Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0000829

Physical Location & Seq

Genomic Coordinates Forward (+)

20026733 .. 20028770

Gene Structure 2038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G225900.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGGGAGCCATTTGAGGATGGAGTTAATGGTTTTTCTTGTATTGGTTTTTTTGGGGATTAGCAGCATAGCCTATGGTGCAGTTTCCCACACTACCATGAGAAAGATTGATATGTTAAATAAAAAGGGTCCATATTTGGGAATTGTGGTGCCAAATTTCTTTGAGCTGAACCCTCTTCTTCAATCCACAAGCTTTGTGGCTGATCAGAAGCTTCCCTACTTAGATTTTTCTGGAAGAAGGTTTCGAATTGGACGGTTGGAAGACGAAAGTGTTATAATTGTTATGACAGGATTGAGCATGCTTAATGCAGGTATCTCAACTCAATTACTGCTAAGCCTGTTCAAGGTGAAAGGTGTTGTGCACTATGGAATTGCAGGAAATGCAGATCCTCAACTCCAAATTGGAGATGTTACTATCCCTCAATTTTGGGCTCATACAGGCCTTTGGAATTGGCAGAGGTTTGGAGATGGGCCCGGTAATGAGTTGTCCTTAGAATCATTTGGAGATTACACAAGAAAAGTTGGTCACATAAAATTTTCTGATTTCAACAACGAAACCAGAAATGGCAAGTCTGTTCCCAATCTTCTGAACAATGTATGGTATCAACCAGAAGAGGTCTTCCCAGTTCATGGCACTCCTGAAGTTAGGCAACATGCCTTCTGGGTTCCAGTCAACCCTAAGTTTTTTGCAGTTGCCAAGGACCTAGAGGATTTGAAGTTGGGGGGTTGTGTGAATACAACTTGTCTGCCAAGAGCACCCATTGTGGTGAGGGTCAAAAGGGGCATAAGTGCAAGTGTGTTTGTTGACAACAGAGCATACAGAGAATTCTTGAACTCCAAATTCAATGCCACTTCCATTGACATGGAAAGTGCTGCAGTGGCTTTGGTCTGTCACCAACAGAAGAAGCCCTTTATTGTAATTAGAGCTCTCTCTGATTTGGCTGGTGGAGGCTCCTCTCTCTCCAATGAAGCCAACACCTTTGCATCTTTGGCTGCTCAAAATGCAGTTGATGTTGTGCTTAGATTCATTTCCTTGCTGTCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNP_UDP_1

Protein Analysis

349

Amino Acids

38.47

Weight (kDa)

8.9

Isoelectric Point (pI)

