Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000829

Physical Location & Seq

Genomic Coordinates Reverse (-)

4758290 .. 4760616

Gene Structure 2327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00162130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGGGGTTGCTTGGCCCTGCGTAGTTGTTTATGCTGTGAGCATCAGCTTGATGATGCTCAACGGAGTAGTGCAGCACACAAATGCTGTACTATCTGAAGAAACATTGGAATTGATAGCCGAGGCCAACAAGAATGGCCCTTATTTAGGCTTGGTCATTCCAAATTCTTTCGAAATGGATCCTCTCCTTCGATCTCCGAACTTCACTTCCTCTAATTTGACTATAGATTTTTCTGGAAGGAGATTTCGGGTTGGAACGATTGCTGAAAAAAAAGTCATATTAGTCATGACCGGACTTGCCATGATTAATGCAGGAATAACCACTCAGCTCTTGCTAAGCCTATTCGATATAGAAGGGGTGGTGCATTATGGCATAGCTGGCAATGCAAACCCAGATTTCCATCTTGCAGATGTGGTCATTCCTCAGTATTGGGCGCATACTGCTCTTTGGAACTGGCAGAGATATGGAAATGGACCAGAAGATGAGCTACCCCTTGAATCACAAGGAGACTACACCAGAGACATTGGCTACTTAAAATTTGCAAATTATACAGTCAATATGACAGATAGAAGCTCATACGACAACCTGTTGAACAATATCTGGTATCAACCGGAGGAAGTCTTCCCCGTCGATGGAACTCCAGAACAAAGAGAGCACGCCTTTTGGATCCCTGTTGATCCATTCTACTATGAAGTTTCCCAAAAGCTAGAGGATGTGATACTGGAAGGTTGCCTAAACTCAACGACGTGTTTGTCACATACACCAAGAGTGGCTAGAGTCCAAAGGGGAACAAGTGCAAGCATTTATCTTGACAATGCTGCATATCGCGACTTCATATATGATAAGTTCAACATAACTCCGGTGGATATGGAAAGTGCTTCTGTTGCTTTGATATGTCTTCAACAAAAGGTGCCTTTCATTGTCATCAGAGCGCTCTCTGACTTGGCCGGTGGTGGCTCTGCAGATTCGAATGAGGCTGACACTTTCGTCACTCTTGCTTCCAACAATTCAGTCACAGTTCTTTTGGAATTTGTGAAACACTTATCTGCTGCTACTATCTCACTGAGCAACATCAATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNP_UDP_1

Protein Analysis

360

Amino Acids

39.89

Weight (kDa)

4.62

Isoelectric Point (pI)

