cut(s) 819
BstYI RGATCY 2 cut(s) 195, 569
BsuRI GGCC 3 cut(s) 280, 1500, 1505
BtsIMutI CAGTG 1 cut(s) 819
BveI ACCTGC 1 cut(s) 385
Cac8I GCNNGC 2 cut(s) 393, 966
CaiI CAGNNNCTG 2 cut(s) 88, 1117
CfoI GCGC 1 cut(s) 189
Cfr13I GGNCC 1 cut(s) 278
CsiI ACCWGGT 1 cut(s) 1096
CviAII CATG 5 cut(s) 208, 348, 938, 1385, 1530
DpnI GATC 9 cut(s) 96, 151, 197, 245, 275, 571, 750, 810, 972
DpnII GATC 9 cut(s) 94, 149, 195, 243, 273, 569, 748, 808, 970
DraIII CACNNNGTG 1 cut(s) 1100
Eam1104I CTCTTC 2 cut(s) 1084, 1447
EarI CTCTTC 2 cut(s) 1084, 1447
Ecl136II GAGCTC 1 cut(s) 1491
Eco24I GRGCYC 1 cut(s) 1493
Eco31I GGTCTC 1 cut(s) 327
Eco32I GATATC 2 cut(s) 564, 621
Eco53kI GAGCTC 1 cut(s) 1491
Eco57I CTGAAG 2 cut(s) 110, 885
Eco88I CYCGRG 1 cut(s) 1294
Eco91I GGTNACC 1 cut(s) 300
EcoICRI GAGCTC 1 cut(s) 1491
EcoNI CCTNNNNNAGG 1 cut(s) 1193
EcoO65I GGTNACC 1 cut(s) 300
EcoRI GAATTC 1 cut(s) 71
EcoRII CCWGG 3 cut(s) 1014, 1096, 1500
EcoRV GATATC 2 cut(s) 564, 621
EcoT22I ATGCAT 2 cut(s) 373, 636
EcoT38I GRGCYC 1 cut(s) 1493
FaeI CATG 5 cut(s) 211, 351, 941, 1388, 1533
FalI AAGNNNNNCTT 2 cut(s) 1261, 1293
FaqI GGGAC 2 cut(s) 1152, 1171
FatI CATG 5 cut(s) 207, 347, 937, 1384, 1529
FauI CCCGC 1 cut(s) 13
Fnu4HI GCNGC 3 cut(s) 138, 212, 606
FriOI GRGCYC 1 cut(s) 1493
Fsp4HI GCNGC 3 cut(s) 138, 212, 606
FspI TGCGCA 1 cut(s) 188
GlaI GCGC 1 cut(s) 188
GluI GCNGC 3 cut(s) 138, 212, 606
HaeIII GGCC 3 cut(s) 280, 1500, 1505
HapII CCGG 3 cut(s) 30, 51, 446
HhaI GCGC 1 cut(s) 189
Hin1II CATG 5 cut(s) 211, 351, 941, 1388, 1533
Hin6I GCGC 1 cut(s) 187
HinP1I GCGC 1 cut(s) 187
HincII GTYRAC 1 cut(s) 1337
HindII GTYRAC 1 cut(s) 1337
HindIII AAGCTT 1 cut(s) 1079
HinfI GANTC 3 cut(s) 128, 170, 1333
HpaII CCGG 3 cut(s) 30, 51, 446
HphI GGTGA 6 cut(s) 16, 65, 294, 366, 818, 1232
Hpy166II GTNNAC 3 cut(s) 56, 1321, 1337
Hpy188I TCNGA 8 cut(s) 90, 99, 243, 273, 294, 337, 916, 1176
Hpy188III TCNNGA 6 cut(s) 567, 976, 1086, 1132, 1344, 1445
Hpy8I GTNNAC 3 cut(s) 56, 1321, 1337
HpyAV CCTTC 2 cut(s) 85, 1350
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4IV ACGT 3 cut(s) 45, 330, 1473
HpyF10VI GCNNNNNNNGC 8 cut(s) 26, 235, 377, 908, 965, 1025, 1497, 1511
HpySE526I ACGT 3 cut(s) 45, 330, 1473
Hsp92II CATG 5 cut(s) 211, 351, 941, 1388, 1533
HspAI GCGC 1 cut(s) 187
Kzo9I GATC 9 cut(s) 94, 149, 195, 243, 273, 569, 748, 808, 970
LguI GCTCTTC 2 cut(s) 1084, 1447
LmnI GCTCC 2 cut(s) 17, 1393
Lsp1109I GCAGC 2 cut(s) 149, 592
LweI GCATC 3 cut(s) 188, 380, 389
MabI ACCWGGT 1 cut(s) 1096
MaeII ACGT 3 cut(s) 45, 330, 1473
MaeIII GTNAC 5 cut(s) 300, 1148, 1238, 1397, 1469
MalI GATC 9 cut(s) 96, 151, 197, 245, 275, 571, 750, 810, 972
MbiI CCGCTC 1 cut(s) 20
MboI GATC 9 cut(s) 94, 149, 195, 243, 273, 569, 748, 808, 970
MboII GAAGA 5 cut(s) 878, 1101, 1235, 1464, 1470