23.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28940 AT4G28940
fragaria_vesca	FvH4_1g05530 FvH4_2g35741 FvH4_2g35750 FvH4_2g35760 FvH4_2g35761 FvH4_2g35762
malus_domestica	MD15G1095100.v1.1 MD15G1095200.v1.1 MD15G1095300.v1.1 MD15G1191300.v1.1
prunus_persica	Prupe.1G450100_v2.0.a1 Prupe.1G450200_v2.0.a1 Prupe.7G225900_v2.0.a1 Prupe.7G225900_v2.0.a1 Prupe.7G225900_v2.0.a1
pyrus_communis	pycom15g08760 pycom15g08770 pycom15g17130
rosa_chinensis	RchiOBHm_Chr1g0336711 RchiOBHm_Chr2g0091231 RchiOBHm_Chr6g0259261 RchiOBHm_Chr6g0259271 RchiOBHm_Chr6g0306011 RchiOBHm_Chr6g0306021
rosa_laevigata	RLG00000010830 RLG00000010831 RLG00000010832 RLG00000014544 RLG00000016193 RLG00000029340
rosa_multiflora	Rmu_sc0002270.1_g000016 Rmu_sc0011974.1_g000004 Rmu_sc0020534.1_g000001 Rmu_sc0035114.1_g000001 Rmu_sc0036553.1_g000001 Rmu_ssc0000050.1_g000090
rosa_roxburghii	Rroxscaffold_2G00150370 Rroxscaffold_7G00162110 Rroxscaffold_7G00162130
rosa_rugosa	Rorug02G0014600 Rorug06G0346400 Rorug06G0346600
rosa_samantha	Rh2AG060400 Rh2BG059100 Rh2CG060900 Rh2DG059700 Rh6AG103200 Rh6AG458200 Rh6AG458400 Rh6BG095600 Rh6BG442400 Rh6BG442500 Rh6BG442600 Rh6BG442700 Rh6CG092500 Rh6CG472700 Rh6CG472800 Rh6CG472900 Rh6DG086500 Rh6DG458800 Rh6DG459000 Rh6DG459100
rosa_wichuraiana	Rw2G004950 Rw6G008910 Rw6G039960 Rw6G039970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	275
Acc36I	ACCTGC	1 cut(s)	299
AccB1I	GGYRCC	1 cut(s)	148
AccB7I	CCANNNNNTGG	1 cut(s)	629
AclWI	GGATC	1 cut(s)	380
AcsI	RAATTY	4 cut(s)	154, 533, 824, 839
AcuI	CTGAAG	1 cut(s)	660
AfiI	CCNNNNNNNGG	3 cut(s)	137, 343, 629
AgsI	TTSAA	6 cut(s)	182, 343, 547, 715, 832, 844
AluBI	AGCT	4 cut(s)	166, 192, 211, 926
AluI	AGCT	4 cut(s)	166, 192, 211, 926
Alw21I	GWGCWC	3 cut(s)	363, 757, 928
Alw44I	GTGCAC	1 cut(s)	359
AlwI	GGATC	1 cut(s)	380
AoxI	GGCC	2 cut(s)	439, 470
ApaI	GGGCCC	1 cut(s)	474
ApaLI	GTGCAC	1 cut(s)	359
ApeKI	GCWGC	3 cut(s)	63, 872, 992
ApoI	RAATTY	4 cut(s)	154, 533, 824, 839
AspS9I	GGNCC	4 cut(s)	128, 470, 471, 700
AsuC2I	CCSGG	1 cut(s)	474
AsuHPI	GGTGA	3 cut(s)	358, 778, 884
AsuII	TTCGAA	1 cut(s)	244
AvaII	GGWCC	2 cut(s)	128, 700
BaeGI	GKGCMC	2 cut(s)	363, 474
BanI	GGYRCC	1 cut(s)	148
BanII	GRGCYC	3 cut(s)	433, 474, 928
BarI	GAAGNNNNNNTAC	2 cut(s)	200, 232
