Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000829

Physical Location & Seq

Genomic Coordinates Reverse (-)

26352880 .. 26354569

Gene Structure 1690 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g35762.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGGGGTAACATGGCCTCCCTGCTTAGTTGTTTATGTTCTGAGCATCATCAGCTTGACGCTAAACGCAGGAGTGCAGCACACAAATGCTGCACTATCAGAAGAGACACTGAAACTGATAGCCGAGGCCAACGCGAATGGCCCTTATTTAGGCTTGGTCATTCCTAATTCTTTCGAAATGGATCCTCTCCTTCAATCTCCCAACTTCACTTCTTCTAACTTGATTATAGATTTTTCCGGAAGAAGATTTCGGTTTGGAACCATAGCTGGAAAACAGGTCGTATTAGTCATGACAGGACTCGCCATGATTAATGCAGGAATAACCACTCAGCTCTTGCTAAGCCTATTCGATATAGAAGGAGTGGTGCATTATGGCATAGCAGGCAATGCAAACCCAGATCTCCATCTTGCAGATGTGGTCATTCCTCAGTTTTCGGCGCATACTGCTCTTTGGAACTGGCAGAGATATGGAAATGGACCAGAAGATGAGCTGCCCCTTGAATCACAAGGAGACTACACCAGAGACATTGGCTACTTAAAATTTGCAAATTTTACAGTCAATGTGACAGATGGAACCTCATACGACAACCTATTGAACAATATTTGGTATCAACCGGAGGAAATCTTCCCCGTCGATGGAACTCCAGAACAAAGAGAGCATGCTTTCTGGGTCGAGGTTGATCCATTCTACTATGAAATTTCCCAAAAGCTAGAGGACATGGAACTTGAAGGTTGCCTAAACACGACAACATGTTTGTCACATACACCAAGAGTGGCAAGAGTCCAAAGGGGAACAAGTGCAAGCATTTACCTAGACAATGCTGCATACCGAGACTTCATATATGATAAGTTCAACATAACTCCGGTGGATATGGAAAGTGCTTCTGTTGCTTTAATATGTCTTCAGCAAAAGGTGCCGTTCATCGTCATCAGATCGCTTTCTGACTTGGCCGGCGGTGGCTCTGCGGATTCAAATGAGGCTGACACTTTCATCACTCTTGCTTCCAACAATTCAGTCACCGTTCTTTTGGAATTTGTCAAACACTTATCTGCTGCTACTATCTCACTGAGCAGCATCGATGTCGATGCTTATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNP_UDP_1

Protein Analysis

366

Amino Acids

40.13

Weight (kDa)

4.41

Isoelectric Point (pI)