30.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PNP_UDP_1	PF01048	50 - 346	1.4e-28	Phosphorylase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28940 AT4G28940
fragaria_vesca	FvH4_1g05530 FvH4_2g35741 FvH4_2g35750 FvH4_2g35760 FvH4_2g35761 FvH4_2g35762
malus_domestica	MD15G1095100.v1.1 MD15G1095200.v1.1 MD15G1095300.v1.1 MD15G1191300.v1.1
prunus_persica	Prupe.1G450100_v2.0.a1 Prupe.1G450200_v2.0.a1 Prupe.7G225900_v2.0.a1 Prupe.7G225900_v2.0.a1 Prupe.7G225900_v2.0.a1
pyrus_communis	pycom15g08760 pycom15g08770 pycom15g17130
rosa_chinensis	RchiOBHm_Chr1g0336711 RchiOBHm_Chr2g0091231 RchiOBHm_Chr6g0259261 RchiOBHm_Chr6g0259271 RchiOBHm_Chr6g0306011 RchiOBHm_Chr6g0306021
rosa_laevigata	RLG00000010830 RLG00000010831 RLG00000010832 RLG00000014544 RLG00000016193 RLG00000029340
rosa_multiflora	Rmu_sc0002270.1_g000016 Rmu_sc0011974.1_g000004 Rmu_sc0020534.1_g000001 Rmu_sc0035114.1_g000001 Rmu_sc0036553.1_g000001 Rmu_ssc0000050.1_g000090
rosa_roxburghii	Rroxscaffold_2G00150370 Rroxscaffold_7G00162110 Rroxscaffold_7G00162130
rosa_rugosa	Rorug02G0014600 Rorug06G0346400 Rorug06G0346600
rosa_samantha	Rh2AG060400 Rh2BG059100 Rh2CG060900 Rh2DG059700 Rh6AG103200 Rh6AG458200 Rh6AG458400 Rh6BG095600 Rh6BG442400 Rh6BG442500 Rh6BG442600 Rh6BG442700 Rh6CG092500 Rh6CG472700 Rh6CG472800 Rh6CG472900 Rh6DG086500 Rh6DG458800 Rh6DG459000 Rh6DG459100
rosa_wichuraiana	Rw2G004950 Rw6G008910 Rw6G039960 Rw6G039970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	751, 986
AccB1I	GGYRCC	1 cut(s)	910
AccII	CGCG	1 cut(s)	828
AclWI	GGATC	5 cut(s)	173, 186, 661, 671, 674
AcoI	YGGCCR	1 cut(s)	945
AcsI	RAATTY	3 cut(s)	163, 536, 1028
AcuI	CTGAAG	1 cut(s)	117
AfaI	GTAC	1 cut(s)	90
AfeI	AGCGCT	1 cut(s)	933
AfiI	CCNNNNNNNGG	2 cut(s)	146, 632
AflIII	ACRYGT	1 cut(s)	746
AgsI	TTSAA	4 cut(s)	497, 592, 850, 902
AjiI	CACGTC	1 cut(s)	747
AloI	GAACNNNNNNTCC	2 cut(s)	191, 223
AluBI	AGCT	6 cut(s)	48, 328, 377, 487, 573, 706
AluI	AGCT	6 cut(s)	48, 328, 377, 487, 573, 706
Alw21I	GWGCWC	1 cut(s)	657
Alw26I	GTCTC	2 cut(s)	501, 513
AlwI	GGATC	5 cut(s)	173, 186, 661, 671, 674
Aor51HI	AGCGCT	1 cut(s)	933
AoxI	GGCC	4 cut(s)	14, 123, 136, 945
ApeKI	GCWGC	3 cut(s)	73, 818, 1049
ApoI	RAATTY	3 cut(s)	163, 536, 1028
AseI	ATTAAT	1 cut(s)	306
AspLEI	GCGC	2 cut(s)	436, 934
AspS9I	GGNCC	3 cut(s)	15, 137, 473
AsuII	TTCGAA	2 cut(s)	171, 968