MflI RGATCY 2 cut(s) 195, 569
MhlI GDGCHC 2 cut(s) 1096, 1493
MluCI AATT 7 cut(s) 71, 537, 671, 848, 941, 1070, 1424
MlyI GAGTC 2 cut(s) 137, 1342
MmeI TCCRAC 1 cut(s) 762
Mph1103I ATGCAT 2 cut(s) 373, 636
MspA1I CMGCKG 1 cut(s) 140
MspI CCGG 3 cut(s) 30, 51, 446
MspR9I CCNGG 4 cut(s) 446, 1016, 1098, 1502
Mva1269I GAATGC 1 cut(s) 634
MvaI CCWGG 3 cut(s) 1016, 1098, 1502
MwoI GCNNNNNNNGC 8 cut(s) 26, 235, 377, 908, 965, 1025, 1497, 1511
NciI CCSGG 1 cut(s) 446
NdeII GATC 9 cut(s) 94, 149, 195, 243, 273, 569, 748, 808, 970
NheI GCTAGC 1 cut(s) 391
NlaIII CATG 5 cut(s) 211, 351, 941, 1388, 1533
NlaIV GGNNCC 1 cut(s) 28
NmuCI GTSAC 3 cut(s) 300, 1148, 1238
NsbI TGCGCA 1 cut(s) 188
NsiI ATGCAT 2 cut(s) 373, 636
NspI RCATGY 1 cut(s) 211
PaeR7I CTCGAG 1 cut(s) 1294
PaqCI CACCTGC 1 cut(s) 385
PciSI GCTCTTC 2 cut(s) 1084, 1447
PcsI WCGNNNNNNNCGW 1 cut(s) 179
PctI GAATGC 1 cut(s) 634
PfeI GAWTC 1 cut(s) 170
PkrI GCNGC 3 cut(s) 139, 213, 607
PleI GAGTC 2 cut(s) 136, 1341
PpsI GAGTC 2 cut(s) 136, 1341
Ppu21I YACGTR 1 cut(s) 331
Psp124BI GAGCTC 1 cut(s) 1493
Psp6I CCWGG 3 cut(s) 1014, 1096, 1500
PspEI GGTNACC 1 cut(s) 300
PspGI CCWGG 3 cut(s) 1014, 1096, 1500
PspN4I GGNNCC 1 cut(s) 28
PspPI GGNCC 1 cut(s) 278
PspXI VCTCGAGB 1 cut(s) 1294
PsrI GAACNNNNNNTAC 2 cut(s) 126, 158
PstI CTGCAG 1 cut(s) 1516
PstNI CAGNNNCTG 2 cut(s) 88, 1117
PsuI RGATCY 2 cut(s) 195, 569
PvuII CAGCTG 1 cut(s) 140
SacI GAGCTC 1 cut(s) 1493
SapI GCTCTTC 2 cut(s) 1084, 1447
SatI GCNGC 3 cut(s) 138, 212, 606
Sau3AI GATC 9 cut(s) 94, 149, 195, 243, 273, 569, 748, 808, 970
Sau96I GGNCC 1 cut(s) 278
SchI GAGTC 2 cut(s) 137, 1342
ScrFI CCNGG 4 cut(s) 446, 1016, 1098, 1502
SduI GDGCHC 2 cut(s) 1096, 1493
SexAI ACCWGGT 1 cut(s) 1096
SfaNI GCATC 3 cut(s) 188, 380, 389
SfcI CTRYAG 2 cut(s) 132, 1512
Sfr274I CTCGAG 1 cut(s) 1294
SlaI CTCGAG 1 cut(s) 1294
SmlI CTYRAG 4 cut(s) 11, 1132, 1294, 1351
SmoI CTYRAG 4 cut(s) 11, 1132, 1294, 1351
Sse9I AATT 7 cut(s) 71, 537, 671, 848, 941, 1070, 1424
SsiI CCGC 2 cut(s) 20, 211
SspI AATATT 1 cut(s) 1003
SstI GAGCTC 1 cut(s) 1493
StyD4I CCNGG 4 cut(s) 444, 1014, 1096, 1500
TaaI ACNGT 1 cut(s) 67
TaiI ACGT 3 cut(s) 48, 333, 1476
TaqI TCGA 3 cut(s) 75, 617, 1295
TasI AATT 7 cut(s) 71, 537, 671, 848, 941, 1070, 1424
TauI GCSGC 1 cut(s) 214
TfiI GAWTC 1 cut(s) 170
TscAI CASTG 1 cut(s) 819
TseFI GTSAC 3 cut(s) 300, 1148, 1238
TseI GCWGC 2 cut(s) 137, 605
Tsp45I GTSAC 3 cut(s) 300, 1148, 1238
TspDTI ATGAA 5 cut(s) 539, 627, 954, 1236, 1373
TspGWI ACGGA 1 cut(s) 545
TspRI CASTG 1 cut(s) 819
XagI CCTNNNNNAGG 1 cut(s) 1193
XapI RAATTY 3 cut(s) 71, 848, 941
XbaI TCTAGA 1 cut(s) 1343
XceI RCATGY 1 cut(s) 211
XhoI CTCGAG 1 cut(s) 1294
Zsp2I ATGCAT 2 cut(s) 373, 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.