Rh6AG458200
ERF Family

Phosphorylase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000829
Physical Location & Seq
Forward (+)
64154258 .. 64157872
3615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG458200.1

Sequence Viewer

Length: 699 bp
ATGCAAACCCAGATCTCCATCTTGCAGATGTGGTCATTCCTCAGTATTGGGCGCATACTGCTCTTTGGAACTGGCAGAGATATGGAAATGGACCAGAAGATGAGCTACCTTGAATCACAAGGAGACTACACCAGAGACATTGGCTACTTAAAATTTGCAAATTATACAGTCAATATGACAGATAGAAGCTCATACGACAACCTGTTGAACAATATCTGGTATCAACCGGAGGAAGTCTTCCCCGTCGATGGAACTCCAGAACAAAGAGAGCATGCCTTTTGGATCCCTGTTGATCCATTCTACTATGAAGTTTCCCAAAAGCTAGAGGATGTGAGACTGGAAGGTTGCCTAAACTCAACGACGTGTTTGTCACATACACCAAGAGTGGCAAGAGTCCAAAGGGGAACGAGTGCAAGCATTTACCTTGACAGTGCTGCATATCGCGACTTCATATATGATAAGTTCAACATAACTCCGGTGTCTATGGAAAGTGCTTCTGTTGCTTTGATATGTCTTCAACAAAAGGTGTCTTTCATTGTCATCAGAGCGCTCTCTGACTTGGCCGGTGGTGGCTCTGCAGATTCGAATGAGGCTGACACTTTCGTCACTCTTGCTTCCAACAATTCAGTCACAGTTCTTTTGGAATTTGTGAAACACTTATCTACTGCTACTATCTCATTGAGCAACATCAATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNP_UDP_1

Protein Analysis

232

Amino Acids

26.14

Weight (kDa)

4.7

Isoelectric Point (pI)