BbsI	GAAGAC	3 cut(s)	267, 610, 1032
Bbv12I	GWGCWC	3 cut(s)	363, 757, 928
BbvI	GCAGC	3 cut(s)	75, 859, 979
BccI	CCATC	2 cut(s)	13, 461
BclI	TGATCA	1 cut(s)	202
BcnI	CCSGG	1 cut(s)	474
BfaI	CTAG	1 cut(s)	704
BfmI	CTRYAG	1 cut(s)	873
BfuAI	ACCTGC	1 cut(s)	299
BisI	GCNGC	3 cut(s)	64, 873, 993
BlpI	GCTNAGC	1 cut(s)	332
BlsI	GCNGC	3 cut(s)	65, 874, 994
Bme1390I	CCNGG	1 cut(s)	474
Bme18I	GGWCC	2 cut(s)	128, 700
BmgT120I	GGNCC	4 cut(s)	128, 470, 471, 700
BmiI	GGNNCC	6 cut(s)	8, 129, 150, 472, 666, 952
BmrFI	CCNGG	1 cut(s)	474
BmrI	ACTGGG	1 cut(s)	617
BmsI	GCATC	1 cut(s)	992
BmuI	ACTGGG	1 cut(s)	617
BpiI	GAAGAC	3 cut(s)	267, 610, 1032
Bpu1102I	GCTNAGC	1 cut(s)	332
Bpu14I	TTCGAA	1 cut(s)	244
BpuMI	CCSGG	1 cut(s)	474
BsaJI	CCNNGG	1 cut(s)	696
Bsc4I	CCNNNNNNNGG	3 cut(s)	137, 343, 629
Bse1I	ACTGG	2 cut(s)	623, 668
BseDI	CCNNGG	1 cut(s)	696
BseGI	GGATG	1 cut(s)	24
BseLI	CCNNNNNNNGG	3 cut(s)	137, 343, 629
BseNI	ACTGG	2 cut(s)	623, 668
BseRI	GAGGAG	1 cut(s)	943
BseSI	GKGCMC	2 cut(s)	363, 474
BseXI	GCAGC	3 cut(s)	75, 859, 979
BsgI	GTGCAG	1 cut(s)	99
BshFI	GGCC	2 cut(s)	441, 472
BshNI	GGYRCC	1 cut(s)	148
BsiHKAI	GWGCWC	3 cut(s)	363, 757, 928
BsiSI	CCGG	1 cut(s)	474
BslI	CCNNNNNNNGG	3 cut(s)	137, 343, 629
BsnI	GGCC	2 cut(s)	441, 472
Bsp119I	TTCGAA	1 cut(s)	244
Bsp120I	GGGCCC	1 cut(s)	470
Bsp1286I	GDGCHC	5 cut(s)	363, 433, 474, 757, 928
Bsp143I	GATC	2 cut(s)	202, 385
Bsp1720I	GCTNAGC	1 cut(s)	332
BspANI	GGCC	2 cut(s)	441, 472
BspLI	GGNNCC	6 cut(s)	8, 129, 150, 472, 666, 952
BspMAI	CTGCAG	1 cut(s)	877
BspMI	ACCTGC	1 cut(s)	299
BspPI	GGATC	1 cut(s)	380
BspT104I	TTCGAA	1 cut(s)	244
BspT107I	GGYRCC	1 cut(s)	148
BsrI	ACTGG	2 cut(s)	623, 668
BssECI	CCNNGG	1 cut(s)	696
BssMI	GATC	2 cut(s)	202, 385
BssT1I	CCWWGG	1 cut(s)	696
Bst4CI	ACNGT	1 cut(s)	255
Bst6I	CTCTTC	2 cut(s)	180, 606
BstAPI	GCANNNNNTGC	1 cut(s)	380
BstBI	TTCGAA	1 cut(s)	244
BstC8I	GCNNGC	1 cut(s)	299
BstDEI	CTNAG	5 cut(s)	220, 332, 490, 678, 1019
BstENI	CCTNNNNNAGG	1 cut(s)	341
BstF5I	GGATG	1 cut(s)	24
BstKTI	GATC	2 cut(s)	205, 388
BstMBI	GATC	2 cut(s)	202, 385
BstMWI	GCNNNNNNNGC	5 cut(s)	77, 380, 878, 989, 1001
BstNSI	RCATGY	2 cut(s)	301, 656
BstSCI	CCNGG	1 cut(s)	472
BstSFI	CTRYAG	1 cut(s)	873
BstSLI	GKGCMC	2 cut(s)	363, 474
BstV1I	GCAGC	3 cut(s)	75, 859, 979