29.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PNP_UDP_1	PF01048	51 - 347	2.5e-28	Phosphorylase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28940 AT4G28940
fragaria_vesca	FvH4_1g05530 FvH4_2g35741 FvH4_2g35750 FvH4_2g35760 FvH4_2g35761 FvH4_2g35762
malus_domestica	MD15G1095100.v1.1 MD15G1095200.v1.1 MD15G1095300.v1.1 MD15G1191300.v1.1
prunus_persica	Prupe.1G450100_v2.0.a1 Prupe.1G450200_v2.0.a1 Prupe.7G225900_v2.0.a1 Prupe.7G225900_v2.0.a1 Prupe.7G225900_v2.0.a1
pyrus_communis	pycom15g08760 pycom15g08770 pycom15g17130
rosa_chinensis	RchiOBHm_Chr1g0336711 RchiOBHm_Chr2g0091231 RchiOBHm_Chr6g0259261 RchiOBHm_Chr6g0259271 RchiOBHm_Chr6g0306011 RchiOBHm_Chr6g0306021
rosa_laevigata	RLG00000010830 RLG00000010831 RLG00000010832 RLG00000014544 RLG00000016193 RLG00000029340
rosa_multiflora	Rmu_sc0002270.1_g000016 Rmu_sc0011974.1_g000004 Rmu_sc0020534.1_g000001 Rmu_sc0035114.1_g000001 Rmu_sc0036553.1_g000001 Rmu_ssc0000050.1_g000090
rosa_roxburghii	Rroxscaffold_2G00150370 Rroxscaffold_7G00162110 Rroxscaffold_7G00162130
rosa_rugosa	Rorug02G0014600 Rorug06G0346400 Rorug06G0346600
rosa_samantha	Rh2AG060400 Rh2BG059100 Rh2CG060900 Rh2DG059700 Rh6AG103200 Rh6AG458200 Rh6AG458400 Rh6BG095600 Rh6BG442400 Rh6BG442500 Rh6BG442600 Rh6BG442700 Rh6CG092500 Rh6CG472700 Rh6CG472800 Rh6CG472900 Rh6DG086500 Rh6DG458800 Rh6DG459000 Rh6DG459100
rosa_wichuraiana	Rw2G004950 Rw6G008910 Rw6G039960 Rw6G039970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	913
AccII	CGCG	1 cut(s)	134
AccIII	TCCGGA	1 cut(s)	236
AciI	CCGC	2 cut(s)	954, 965
AclWI	GGATC	3 cut(s)	176, 189, 674
AcoI	YGGCCR	1 cut(s)	948
AcsI	RAATTY	4 cut(s)	539, 547, 696, 1031
AcuI	CTGAAG	1 cut(s)	887
AfiI	CCNNNNNNNGG	2 cut(s)	149, 635
AflIII	ACRYGT	1 cut(s)	749
AgsI	TTSAA	6 cut(s)	194, 500, 595, 728, 853, 972
AluBI	AGCT	5 cut(s)	54, 266, 331, 490, 709
AluI	AGCT	5 cut(s)	54, 266, 331, 490, 709
Alw26I	GTCTC	4 cut(s)	98, 504, 516, 825
AlwI	GGATC	3 cut(s)	176, 189, 674
Aor13HI	TCCGGA	1 cut(s)	236
AoxI	GGCC	4 cut(s)	14, 126, 139, 948
ApeKI	GCWGC	6 cut(s)	76, 89, 490, 821, 1052, 1071
ApoI	RAATTY	4 cut(s)	539, 547, 696, 1031
ArsI	GACNNNNNNTTYG	2 cut(s)	736, 768
AseI	ATTAAT	1 cut(s)	309
AspLEI	GCGC	1 cut(s)	439
AspS9I	GGNCC	2 cut(s)	140, 476
AsuHPI	GGTGA	1 cut(s)	1009
AsuII	TTCGAA	1 cut(s)	174
AvaII	GGWCC	1 cut(s)	476
BamHI	GGATCC	1 cut(s)	181
BanI	GGYRCC	1 cut(s)	913
BbsI	GAAGAC	1 cut(s)	893
BbvI	GCAGC	6 cut(s)	76, 88, 477, 808, 1039, 1083
