Rh6DG458800
ERF Family

Phosphorylase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000829
Physical Location & Seq
Forward (+)
62860285 .. 62862924
2640 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG458800.1

Sequence Viewer

Length: 1191 bp
ATGCACATCCCTTTGTTCTATAAATTTGGGTTTTTCTTGGCTACTATAATTTTGCGATTCATATACCTACCTCTTTATCTTCGTTTTTGGCGCCCTGAATATATCAAAATGGGGGTAGCTTGGCCCTACGCAGTTGTTTATGCTGTGAGCATCAGCTTGATGATGCTCAACGGAGTAGTGCAGTACACAAGTGCTGTACTACCTGAAGAAACATTGGAATTGATAGCCGAGGCCAACAAGAATGGCCCTTATTTAGGCTTGGTCATTCCAAATTCTTTCGAAATGGATCCTCTCCTTCAATCTCCGAACTTCACTTCCTCTAATTTGACTATAGATTTTTCTGGAAGGAGATTTCGGTTTGGAACGATTGCTGAAAAAAAAGTCATATTAGTCATGACCGGACTTGCCATGATTAATGCAGGAATAACCACTCAGCTCTTGCTAAGCCTATTCGATATAGAAGGGGTGGTGCATTATGGCATAGCTGGCAATGCAAACCCAGATCTCCATCTTGCAGATGTGGTCATTCCTCAGTATTGGGCGCATACTGCTCTTTGGAACTGGCAGAGATATGGAAATGGACCAGAAGATGAGCTACCCCTTGAATCACAAGGAGACTACACCAGAGACATTGGCTACTTAAAATTTGCAAATTATACAGTCAATATGACAGATAGAAGCTCATACGACAACCTGTTGAACAATATCTGGTATCAACCGGAGGAAGTCTTCCCCGTCGATGGAACTCCAGAACAAAGAGAGCACGCCTTTTGGATCCCTGTTGATCCATTCTACTATGAAGTTTCCCAAAAGCTAGAGGATGTGATACTGGAAGGTTGCCTAAACTCAACGACGTGTTTGTCACATACACCAAGAGTGGCAAGAGTCCAAAGGGGAACAAGTGCAAGCATTTACCTTAACAATGCTGCATATCGCGACTTCATATATGATAAGTTCAACATAACTCCGGTGGATATGGAAAGTGCTTCTGTTGCTTTGATATGTCTTCAACAAAAGGTGCCTTTCATTGTCATCAGAGCGCTCTCTGACTTGGCCGGTGGTGGCTCTGCAGATTCGAATGAGGCTGACACTTTCGTCACTCTTGCTTCCAACAATTCAGTCACAGTTCTTTTGGAATTTGTGAAACACTTATCTGCTGCTACTATCTCATTGAGCAACATCAATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNP_UDP_1

Protein Analysis

396

Amino Acids

44.53

Weight (kDa)

4.86

Isoelectric Point (pI)