AvaII	GGWCC	1 cut(s)	473
BamHI	GGATCC	2 cut(s)	178, 666
BanI	GGYRCC	1 cut(s)	910
BarI	GAAGNNNNNNTAC	2 cut(s)	471, 503
BbsI	GAAGAC	2 cut(s)	613, 890
Bbv12I	GWGCWC	1 cut(s)	657
BbvI	GCAGC	3 cut(s)	85, 805, 1036
BccI	CCATC	2 cut(s)	408, 626
BcoDI	GTCTC	2 cut(s)	501, 513
BfaI	CTAG	2 cut(s)	707, 774
BfmI	CTRYAG	2 cut(s)	222, 960
BfoI	RGCGCY	1 cut(s)	935
BisI	GCNGC	3 cut(s)	74, 819, 1050
BlpI	GCTNAGC	1 cut(s)	335
BlsI	GCNGC	3 cut(s)	75, 820, 1051
Bme18I	GGWCC	1 cut(s)	473
BmgBI	CACGTC	1 cut(s)	747
BmgT120I	GGNCC	3 cut(s)	15, 137, 473
BmiI	GGNNCC	3 cut(s)	180, 668, 912
BmsI	GCATC	2 cut(s)	45, 51
BpiI	GAAGAC	2 cut(s)	613, 890
BpmI	CTGGAG	1 cut(s)	624
Bpu1102I	GCTNAGC	1 cut(s)	335
Bpu14I	TTCGAA	2 cut(s)	171, 968
BsaBI	GATNNNNATC	1 cut(s)	399
BsaJI	CCNNGG	1 cut(s)	120
BsaWI	WCCGGW	3 cut(s)	290, 610, 859
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 632
Bse118I	RCCGGY	1 cut(s)	947
Bse1I	ACTGG	2 cut(s)	458, 726
Bse3DI	GCAATG	1 cut(s)	388
Bse8I	GATNNNNATC	1 cut(s)	399
BseDI	CCNNGG	1 cut(s)	120
BseGI	GGATG	1 cut(s)	718
BseJI	GATNNNNATC	1 cut(s)	399
BseLI	CCNNNNNNNGG	2 cut(s)	146, 632
BseMI	GCAATG	1 cut(s)	388
BseMII	CTCAG	3 cut(s)	338, 437, 1055
BseNI	ACTGG	2 cut(s)	458, 726
BseXI	GCAGC	3 cut(s)	85, 805, 1036
BsgI	GTGCAG	1 cut(s)	92
Bsh1236I	CGCG	1 cut(s)	828
BshFI	GGCC	4 cut(s)	16, 125, 138, 947
BshNI	GGYRCC	1 cut(s)	910
BsiHKAI	GWGCWC	1 cut(s)	657
BsiSI	CCGG	4 cut(s)	291, 611, 860, 948
BslI	CCNNNNNNNGG	2 cut(s)	146, 632
BsmAI	GTCTC	2 cut(s)	501, 513
BsnI	GGCC	4 cut(s)	16, 125, 138, 947
Bsp119I	TTCGAA	2 cut(s)	171, 968
Bsp1286I	GDGCHC	1 cut(s)	657
Bsp143I	GATC	4 cut(s)	178, 191, 666, 676
Bsp1720I	GCTNAGC	1 cut(s)	335
Bsp68I	TCGCGA	1 cut(s)	828
BspANI	GGCC	4 cut(s)	16, 125, 138, 947
BspCNI	CTCAG	3 cut(s)	337, 436, 1056
BspFNI	CGCG	1 cut(s)	828
BspHI	TCATGA	1 cut(s)	285
BspLI	GGNNCC	3 cut(s)	180, 668, 912
BspMAI	CTGCAG	1 cut(s)	964
BspPI	GGATC	5 cut(s)	173, 186, 661, 671, 674
BspT104I	TTCGAA	2 cut(s)	171, 968
BspT107I	GGYRCC	1 cut(s)	910
BsrDI	GCAATG	1 cut(s)	388
BsrFI	RCCGGY	1 cut(s)	947
BsrI	ACTGG	2 cut(s)	458, 726
BssAI	RCCGGY	1 cut(s)	947
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	4 cut(s)	178, 191, 666, 676
Bst4CI	ACNGT	2 cut(s)	553, 1018
BstBI	TTCGAA	2 cut(s)	171, 968
BstC8I	GCNNGC	3 cut(s)	379, 657, 799
BstDEI	CTNAG	4 cut(s)	324, 335, 423, 1064