BccI	CCATC	3 cut(s)	411, 563, 629
BceAI	ACGGC	1 cut(s)	901
BcgI	CGANNNNNNTGC	3 cut(s)	1063, 1067, 1097
BcoDI	GTCTC	4 cut(s)	98, 504, 516, 825
BfaI	CTAG	2 cut(s)	710, 812
BglII	AGATCT	1 cut(s)	397
BisI	GCNGC	6 cut(s)	77, 90, 491, 822, 1053, 1072
BlpI	GCTNAGC	1 cut(s)	338
BlsI	GCNGC	6 cut(s)	78, 91, 492, 823, 1054, 1073
Bme18I	GGWCC	1 cut(s)	476
BmgT120I	GGNCC	2 cut(s)	140, 476
BmiI	GGNNCC	4 cut(s)	183, 259, 574, 915
BmsI	GCATC	3 cut(s)	54, 1075, 1083
BpiI	GAAGAC	1 cut(s)	893
BpmI	CTGGAG	1 cut(s)	627
Bpu1102I	GCTNAGC	1 cut(s)	338
Bpu14I	TTCGAA	1 cut(s)	174
Bsa29I	ATCGAT	1 cut(s)	1077
BsaBI	GATNNNNATC	1 cut(s)	402
BsaJI	CCNNGG	1 cut(s)	123
BsaWI	WCCGGW	3 cut(s)	236, 613, 862
BsaXI	ACNNNNNCTCC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 635
Bse118I	RCCGGY	1 cut(s)	950
Bse1I	ACTGG	1 cut(s)	461
Bse3DI	GCAATG	1 cut(s)	391
Bse8I	GATNNNNATC	1 cut(s)	402
BseAI	TCCGGA	1 cut(s)	236
BseCI	ATCGAT	1 cut(s)	1077
BseDI	CCNNGG	1 cut(s)	123
BseJI	GATNNNNATC	1 cut(s)	402
BseLI	CCNNNNNNNGG	2 cut(s)	149, 635
BseMI	GCAATG	1 cut(s)	391
BseMII	CTCAG	4 cut(s)	32, 341, 440, 1058
BseNI	ACTGG	1 cut(s)	461
BseXI	GCAGC	6 cut(s)	76, 88, 477, 808, 1039, 1083
BsgI	GTGCAG	2 cut(s)	75, 95
Bsh1236I	CGCG	1 cut(s)	134
BshFI	GGCC	4 cut(s)	16, 128, 141, 950
BshNI	GGYRCC	1 cut(s)	913
BshVI	ATCGAT	1 cut(s)	1077
BsiSI	CCGG	4 cut(s)	237, 614, 863, 951
BslI	CCNNNNNNNGG	2 cut(s)	149, 635
BsmAI	GTCTC	4 cut(s)	98, 504, 516, 825
BsnI	GGCC	4 cut(s)	16, 128, 141, 950
Bsp119I	TTCGAA	1 cut(s)	174
Bsp13I	TCCGGA	1 cut(s)	236
Bsp143I	GATC	4 cut(s)	181, 397, 679, 932
Bsp1720I	GCTNAGC	1 cut(s)	338
BspACI	CCGC	2 cut(s)	954, 965
BspANI	GGCC	4 cut(s)	16, 128, 141, 950
BspCNI	CTCAG	4 cut(s)	33, 340, 439, 1059
BspDI	ATCGAT	1 cut(s)	1077
BspEI	TCCGGA	1 cut(s)	236
BspFNI	CGCG	1 cut(s)	134
BspHI	TCATGA	1 cut(s)	288
BspLI	GGNNCC	4 cut(s)	183, 259, 574, 915
BspPI	GGATC	3 cut(s)	176, 189, 674
BspT104I	TTCGAA	1 cut(s)	174
BspT107I	GGYRCC	1 cut(s)	913
BsrDI	GCAATG	1 cut(s)	391
BsrFI	RCCGGY	1 cut(s)	950
BsrI	ACTGG	1 cut(s)	461
BssAI	RCCGGY	1 cut(s)	950
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	4 cut(s)	181, 397, 679, 932
Bst4CI	ACNGT	2 cut(s)	556, 1021
Bst6I	CTCTTC	1 cut(s)	96
BstAPI	GCANNNNNTGC	2 cut(s)	386, 913
BstBI	TTCGAA	1 cut(s)	174
BstC8I	GCNNGC	4 cut(s)	382, 660, 802, 952
BstDEI	CTNAG	6 cut(s)	25, 41, 327, 338, 426, 1067
BstENI	CCTNNNNNAGG	1 cut(s)	147
BstFNI	CGCG	1 cut(s)	134