BstV2I	GAAGAC	3 cut(s)	267, 610, 1032
BstX2I	RGATCY	1 cut(s)	385
BstXI	CCANNNNNNTGG	1 cut(s)	862
BstYI	RGATCY	1 cut(s)	385
BsuRI	GGCC	2 cut(s)	441, 472
BtsCI	GGATG	1 cut(s)	24
BtsI	GCAGTG	1 cut(s)	882
BtsIMutI	CAGTG	1 cut(s)	882
BveI	ACCTGC	1 cut(s)	299
Cac8I	GCNNGC	1 cut(s)	299
Cfr13I	GGNCC	4 cut(s)	128, 470, 471, 700
CspCI	CAANNNNNGTGG	6 cut(s)	175, 177, 210, 212, 838, 873
CviAII	CATG	5 cut(s)	97, 298, 629, 653, 862
DdeI	CTNAG	5 cut(s)	220, 332, 490, 678, 1019
DpnI	GATC	2 cut(s)	204, 387
DpnII	GATC	2 cut(s)	202, 385
Eam1104I	CTCTTC	2 cut(s)	180, 606
EarI	CTCTTC	2 cut(s)	180, 606
Ecl136II	GAGCTC	1 cut(s)	926
Eco130I	CCWWGG	1 cut(s)	696
Eco147I	AGGCCT	1 cut(s)	441
Eco24I	GRGCYC	3 cut(s)	433, 474, 928
Eco47I	GGWCC	2 cut(s)	128, 700
Eco53kI	GAGCTC	1 cut(s)	926
Eco57I	CTGAAG	1 cut(s)	660
EcoICRI	GAGCTC	1 cut(s)	926
EcoNI	CCTNNNNNAGG	1 cut(s)	341
EcoO109I	RGGNCCY	1 cut(s)	700
EcoRI	GAATTC	1 cut(s)	824
EcoT14I	CCWWGG	1 cut(s)	696
EcoT38I	GRGCYC	3 cut(s)	433, 474, 928
ErhI	CCWWGG	1 cut(s)	696
FaeI	CATG	5 cut(s)	100, 301, 632, 656, 865
FalI	AAGNNNNNCTT	2 cut(s)	893, 925
FatI	CATG	5 cut(s)	96, 297, 628, 652, 861
FbaI	TGATCA	1 cut(s)	202
Fnu4HI	GCNGC	3 cut(s)	64, 873, 993
FokI	GGATG	1 cut(s)	31
FriOI	GRGCYC	3 cut(s)	433, 474, 928
Fsp4HI	GCNGC	3 cut(s)	64, 873, 993
FspBI	CTAG	1 cut(s)	704
GluI	GCNGC	3 cut(s)	64, 873, 993
HaeIII	GGCC	2 cut(s)	441, 472
HapII	CCGG	1 cut(s)	474
Hin1II	CATG	5 cut(s)	100, 301, 632, 656, 865
HincII	GTYRAC	2 cut(s)	673, 805
HindII	GTYRAC	2 cut(s)	673, 805
HindIII	AAGCTT	2 cut(s)	190, 209
HinfI	GANTC	2 cut(s)	494, 1023
HpaII	CCGG	1 cut(s)	474
HphI	GGTGA	3 cut(s)	358, 778, 884
Hpy166II	GTNNAC	3 cut(s)	361, 673, 805
Hpy188I	TCNGA	4 cut(s)	207, 541, 588, 934
Hpy188III	TCNNGA	3 cut(s)	231, 638, 829
Hpy8I	GTNNAC	3 cut(s)	361, 673, 805
HpyAV	CCTTC	2 cut(s)	231, 667
HpyCH4III	ACNGT	1 cut(s)	255
HpyF10VI	GCNNNNNNNGC	5 cut(s)	77, 380, 878, 989, 1001
HpyF3I	CTNAG	5 cut(s)	220, 332, 490, 678, 1019
Hsp92II	CATG	5 cut(s)	100, 301, 632, 656, 865
Ksp22I	TGATCA	1 cut(s)	202
Kzo9I	GATC	2 cut(s)	202, 385
LmnI	GCTCC	2 cut(s)	6, 956
Lsp1109I	GCAGC	3 cut(s)	75, 859, 979
LweI	GCATC	1 cut(s)	992
MaeI	CTAG	1 cut(s)	704
MaeIII	GTNAC	3 cut(s)	409, 524, 890
MalI	GATC	2 cut(s)	204, 387
MboI	GATC	2 cut(s)	202, 385