38.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNP_UDP_1 PF01048 86 - 382 9.3e-29 Phosphorylase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 859, 1094
AccB1I GGYRCC 2 cut(s) 90, 1018
AccII CGCG 1 cut(s) 936
AclWI GGATC 5 cut(s) 281, 294, 769, 779, 782
AcoI YGGCCR 1 cut(s) 1053
AcsI RAATTY 4 cut(s) 23, 271, 644, 1136
AcuI CTGAAG 1 cut(s) 225
AcyI GRCGYC 1 cut(s) 91
AfaI GTAC 2 cut(s) 185, 198
AfeI AGCGCT 1 cut(s) 1041
AfiI CCNNNNNNNGG 2 cut(s) 254, 740
AflIII ACRYGT 1 cut(s) 854
AgsI TTSAA 5 cut(s) 299, 605, 700, 958, 1010
AjiI CACGTC 1 cut(s) 855
AloI GAACNNNNNNTCC 2 cut(s) 299, 331
AluBI AGCT 7 cut(s) 119, 156, 436, 485, 595, 681, 814
AluI AGCT 7 cut(s) 119, 156, 436, 485, 595, 681, 814
Alw21I GWGCWC 1 cut(s) 765
Alw26I GTCTC 2 cut(s) 609, 621
AlwI GGATC 5 cut(s) 281, 294, 769, 779, 782
Aor51HI AGCGCT 1 cut(s) 1041
AoxI GGCC 4 cut(s) 122, 231, 244, 1053
ApeKI GCWGC 2 cut(s) 926, 1157
ApoI RAATTY 4 cut(s) 23, 271, 644, 1136
AseI ATTAAT 1 cut(s) 414
AspLEI GCGC 3 cut(s) 93, 544, 1042
AspS9I GGNCC 3 cut(s) 123, 245, 581
AsuII TTCGAA 2 cut(s) 279, 1076
AvaII GGWCC 1 cut(s) 581
BamHI GGATCC 2 cut(s) 286, 774
BanI GGYRCC 2 cut(s) 90, 1018
BarI GAAGNNNNNNTAC 2 cut(s) 579, 611
BbsI GAAGAC 2 cut(s) 721, 998
Bbv12I GWGCWC 1 cut(s) 765
BbvI GCAGC 2 cut(s) 913, 1144
BccI CCATC 2 cut(s) 516, 734
BcoDI GTCTC 2 cut(s) 609, 621
BfaI CTAG 1 cut(s) 815
BfmI CTRYAG 2 cut(s) 330, 1068
BfoI RGCGCY 2 cut(s) 94, 1043
BglII AGATCT 1 cut(s) 502
BisI GCNGC 2 cut(s) 927, 1158
BlpI GCTNAGC 1 cut(s) 443
BlsI GCNGC 2 cut(s) 928, 1159
Bme18I GGWCC 1 cut(s) 581
BmgBI CACGTC 1 cut(s) 855
BmgT120I GGNCC 3 cut(s) 123, 245, 581
BmiI GGNNCC 4 cut(s) 92, 288, 776, 1020
BmsI GCATC 2 cut(s) 153, 159
BpiI GAAGAC 2 cut(s) 721, 998
BpmI CTGGAG 1 cut(s) 732
Bpu1102I GCTNAGC 1 cut(s) 443
Bpu14I TTCGAA 2 cut(s) 279, 1076
BsaBI GATNNNNATC 1 cut(s) 507
BsaHI GRCGYC 1 cut(s) 91
BsaJI CCNNGG 1 cut(s) 228
BsaWI WCCGGW 3 cut(s) 398, 718, 967
Bsc4I CCNNNNNNNGG 2 cut(s) 254, 740
Bse118I RCCGGY 1 cut(s) 1055
Bse1I ACTGG 2 cut(s) 566, 834
Bse3DI GCAATG 1 cut(s) 496
Bse8I GATNNNNATC 1 cut(s) 507
BseDI CCNNGG 1 cut(s) 228
BseGI GGATG 2 cut(s) 6, 826
BseJI GATNNNNATC 1 cut(s) 507
BseLI CCNNNNNNNGG 2 cut(s) 254, 740
BseMI GCAATG 1 cut(s) 496
BseMII CTCAG 2 cut(s) 446, 545
BseNI ACTGG 2 cut(s) 566, 834
BseXI GCAGC 2 cut(s) 913, 1144
BsgI GTGCAG 1 cut(s) 200
Bsh1236I CGCG 1 cut(s) 936
BshFI GGCC 4 cut(s) 124, 233, 246, 1055
BshNI GGYRCC 2 cut(s) 90, 1018
BsiHKAI GWGCWC 1 cut(s) 765
BsiSI CCGG 4 cut(s) 399, 719, 968, 1056
BslI CCNNNNNNNGG 2 cut(s) 254, 740
BsmAI GTCTC 2 cut(s) 609, 621
BsnI GGCC 4 cut(s) 124, 233, 246, 1055
Bsp119I TTCGAA 2 cut(s) 279, 1076
Bsp1286I GDGCHC 1 cut(s) 765
Bsp143I GATC 4 cut(s) 286, 502, 774, 784
Bsp1720I GCTNAGC 1 cut(s) 443
Bsp68I TCGCGA 1 cut(s) 936