BstENI	CCTNNNNNAGG	1 cut(s)	144
BstF5I	GGATG	1 cut(s)	718
BstFNI	CGCG	1 cut(s)	828
BstH2I	RGCGCY	1 cut(s)	935
BstHHI	GCGC	2 cut(s)	436, 934
BstKTI	GATC	4 cut(s)	181, 194, 669, 679
BstMAI	GTCTC	2 cut(s)	501, 513
BstMBI	GATC	4 cut(s)	178, 191, 666, 676
BstMWI	GCNNNNNNNGC	4 cut(s)	378, 383, 440, 884
BstSFI	CTRYAG	2 cut(s)	222, 960
BstUI	CGCG	1 cut(s)	828
BstV1I	GCAGC	3 cut(s)	85, 805, 1036
BstV2I	GAAGAC	2 cut(s)	613, 890
BstX2I	RGATCY	2 cut(s)	178, 666
BstYI	RGATCY	2 cut(s)	178, 666
BsuRI	GGCC	4 cut(s)	16, 125, 138, 947
BtrI	CACGTC	1 cut(s)	747
BtsCI	GGATG	1 cut(s)	718
BtsIMutI	CAGTG	1 cut(s)	1061
BtuMI	TCGCGA	1 cut(s)	828
Cac8I	GCNNGC	3 cut(s)	379, 657, 799
CciI	TCATGA	1 cut(s)	285
CfoI	GCGC	2 cut(s)	436, 934
Cfr10I	RCCGGY	1 cut(s)	947
Cfr13I	GGNCC	3 cut(s)	15, 137, 473
Csp6I	GTAC	1 cut(s)	89
CviAII	CATG	2 cut(s)	286, 301
CviQI	GTAC	1 cut(s)	89
DdeI	CTNAG	4 cut(s)	324, 335, 423, 1064
DpnI	GATC	4 cut(s)	180, 193, 668, 678
DpnII	GATC	4 cut(s)	178, 191, 666, 676
DrdI	GACNNNNNNGTC	2 cut(s)	751, 986
DseDI	GACNNNNNNGTC	2 cut(s)	751, 986
EaeI	YGGCCR	1 cut(s)	945
Eco47I	GGWCC	1 cut(s)	473
Eco47III	AGCGCT	1 cut(s)	933
Eco57I	CTGAAG	1 cut(s)	117
EcoNI	CCTNNNNNAGG	1 cut(s)	144
FaeI	CATG	2 cut(s)	289, 304
FatI	CATG	2 cut(s)	285, 300
Fnu4HI	GCNGC	3 cut(s)	74, 819, 1050
FokI	GGATG	1 cut(s)	725
Fsp4HI	GCNGC	3 cut(s)	74, 819, 1050
FspBI	CTAG	2 cut(s)	707, 774
GlaI	GCGC	2 cut(s)	435, 933
GluI	GCNGC	3 cut(s)	74, 819, 1050
GsuI	CTGGAG	1 cut(s)	624
HaeII	RGCGCY	1 cut(s)	935
HaeIII	GGCC	4 cut(s)	16, 125, 138, 947
HapII	CCGG	4 cut(s)	291, 611, 860, 948
HhaI	GCGC	2 cut(s)	436, 934
Hin1II	CATG	2 cut(s)	289, 304
Hin6I	GCGC	2 cut(s)	434, 932
HinP1I	GCGC	2 cut(s)	434, 932
HinfI	GANTC	3 cut(s)	497, 777, 965
HpaII	CCGG	4 cut(s)	291, 611, 860, 948
Hpy188I	TCNGA	4 cut(s)	97, 198, 929, 940
Hpy188III	TCNNGA	5 cut(s)	234, 286, 641, 809, 827
Hpy99I	CGWCG	2 cut(s)	632, 748
HpyAV	CCTTC	4 cut(s)	197, 231, 347, 719
HpyCH4III	ACNGT	2 cut(s)	553, 1018
HpyCH4IV	ACGT	1 cut(s)	746
HpyCH4V	TGCA	9 cut(s)	73, 311, 364, 386, 407, 542, 797, 821, 962
HpyF10VI	GCNNNNNNNGC	4 cut(s)	378, 383, 440, 884
HpyF3I	CTNAG	4 cut(s)	324, 335, 423, 1064
HpySE526I	ACGT	1 cut(s)	746
Hsp92II	CATG	2 cut(s)	289, 304
HspAI	GCGC	2 cut(s)	434, 932
Kzo9I	GATC	4 cut(s)	178, 191, 666, 676
Lsp1109I	GCAGC	3 cut(s)	85, 805, 1036
LweI	GCATC	2 cut(s)	45, 51