BstHHI	GCGC	1 cut(s)	439
BstKTI	GATC	4 cut(s)	184, 400, 682, 935
BstMAI	GTCTC	4 cut(s)	98, 504, 516, 825
BstMBI	GATC	4 cut(s)	181, 397, 679, 932
BstMWI	GCNNNNNNNGC	6 cut(s)	51, 381, 386, 443, 887, 913
BstNSI	RCATGY	2 cut(s)	662, 753
BstUI	CGCG	1 cut(s)	134
BstV1I	GCAGC	6 cut(s)	76, 88, 477, 808, 1039, 1083
BstV2I	GAAGAC	1 cut(s)	893
BstX2I	RGATCY	2 cut(s)	181, 397
BstYI	RGATCY	2 cut(s)	181, 397
Bsu15I	ATCGAT	1 cut(s)	1077
BsuRI	GGCC	4 cut(s)	16, 128, 141, 950
BsuTUI	ATCGAT	1 cut(s)	1077
BtsIMutI	CAGTG	2 cut(s)	107, 1064
Cac8I	GCNNGC	4 cut(s)	382, 660, 802, 952
CciI	TCATGA	1 cut(s)	288
CfoI	GCGC	1 cut(s)	439
Cfr10I	RCCGGY	1 cut(s)	950
Cfr13I	GGNCC	2 cut(s)	140, 476
ClaI	ATCGAT	1 cut(s)	1077
CseI	GACGC	1 cut(s)	67
CviAII	CATG	6 cut(s)	12, 289, 304, 659, 718, 750
DdeI	CTNAG	6 cut(s)	25, 41, 327, 338, 426, 1067
DpnI	GATC	4 cut(s)	183, 399, 681, 934
DpnII	GATC	4 cut(s)	181, 397, 679, 932
EaeI	YGGCCR	1 cut(s)	948
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	476
Eco57I	CTGAAG	1 cut(s)	887
EcoNI	CCTNNNNNAGG	1 cut(s)	147
FaeI	CATG	6 cut(s)	15, 292, 307, 662, 721, 753
FatI	CATG	6 cut(s)	11, 288, 303, 658, 717, 749
Fnu4HI	GCNGC	6 cut(s)	77, 90, 491, 822, 1053, 1072
Fsp4HI	GCNGC	6 cut(s)	77, 90, 491, 822, 1053, 1072
FspBI	CTAG	2 cut(s)	710, 812
GlaI	GCGC	1 cut(s)	438
GluI	GCNGC	6 cut(s)	77, 90, 491, 822, 1053, 1072
GsuI	CTGGAG	1 cut(s)	627
HaeIII	GGCC	4 cut(s)	16, 128, 141, 950
HapII	CCGG	4 cut(s)	237, 614, 863, 951
HgaI	GACGC	1 cut(s)	67
HhaI	GCGC	1 cut(s)	439
Hin1II	CATG	6 cut(s)	15, 292, 307, 662, 721, 753
Hin6I	GCGC	1 cut(s)	437
HinP1I	GCGC	1 cut(s)	437
HinfI	GANTC	4 cut(s)	297, 500, 780, 968
HpaII	CCGG	4 cut(s)	237, 614, 863, 951
HphI	GGTGA	1 cut(s)	1009
Hpy188I	TCNGA	4 cut(s)	42, 100, 932, 943
Hpy188III	TCNNGA	3 cut(s)	237, 289, 644
Hpy99I	CGWCG	1 cut(s)	635
HpyAV	CCTTC	3 cut(s)	200, 350, 722
HpyCH4III	ACNGT	2 cut(s)	556, 1021
HpyCH4V	TGCA	9 cut(s)	76, 92, 314, 367, 389, 410, 545, 800, 824
HpyF10VI	GCNNNNNNNGC	6 cut(s)	51, 381, 386, 443, 887, 913
HpyF3I	CTNAG	6 cut(s)	25, 41, 327, 338, 426, 1067
Hsp92II	CATG	6 cut(s)	15, 292, 307, 662, 721, 753
HspAI	GCGC	1 cut(s)	437
Kpn2I	TCCGGA	1 cut(s)	236
KroI	GCCGGC	1 cut(s)	950
KroNI	GCCGGC	1 cut(s)	952
Kzo9I	GATC	4 cut(s)	181, 397, 679, 932
Lsp1109I	GCAGC	6 cut(s)	76, 88, 477, 808, 1039, 1083
LweI	GCATC	3 cut(s)	54, 1075, 1083
MaeI	CTAG	2 cut(s)	710, 812
MaeIII	GTNAC	4 cut(s)	7, 562, 756, 1015
MalI	GATC	4 cut(s)	183, 399, 681, 934