BspANI GGCC 4 cut(s) 124, 233, 246, 1055
BspCNI CTCAG 2 cut(s) 445, 544
BspFNI CGCG 1 cut(s) 936
BspHI TCATGA 1 cut(s) 393
BspLI GGNNCC 4 cut(s) 92, 288, 776, 1020
BspMAI CTGCAG 1 cut(s) 1072
BspPI GGATC 5 cut(s) 281, 294, 769, 779, 782
BspT104I TTCGAA 2 cut(s) 279, 1076
BspT107I GGYRCC 2 cut(s) 90, 1018
BsrDI GCAATG 1 cut(s) 496
BsrFI RCCGGY 1 cut(s) 1055
BsrI ACTGG 2 cut(s) 566, 834
BssAI RCCGGY 1 cut(s) 1055
BssECI CCNNGG 1 cut(s) 228
BssMI GATC 4 cut(s) 286, 502, 774, 784
BssNI GRCGYC 1 cut(s) 91
Bst4CI ACNGT 2 cut(s) 661, 1126
BstACI GRCGYC 1 cut(s) 91
BstBI TTCGAA 2 cut(s) 279, 1076
BstC8I GCNNGC 3 cut(s) 487, 765, 907
BstDEI CTNAG 3 cut(s) 432, 443, 531
BstENI CCTNNNNNAGG 1 cut(s) 252
BstF5I GGATG 2 cut(s) 6, 826
BstFNI CGCG 1 cut(s) 936
BstH2I RGCGCY 2 cut(s) 94, 1043
BstHHI GCGC 3 cut(s) 93, 544, 1042
BstKTI GATC 4 cut(s) 289, 505, 777, 787
BstMAI GTCTC 2 cut(s) 609, 621
BstMBI GATC 4 cut(s) 286, 502, 774, 784
BstMWI GCNNNNNNNGC 4 cut(s) 486, 491, 548, 992
BstSFI CTRYAG 2 cut(s) 330, 1068
BstUI CGCG 1 cut(s) 936
BstV1I GCAGC 2 cut(s) 913, 1144
BstV2I GAAGAC 2 cut(s) 721, 998
BstX2I RGATCY 3 cut(s) 286, 502, 774
BstYI RGATCY 3 cut(s) 286, 502, 774
BsuRI GGCC 4 cut(s) 124, 233, 246, 1055
BtrI CACGTC 1 cut(s) 855
BtsCI GGATG 2 cut(s) 6, 826
BtuMI TCGCGA 1 cut(s) 936
Cac8I GCNNGC 3 cut(s) 487, 765, 907
CciI TCATGA 1 cut(s) 393
CfoI GCGC 3 cut(s) 93, 544, 1042
Cfr10I RCCGGY 1 cut(s) 1055
Cfr13I GGNCC 3 cut(s) 123, 245, 581
Csp6I GTAC 2 cut(s) 184, 197
CviAII CATG 2 cut(s) 394, 409
CviQI GTAC 2 cut(s) 184, 197
DdeI CTNAG 3 cut(s) 432, 443, 531
DinI GGCGCC 1 cut(s) 92
DpnI GATC 4 cut(s) 288, 504, 776, 786
DpnII GATC 4 cut(s) 286, 502, 774, 784
DrdI GACNNNNNNGTC 2 cut(s) 859, 1094
DseDI GACNNNNNNGTC 2 cut(s) 859, 1094
EaeI YGGCCR 1 cut(s) 1053
Eco47I GGWCC 1 cut(s) 581
Eco47III AGCGCT 1 cut(s) 1041
Eco57I CTGAAG 1 cut(s) 225
EcoNI CCTNNNNNAGG 1 cut(s) 252
EgeI GGCGCC 1 cut(s) 92
EheI GGCGCC 1 cut(s) 92
FaeI CATG 2 cut(s) 397, 412
FatI CATG 2 cut(s) 393, 408
Fnu4HI GCNGC 2 cut(s) 927, 1158
FokI GGATG 1 cut(s) 833
Fsp4HI GCNGC 2 cut(s) 927, 1158
FspBI CTAG 1 cut(s) 815
GlaI GCGC 3 cut(s) 92, 543, 1041
GluI GCNGC 2 cut(s) 927, 1158
GsuI CTGGAG 1 cut(s) 732
HaeII RGCGCY 2 cut(s) 94, 1043
HaeIII GGCC 4 cut(s) 124, 233, 246, 1055
HapII CCGG 4 cut(s) 399, 719, 968, 1056
HhaI GCGC 3 cut(s) 93, 544, 1042
Hin1I GRCGYC 1 cut(s) 91
Hin1II CATG 2 cut(s) 397, 412
Hin6I GCGC 3 cut(s) 91, 542, 1040
HinP1I GCGC 3 cut(s) 91, 542, 1040
HinfI GANTC 4 cut(s) 57, 605, 885, 1073
HpaII CCGG 4 cut(s) 399, 719, 968, 1056
Hpy166II GTNNAC 1 cut(s) 186
Hpy188I TCNGA 3 cut(s) 306, 1037, 1048
Hpy188III TCNNGA 4 cut(s) 342, 394, 749, 935
Hpy8I GTNNAC 1 cut(s) 186
Hpy99I CGWCG 2 cut(s) 740, 856
HpyAV CCTTC 4 cut(s) 305, 339, 455, 827
HpyCH4III ACNGT 2 cut(s) 661, 1126