MaeI	CTAG	2 cut(s)	707, 774
MaeII	ACGT	1 cut(s)	746
MaeIII	GTNAC	3 cut(s)	753, 988, 1012
MalI	GATC	4 cut(s)	180, 193, 668, 678
MboI	GATC	4 cut(s)	178, 191, 666, 676
MboII	GAAGA	4 cut(s)	110, 491, 613, 890
MflI	RGATCY	2 cut(s)	178, 666
MhlI	GDGCHC	1 cut(s)	657
MluCI	AATT	7 cut(s)	110, 163, 214, 536, 544, 1006, 1028
MlyI	GAGTC	1 cut(s)	786
MmeI	TCCRAC	2 cut(s)	232, 1026
MnlI	CCTC	7 cut(s)	115, 192, 220, 432, 607, 703, 967
MseI	TTAA	3 cut(s)	306, 533, 1081
MslI	CAYNNNNRTG	1 cut(s)	81
MspI	CCGG	4 cut(s)	291, 611, 860, 948
MvnI	CGCG	1 cut(s)	828
MwoI	GCNNNNNNNGC	4 cut(s)	378, 383, 440, 884
NdeII	GATC	4 cut(s)	178, 191, 666, 676
NlaIII	CATG	2 cut(s)	289, 304
NlaIV	GGNNCC	3 cut(s)	180, 668, 912
NmeAIII	GCCGAG	1 cut(s)	145
NmuCI	GTSAC	3 cut(s)	753, 988, 1012
NruI	TCGCGA	1 cut(s)	828
NspV	TTCGAA	2 cut(s)	171, 968
PagI	TCATGA	1 cut(s)	285
PfeI	GAWTC	2 cut(s)	497, 965
PkrI	GCNGC	3 cut(s)	75, 820, 1051
PleI	GAGTC	1 cut(s)	785
PpsI	GAGTC	1 cut(s)	785
PshBI	ATTAAT	1 cut(s)	306
PspN4I	GGNNCC	3 cut(s)	180, 668, 912
PspPI	GGNCC	3 cut(s)	15, 137, 473
PstI	CTGCAG	1 cut(s)	964
PsuI	RGATCY	2 cut(s)	178, 666
RruI	TCGCGA	1 cut(s)	828
RsaI	GTAC	1 cut(s)	90
RsaNI	GTAC	1 cut(s)	89
RseI	CAYNNNNRTG	1 cut(s)	81
SaqAI	TTAA	3 cut(s)	306, 533, 1081
SatI	GCNGC	3 cut(s)	74, 819, 1050
Sau3AI	GATC	4 cut(s)	178, 191, 666, 676
Sau96I	GGNCC	3 cut(s)	15, 137, 473
SchI	GAGTC	1 cut(s)	786
SduI	GDGCHC	1 cut(s)	657
SfaNI	GCATC	2 cut(s)	45, 51
SfcI	CTRYAG	2 cut(s)	222, 960
SfuI	TTCGAA	2 cut(s)	171, 968
SinI	GGWCC	1 cut(s)	473
SmiMI	CAYNNNNRTG	1 cut(s)	81
Sse9I	AATT	7 cut(s)	110, 163, 214, 536, 544, 1006, 1028
SspMI	CTAG	2 cut(s)	707, 774
TaaI	ACNGT	2 cut(s)	553, 1018
TaiI	ACGT	1 cut(s)	749
TaqI	TCGA	5 cut(s)	171, 190, 345, 630, 968
TasI	AATT	7 cut(s)	110, 163, 214, 536, 544, 1006, 1028
TatI	WGTACW	1 cut(s)	88
TfiI	GAWTC	2 cut(s)	497, 965
Tru1I	TTAA	3 cut(s)	306, 533, 1081
Tru9I	TTAA	3 cut(s)	306, 533, 1081
TscAI	CASTG	1 cut(s)	1068
TseFI	GTSAC	3 cut(s)	753, 988, 1012
TseI	GCWGC	3 cut(s)	73, 818, 1049
Tsp45I	GTSAC	3 cut(s)	753, 988, 1012
TspDTI	ATGAA	3 cut(s)	705, 823, 907
TspGWI	ACGGA	1 cut(s)	78
TspRI	CASTG	1 cut(s)	1068
VpaK11BI	GGWCC	1 cut(s)	473
VspI	ATTAAT	1 cut(s)	306
XagI	CCTNNNNNAGG	1 cut(s)	144
XapI	RAATTY	3 cut(s)	163, 536, 1028
XspI	CTAG	2 cut(s)	707, 774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.