37.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNP_UDP_1 PF01048 97 - 218 1.8e-10 Phosphorylase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 367, 602
AccII CGCG 1 cut(s) 444
AclWI GGATC 3 cut(s) 277, 287, 290
AcoI YGGCCR 1 cut(s) 561
AcsI RAATTY 2 cut(s) 152, 644
AfeI AGCGCT 1 cut(s) 549
AfiI CCNNNNNNNGG 1 cut(s) 248
AflIII ACRYGT 1 cut(s) 362
AgsI TTSAA 4 cut(s) 113, 208, 466, 518
AjiI CACGTC 1 cut(s) 363
AluBI AGCT 3 cut(s) 105, 189, 322
AluI AGCT 3 cut(s) 105, 189, 322
Alw26I GTCTC 3 cut(s) 117, 129, 328
AlwI GGATC 3 cut(s) 277, 287, 290
Aor51HI AGCGCT 1 cut(s) 549
AoxI GGCC 1 cut(s) 561
ApeKI GCWGC 1 cut(s) 434
ApoI RAATTY 2 cut(s) 152, 644
AspLEI GCGC 2 cut(s) 54, 550
AspS9I GGNCC 1 cut(s) 91
AsuII TTCGAA 1 cut(s) 584
AvaII GGWCC 1 cut(s) 91
BamHI GGATCC 1 cut(s) 282
BarI GAAGNNNNNNTAC 2 cut(s) 89, 121
BbsI GAAGAC 2 cut(s) 229, 506
BbvI GCAGC 1 cut(s) 421
BccI CCATC 2 cut(s) 26, 242
BcoDI GTCTC 3 cut(s) 117, 129, 328
BfaI CTAG 1 cut(s) 323
BfmI CTRYAG 1 cut(s) 576
BfoI RGCGCY 1 cut(s) 551
BglII AGATCT 1 cut(s) 12
BisI GCNGC 1 cut(s) 435
BlsI GCNGC 1 cut(s) 436
Bme18I GGWCC 1 cut(s) 91
BmgBI CACGTC 1 cut(s) 363
BmgT120I GGNCC 1 cut(s) 91
BmiI GGNNCC 1 cut(s) 284
BpiI GAAGAC 2 cut(s) 229, 506
BpmI CTGGAG 1 cut(s) 240
Bpu14I TTCGAA 1 cut(s) 584
BsaBI GATNNNNATC 1 cut(s) 17
BsaWI WCCGGW 2 cut(s) 226, 475
Bsc4I CCNNNNNNNGG 1 cut(s) 248
Bse118I RCCGGY 1 cut(s) 563
Bse1I ACTGG 2 cut(s) 76, 342
Bse8I GATNNNNATC 1 cut(s) 17
BseGI GGATG 1 cut(s) 334
BseJI GATNNNNATC 1 cut(s) 17
BseLI CCNNNNNNNGG 1 cut(s) 248
BseMII CTCAG 1 cut(s) 55
BseNI ACTGG 2 cut(s) 76, 342
BseXI GCAGC 1 cut(s) 421
Bsh1236I CGCG 1 cut(s) 444
BshFI GGCC 1 cut(s) 563
BsiSI CCGG 3 cut(s) 227, 476, 564
BslI CCNNNNNNNGG 1 cut(s) 248
BsmAI GTCTC 3 cut(s) 117, 129, 328
BsnI GGCC 1 cut(s) 563
Bsp119I TTCGAA 1 cut(s) 584
Bsp143I GATC 3 cut(s) 12, 282, 292
Bsp68I TCGCGA 1 cut(s) 444
BspANI GGCC 1 cut(s) 563
BspCNI CTCAG 1 cut(s) 54
BspFNI CGCG 1 cut(s) 444
BspLI GGNNCC 1 cut(s) 284
BspMAI CTGCAG 1 cut(s) 580
BspPI GGATC 3 cut(s) 277, 287, 290
BspT104I TTCGAA 1 cut(s) 584
BsrFI RCCGGY 1 cut(s) 563
BsrI ACTGG 2 cut(s) 76, 342
BssAI RCCGGY 1 cut(s) 563
BssMI GATC 3 cut(s) 12, 282, 292
Bst4CI ACNGT 3 cut(s) 169, 431, 634
BstBI TTCGAA 1 cut(s) 584
BstC8I GCNNGC 2 cut(s) 273, 415
BstDEI CTNAG 1 cut(s) 41
BstF5I GGATG 1 cut(s) 334
BstFNI CGCG 1 cut(s) 444
BstH2I RGCGCY 1 cut(s) 551
BstHHI GCGC 2 cut(s) 54, 550
BstKTI GATC 3 cut(s) 15, 285, 295
BstMAI GTCTC 3 cut(s) 117, 129, 328
BstMBI GATC 3 cut(s) 12, 282, 292
BstMWI GCNNNNNNNGC 2 cut(s) 58, 500
BstNSI RCATGY 1 cut(s) 275
BstSFI CTRYAG 1 cut(s) 576
BstUI CGCG 1 cut(s) 444
BstV1I GCAGC 1 cut(s) 421
BstV2I GAAGAC 2 cut(s) 229, 506
BstX2I RGATCY 2 cut(s) 12, 282
BstYI RGATCY 2 cut(s) 12, 282
BsuRI GGCC 1 cut(s) 563
BtrI CACGTC 1 cut(s) 363
BtsCI GGATG 1 cut(s) 334
BtsIMutI CAGTG 1 cut(s) 436
BtuMI TCGCGA 1 cut(s) 444
Cac8I GCNNGC 2 cut(s) 273, 415
CfoI GCGC 2 cut(s) 54, 550
Cfr10I RCCGGY 1 cut(s) 563
Cfr13I GGNCC 1 cut(s) 91
CviAII CATG 1 cut(s) 272
CviJI RGCY 7 cut(s) 105, 144, 189, 322, 563, 573, 593