HpyCH4IV ACGT 1 cut(s) 854
HpyF10VI GCNNNNNNNGC 4 cut(s) 486, 491, 548, 992
HpyF3I CTNAG 3 cut(s) 432, 443, 531
HpySE526I ACGT 1 cut(s) 854
Hsp92I GRCGYC 1 cut(s) 91
Hsp92II CATG 2 cut(s) 397, 412
HspAI GCGC 3 cut(s) 91, 542, 1040
KasI GGCGCC 1 cut(s) 90
Kzo9I GATC 4 cut(s) 286, 502, 774, 784
Lsp1109I GCAGC 2 cut(s) 913, 1144
LweI GCATC 2 cut(s) 153, 159
MaeI CTAG 1 cut(s) 815
MaeII ACGT 1 cut(s) 854
MaeIII GTNAC 3 cut(s) 861, 1096, 1120
MalI GATC 4 cut(s) 288, 504, 776, 786
MboI GATC 4 cut(s) 286, 502, 774, 784
MboII GAAGA 5 cut(s) 71, 218, 599, 721, 998
MflI RGATCY 3 cut(s) 286, 502, 774
MhlI GDGCHC 1 cut(s) 765
MluCI AATT 9 cut(s) 23, 48, 218, 271, 322, 644, 652, 1114, 1136
Mly113I GGCGCC 1 cut(s) 91
MlyI GAGTC 1 cut(s) 894
MmeI TCCRAC 1 cut(s) 1134
MnlI CCTC 8 cut(s) 81, 223, 300, 328, 540, 715, 811, 1075
MseI TTAA 4 cut(s) 414, 641, 918, 1189
MspI CCGG 4 cut(s) 399, 719, 968, 1056
MvnI CGCG 1 cut(s) 936
MwoI GCNNNNNNNGC 4 cut(s) 486, 491, 548, 992
NarI GGCGCC 1 cut(s) 91
NdeII GATC 4 cut(s) 286, 502, 774, 784
NlaIII CATG 2 cut(s) 397, 412
NlaIV GGNNCC 4 cut(s) 92, 288, 776, 1020
NmeAIII GCCGAG 1 cut(s) 253
NmuCI GTSAC 3 cut(s) 861, 1096, 1120
NruI TCGCGA 1 cut(s) 936
NspV TTCGAA 2 cut(s) 279, 1076
PagI TCATGA 1 cut(s) 393
PfeI GAWTC 3 cut(s) 57, 605, 1073
PkrI GCNGC 2 cut(s) 928, 1159
PleI GAGTC 1 cut(s) 893
PluTI GGCGCC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 893
PshBI ATTAAT 1 cut(s) 414
PspN4I GGNNCC 4 cut(s) 92, 288, 776, 1020
PspPI GGNCC 3 cut(s) 123, 245, 581
PstI CTGCAG 1 cut(s) 1072
PsuI RGATCY 3 cut(s) 286, 502, 774
RruI TCGCGA 1 cut(s) 936
RsaI GTAC 2 cut(s) 185, 198
RsaNI GTAC 2 cut(s) 184, 197
SaqAI TTAA 4 cut(s) 414, 641, 918, 1189
SatI GCNGC 2 cut(s) 927, 1158
Sau3AI GATC 4 cut(s) 286, 502, 774, 784
Sau96I GGNCC 3 cut(s) 123, 245, 581
SchI GAGTC 1 cut(s) 894
SduI GDGCHC 1 cut(s) 765
SfaNI GCATC 2 cut(s) 153, 159
SfcI CTRYAG 2 cut(s) 330, 1068
SfoI GGCGCC 1 cut(s) 92
SfuI TTCGAA 2 cut(s) 279, 1076
SinI GGWCC 1 cut(s) 581
Sse9I AATT 9 cut(s) 23, 48, 218, 271, 322, 644, 652, 1114, 1136
SspDI GGCGCC 1 cut(s) 90
SspMI CTAG 1 cut(s) 815
TaaI ACNGT 2 cut(s) 661, 1126
TaiI ACGT 1 cut(s) 857
TaqI TCGA 4 cut(s) 279, 453, 738, 1076
TasI AATT 9 cut(s) 23, 48, 218, 271, 322, 644, 652, 1114, 1136
TatI WGTACW 2 cut(s) 183, 196
TfiI GAWTC 3 cut(s) 57, 605, 1073
Tru1I TTAA 4 cut(s) 414, 641, 918, 1189
Tru9I TTAA 4 cut(s) 414, 641, 918, 1189
TseFI GTSAC 3 cut(s) 861, 1096, 1120
TseI GCWGC 2 cut(s) 926, 1157
Tsp45I GTSAC 3 cut(s) 861, 1096, 1120
TspDTI ATGAA 4 cut(s) 49, 813, 931, 1015
TspGWI ACGGA 1 cut(s) 186
VpaK11BI GGWCC 1 cut(s) 581
VspI ATTAAT 1 cut(s) 414
XagI CCTNNNNNAGG 1 cut(s) 252
XapI RAATTY 4 cut(s) 23, 271, 644, 1136
XspI CTAG 1 cut(s) 815
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.