MboI	GATC	4 cut(s)	181, 397, 679, 932
MboII	GAAGA	7 cut(s)	113, 204, 252, 255, 494, 616, 893
MflI	RGATCY	2 cut(s)	181, 397
MluCI	AATT	6 cut(s)	166, 539, 547, 696, 1009, 1031
MlyI	GAGTC	2 cut(s)	291, 789
MmeI	TCCRAC	1 cut(s)	1029
MnlI	CCTC	9 cut(s)	27, 118, 195, 435, 586, 610, 667, 706, 970
MroI	TCCGGA	1 cut(s)	236
MroNI	GCCGGC	1 cut(s)	950
MseI	TTAA	4 cut(s)	309, 536, 893, 1096
MslI	CAYNNNNRTG	1 cut(s)	84
MspI	CCGG	4 cut(s)	237, 614, 863, 951
MvnI	CGCG	1 cut(s)	134
MwoI	GCNNNNNNNGC	6 cut(s)	51, 381, 386, 443, 887, 913
NaeI	GCCGGC	1 cut(s)	952
NdeII	GATC	4 cut(s)	181, 397, 679, 932
NgoMIV	GCCGGC	1 cut(s)	950
NlaIII	CATG	6 cut(s)	15, 292, 307, 662, 721, 753
NlaIV	GGNNCC	4 cut(s)	183, 259, 574, 915
NmeAIII	GCCGAG	1 cut(s)	148
NmuCI	GTSAC	3 cut(s)	562, 756, 1015
NspI	RCATGY	2 cut(s)	662, 753
NspV	TTCGAA	1 cut(s)	174
PaeI	GCATGC	1 cut(s)	662
PagI	TCATGA	1 cut(s)	288
PciI	ACATGT	1 cut(s)	749
PdiI	GCCGGC	1 cut(s)	952
PfeI	GAWTC	2 cut(s)	500, 968
PkrI	GCNGC	6 cut(s)	78, 91, 492, 823, 1054, 1073
PleI	GAGTC	2 cut(s)	291, 788
PpsI	GAGTC	2 cut(s)	291, 788
PscI	ACATGT	1 cut(s)	749
PshBI	ATTAAT	1 cut(s)	309
PspN4I	GGNNCC	4 cut(s)	183, 259, 574, 915
PspPI	GGNCC	2 cut(s)	140, 476
PsuI	RGATCY	2 cut(s)	181, 397
RseI	CAYNNNNRTG	1 cut(s)	84
SaqAI	TTAA	4 cut(s)	309, 536, 893, 1096
SatI	GCNGC	6 cut(s)	77, 90, 491, 822, 1053, 1072
Sau3AI	GATC	4 cut(s)	181, 397, 679, 932
Sau96I	GGNCC	2 cut(s)	140, 476
SchI	GAGTC	2 cut(s)	291, 789
SfaNI	GCATC	3 cut(s)	54, 1075, 1083
SfuI	TTCGAA	1 cut(s)	174
SinI	GGWCC	1 cut(s)	476
SmiMI	CAYNNNNRTG	1 cut(s)	84
SphI	GCATGC	1 cut(s)	662
Sse9I	AATT	6 cut(s)	166, 539, 547, 696, 1009, 1031
SsiI	CCGC	2 cut(s)	954, 965
SspI	AATATT	1 cut(s)	601
SspMI	CTAG	2 cut(s)	710, 812
TaaI	ACNGT	2 cut(s)	556, 1021
TaqI	TCGA	6 cut(s)	174, 348, 633, 672, 1077, 1083
TasI	AATT	6 cut(s)	166, 539, 547, 696, 1009, 1031
TfiI	GAWTC	2 cut(s)	500, 968
Tru1I	TTAA	4 cut(s)	309, 536, 893, 1096
Tru9I	TTAA	4 cut(s)	309, 536, 893, 1096
TscAI	CASTG	2 cut(s)	114, 1071
TseFI	GTSAC	3 cut(s)	562, 756, 1015
TseI	GCWGC	6 cut(s)	76, 89, 490, 821, 1052, 1071
Tsp45I	GTSAC	3 cut(s)	562, 756, 1015
TspDTI	ATGAA	4 cut(s)	708, 826, 910, 979
TspRI	CASTG	2 cut(s)	114, 1071
VpaK11BI	GGWCC	1 cut(s)	476
VspI	ATTAAT	1 cut(s)	309
XagI	CCTNNNNNAGG	1 cut(s)	147
XapI	RAATTY	4 cut(s)	539, 547, 696, 1031
XceI	RCATGY	2 cut(s)	662, 753
XspI	CTAG	2 cut(s)	710, 812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.