MboII	GAAGA	9 cut(s)	167, 170, 246, 272, 575, 610, 623, 913, 1032
MflI	RGATCY	1 cut(s)	385
MhlI	GDGCHC	5 cut(s)	363, 433, 474, 757, 928
MmeI	TCCRAC	1 cut(s)	237
MseI	TTAA	3 cut(s)	26, 116, 303
MslI	CAYNNNNRTG	3 cut(s)	95, 764, 860
MspI	CCGG	1 cut(s)	474
MspR9I	CCNGG	1 cut(s)	474
MwoI	GCNNNNNNNGC	5 cut(s)	77, 380, 878, 989, 1001
NciI	CCSGG	1 cut(s)	474
NdeII	GATC	2 cut(s)	202, 385
NlaIII	CATG	5 cut(s)	100, 301, 632, 656, 865
NlaIV	GGNNCC	6 cut(s)	8, 129, 150, 472, 666, 952
NmuCI	GTSAC	2 cut(s)	524, 890
NspI	RCATGY	2 cut(s)	301, 656
NspV	TTCGAA	1 cut(s)	244
PaeI	GCATGC	1 cut(s)	301
PceI	AGGCCT	1 cut(s)	441
PfeI	GAWTC	2 cut(s)	494, 1023
PflMI	CCANNNNNTGG	1 cut(s)	629
PkrI	GCNGC	3 cut(s)	65, 874, 994
PpuMI	RGGWCCY	1 cut(s)	700
PsiI	TTATAA	1 cut(s)	275
Psp124BI	GAGCTC	1 cut(s)	928
Psp5II	RGGWCCY	1 cut(s)	700
PspN4I	GGNNCC	6 cut(s)	8, 129, 150, 472, 666, 952
PspOMI	GGGCCC	1 cut(s)	470
PspPI	GGNCC	4 cut(s)	128, 470, 471, 700
PspPPI	RGGWCCY	1 cut(s)	700
PstI	CTGCAG	1 cut(s)	877
PsuI	RGATCY	1 cut(s)	385
RseI	CAYNNNNRTG	3 cut(s)	95, 764, 860
SacI	GAGCTC	1 cut(s)	928
SaqAI	TTAA	3 cut(s)	26, 116, 303
SatI	GCNGC	3 cut(s)	64, 873, 993
Sau3AI	GATC	2 cut(s)	202, 385
Sau96I	GGNCC	4 cut(s)	128, 470, 471, 700
ScrFI	CCNGG	1 cut(s)	474
SduI	GDGCHC	5 cut(s)	363, 433, 474, 757, 928
SfaNI	GCATC	1 cut(s)	992
SfcI	CTRYAG	1 cut(s)	873
SfuI	TTCGAA	1 cut(s)	244
SinI	GGWCC	2 cut(s)	128, 700
SmiMI	CAYNNNNRTG	3 cut(s)	95, 764, 860
SphI	GCATGC	1 cut(s)	301
SseBI	AGGCCT	1 cut(s)	441
SspMI	CTAG	1 cut(s)	704
SstI	GAGCTC	1 cut(s)	928
StuI	AGGCCT	1 cut(s)	441
StyD4I	CCNGG	1 cut(s)	472
StyI	CCWWGG	1 cut(s)	696
TaaI	ACNGT	1 cut(s)	255
TaqI	TCGA	1 cut(s)	244
TfiI	GAWTC	2 cut(s)	494, 1023
Tru1I	TTAA	3 cut(s)	26, 116, 303
Tru9I	TTAA	3 cut(s)	26, 116, 303
TscAI	CASTG	1 cut(s)	882
TseFI	GTSAC	2 cut(s)	524, 890
TseI	GCWGC	3 cut(s)	63, 872, 992
Tsp45I	GTSAC	2 cut(s)	524, 890
TspDTI	ATGAA	4 cut(s)	617, 981, 1015, 1032
TspRI	CASTG	1 cut(s)	882
Van91I	CCANNNNNTGG	1 cut(s)	629
VneI	GTGCAC	1 cut(s)	359
VpaK11BI	GGWCC	2 cut(s)	128, 700
XagI	CCTNNNNNAGG	1 cut(s)	341
XapI	RAATTY	4 cut(s)	154, 533, 824, 839
XceI	RCATGY	2 cut(s)	301, 656
XcmI	CCANNNNNNNNNTGG	1 cut(s)	193
XspI	CTAG	1 cut(s)	704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.