CviKI_1 RGCY 7 cut(s) 105, 144, 189, 322, 563, 573, 593
DdeI CTNAG 1 cut(s) 41
DpnI GATC 3 cut(s) 14, 284, 294
DpnII GATC 3 cut(s) 12, 282, 292
DrdI GACNNNNNNGTC 2 cut(s) 367, 602
DseDI GACNNNNNNGTC 2 cut(s) 367, 602
EaeI YGGCCR 1 cut(s) 561
Eco47I GGWCC 1 cut(s) 91
Eco47III AGCGCT 1 cut(s) 549
FaeI CATG 1 cut(s) 275
FatI CATG 1 cut(s) 271
Fnu4HI GCNGC 1 cut(s) 435
FokI GGATG 1 cut(s) 341
Fsp4HI GCNGC 1 cut(s) 435
FspBI CTAG 1 cut(s) 323
GlaI GCGC 2 cut(s) 53, 549
GluI GCNGC 1 cut(s) 435
GsuI CTGGAG 1 cut(s) 240
HaeII RGCGCY 1 cut(s) 551
HaeIII GGCC 1 cut(s) 563
HapII CCGG 3 cut(s) 227, 476, 564
HhaI GCGC 2 cut(s) 54, 550
Hin1II CATG 1 cut(s) 275
Hin6I GCGC 2 cut(s) 52, 548
HinP1I GCGC 2 cut(s) 52, 548
HinfI GANTC 3 cut(s) 113, 393, 581
HpaII CCGG 3 cut(s) 227, 476, 564
Hpy188I TCNGA 2 cut(s) 545, 556
Hpy188III TCNNGA 2 cut(s) 257, 443
Hpy99I CGWCG 2 cut(s) 248, 364
HpyAV CCTTC 1 cut(s) 335
HpyCH4III ACNGT 3 cut(s) 169, 431, 634
HpyCH4IV ACGT 1 cut(s) 362
HpyCH4V TGCA 6 cut(s) 4, 25, 158, 413, 437, 578
HpyF10VI GCNNNNNNNGC 2 cut(s) 58, 500
HpyF3I CTNAG 1 cut(s) 41
HpySE526I ACGT 1 cut(s) 362
Hsp92II CATG 1 cut(s) 275
HspAI GCGC 2 cut(s) 52, 548
Kzo9I GATC 3 cut(s) 12, 282, 292
Lsp1109I GCAGC 1 cut(s) 421
MaeI CTAG 1 cut(s) 323
MaeII ACGT 1 cut(s) 362
MaeIII GTNAC 3 cut(s) 369, 604, 628
MalI GATC 3 cut(s) 14, 284, 294
MboI GATC 3 cut(s) 12, 282, 292
MboII GAAGA 3 cut(s) 109, 229, 506
MflI RGATCY 2 cut(s) 12, 282
MluCI AATT 4 cut(s) 152, 160, 622, 644
MlyI GAGTC 1 cut(s) 402
MmeI TCCRAC 1 cut(s) 642
MnlI CCTC 4 cut(s) 50, 223, 319, 583
MseI TTAA 2 cut(s) 149, 697
MspI CCGG 3 cut(s) 227, 476, 564
MvnI CGCG 1 cut(s) 444
MwoI GCNNNNNNNGC 2 cut(s) 58, 500
NdeII GATC 3 cut(s) 12, 282, 292
NlaIII CATG 1 cut(s) 275
NlaIV GGNNCC 1 cut(s) 284
NmuCI GTSAC 3 cut(s) 369, 604, 628
NruI TCGCGA 1 cut(s) 444
NspI RCATGY 1 cut(s) 275
NspV TTCGAA 1 cut(s) 584
PaeI GCATGC 1 cut(s) 275
PfeI GAWTC 2 cut(s) 113, 581
PkrI GCNGC 1 cut(s) 436
PleI GAGTC 1 cut(s) 401
PpsI GAGTC 1 cut(s) 401
PspN4I GGNNCC 1 cut(s) 284
PspPI GGNCC 1 cut(s) 91
PstI CTGCAG 1 cut(s) 580
PsuI RGATCY 2 cut(s) 12, 282
RruI TCGCGA 1 cut(s) 444
SaqAI TTAA 2 cut(s) 149, 697
SatI GCNGC 1 cut(s) 435
Sau3AI GATC 3 cut(s) 12, 282, 292
Sau96I GGNCC 1 cut(s) 91
SchI GAGTC 1 cut(s) 402
SetI ASST 9 cut(s) 107, 111, 191, 204, 324, 346, 365, 426, 528
SfcI CTRYAG 1 cut(s) 576
SfuI TTCGAA 1 cut(s) 584
SinI GGWCC 1 cut(s) 91
SphI GCATGC 1 cut(s) 275
Sse9I AATT 4 cut(s) 152, 160, 622, 644
SspMI CTAG 1 cut(s) 323
TaaI ACNGT 3 cut(s) 169, 431, 634
TaiI ACGT 1 cut(s) 365
TaqI TCGA 2 cut(s) 246, 584
TasI AATT 4 cut(s) 152, 160, 622, 644
TfiI GAWTC 2 cut(s) 113, 581
Tru1I TTAA 2 cut(s) 149, 697
Tru9I TTAA 2 cut(s) 149, 697
TscAI CASTG 1 cut(s) 436
TseFI GTSAC 3 cut(s) 369, 604, 628
TseI GCWGC 1 cut(s) 434
Tsp45I GTSAC 3 cut(s) 369, 604, 628
TspDTI ATGAA 3 cut(s) 321, 439, 523
TspRI CASTG 1 cut(s) 436
VpaK11BI GGWCC 1 cut(s) 91
XapI RAATTY 2 cut(s) 152, 644
XceI RCATGY 1 cut(s) 275
XspI CTAG 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.