Rh6BG095600

Bark storage protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000829
Physical Location & Seq
Reverse (-)
14964180 .. 14964734
555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG095600.1

Sequence Viewer

Length: 555 bp
ATGGAGAGCCATTTGAAGATGGTGTTAGTGGTTTTGGAGATTAGCACCAGAACAGTTGATGGTGCAGTTTCTCAAAGTACCATGAAAAAGATTGATAGGATGAATAGGAAAGGCCCATATTTGGGTATTATAGTACCAAATTCCTTTGAGCTCACCCCTCTTCTTCAATCTGCAAGTTTTGTGGCTGATCAGAAGCTTCCCAGTTTGGATTTTTCAGGAAGAAGGTTTCGATTCGGTAGATTGGATAATCAAAGTGTTGTAATTGCTATGACAGGGTTGAGCATGCTTAATGCAGGAGTAACAACTCAATTATTGCTTACCCTATTCAAGGTGAAAGGGGTTGTGCACTATGGAATTGCAGGAAATGCAGATCCTCAACTCCAAATTGGAGATGTCACTATCCCTCAGTATTGGACTCATACAGGACTTTGGAATTGGCAGAGGTTTAGGGATGGTCCTGATGATTTGTTATCTTTGGAGTCATTCGGAGACTACACCAGGGATGTTGGTTACATAAAATTTTCCGAATTCAACAACAAAACAGATCGAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNP_UDP_1

Protein Analysis

184

Amino Acids

20.7

Weight (kDa)

8.89

Isoelectric Point (pI)

24.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNP_UDP_1 PF01048 41 - 152 6e-17 Phosphorylase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 365
AcsI RAATTY 3 cut(s) 139, 518, 527
AfaI GTAC 2 cut(s) 79, 135
AfiI CCNNNNNNNGG 3 cut(s) 121, 122, 328
AgsI TTSAA 4 cut(s) 16, 167, 328, 532
AjnI CCWGG 1 cut(s) 497
AluBI AGCT 2 cut(s) 151, 196
AluI AGCT 2 cut(s) 151, 196
Alw21I GWGCWC 2 cut(s) 153, 348
Alw26I GTCTC 1 cut(s) 483
Alw44I GTGCAC 1 cut(s) 344
AlwI GGATC 1 cut(s) 365
AoxI GGCC 1 cut(s) 112
ApaLI GTGCAC 1 cut(s) 344
ApoI RAATTY 3 cut(s) 139, 518, 527
AspS9I GGNCC 2 cut(s) 113, 455
AsuHPI GGTGA 2 cut(s) 145, 343
AvaII GGWCC 1 cut(s) 455
BaeGI GKGCMC 1 cut(s) 348
BanII GRGCYC 1 cut(s) 153
Bbv12I GWGCWC 2 cut(s) 153, 348
BccI CCATC 3 cut(s) 13, 53, 446
BciT130I CCWGG 1 cut(s) 499
BclI TGATCA 1 cut(s) 187
BcoDI GTCTC 1 cut(s) 483
Bme1390I CCNGG 1 cut(s) 499
Bme18I GGWCC 1 cut(s) 455
BmgT120I GGNCC 2 cut(s) 113, 455
BmrFI CCNGG 1 cut(s) 499
BmrI ACTGGG 1 cut(s) 195
BmuI ACTGGG 1 cut(s) 195
BsaJI CCNNGG 1 cut(s) 498
Bsc4I CCNNNNNNNGG 3 cut(s) 121, 122, 328
Bse1I ACTGG 1 cut(s) 201
BseBI CCWGG 1 cut(s) 499
BseDI CCNNGG 1 cut(s) 498
BseGI GGATG 3 cut(s) 105, 457, 508
BseLI CCNNNNNNNGG 3 cut(s) 121, 122, 328
BseMII CTCAG 1 cut(s) 419
BseNI ACTGG 1 cut(s) 201
BseSI GKGCMC 1 cut(s) 348
BsgI GTGCAG 1 cut(s) 84
BshFI GGCC 1 cut(s) 114
BsiHKAI GWGCWC 2 cut(s) 153, 348
BslI CCNNNNNNNGG 3 cut(s) 121, 122, 328
BsmAI GTCTC 1 cut(s) 483
BsnI GGCC 1 cut(s) 114
Bsp1286I GDGCHC 2 cut(s) 153, 348
Bsp143I GATC 3 cut(s) 187, 370, 544
BspANI GGCC 1 cut(s) 114
BspCNI CTCAG 1 cut(s) 418
BspPI GGATC 1 cut(s) 365
BsrI ACTGG 1 cut(s) 201
BssECI CCNNGG 1 cut(s) 498
BssMI GATC 3 cut(s) 187, 370, 544
Bst2UI CCWGG 1 cut(s) 499
Bst4CI ACNGT 1 cut(s) 55
Bst6I CTCTTC 1 cut(s) 165
BstAPI GCANNNNNTGC 1 cut(s) 365
BstC8I GCNNGC 1 cut(s) 284
BstDEI CTNAG 1 cut(s) 405
BstENI CCTNNNNNAGG 1 cut(s) 326
BstF5I GGATG 3 cut(s) 105, 457, 508
BstKTI GATC 3 cut(s) 190, 373, 547
BstMAI GTCTC 1 cut(s) 483
BstMBI GATC 3 cut(s) 187, 370, 544
BstMWI GCNNNNNNNGC 1 cut(s) 365
BstNI CCWGG 1 cut(s) 499
BstNSI RCATGY 1 cut(s) 286
BstSCI CCNGG 1 cut(s) 497
BstSLI GKGCMC 1 cut(s) 348
BstX2I RGATCY 1 cut(s) 370
BstYI RGATCY 1 cut(s) 370
BsuRI GGCC 1 cut(s) 114
BtsCI GGATG 3 cut(s) 105, 457, 508
Cac8I GCNNGC 1 cut(s) 284
Cfr13I GGNCC 2 cut(s) 113, 455
Csp6I GTAC 2 cut(s) 78, 134
CspCI CAANNNNNGTGG 2 cut(s) 162, 197
CviAII CATG 2 cut(s) 82, 283
CviJI RGCY 5 cut(s) 9, 114, 151, 185, 196
CviKI_1 RGCY 5 cut(s) 9, 114, 151, 185, 196
CviQI GTAC 2 cut(s) 78, 134
DdeI CTNAG 1 cut(s) 405
DpnI GATC 3 cut(s) 189, 372, 546
DpnII GATC 3 cut(s) 187, 370, 544
Eam1104I CTCTTC 1 cut(s) 165
EarI CTCTTC 1 cut(s) 165
Ecl136II GAGCTC 1 cut(s) 151
Eco24I GRGCYC 1 cut(s) 153
Eco47I GGWCC 1 cut(s) 455
Eco53kI GAGCTC 1 cut(s) 151
EcoICRI GAGCTC 1 cut(s) 151
EcoNI CCTNNNNNAGG 1 cut(s) 326
EcoRI GAATTC 1 cut(s) 527
EcoRII CCWGG 1 cut(s) 497
EcoT38I GRGCYC 1 cut(s) 153
FaeI CATG 2 cut(s) 85, 286
FaiI YATR 8 cut(s) 83, 118, 131, 269, 284, 351, 420, 515
FatI CATG 2 cut(s) 81, 282
FbaI TGATCA 1 cut(s) 187
FokI GGATG 3 cut(s) 112, 464, 515
FriOI GRGCYC 1 cut(s) 153
HaeIII GGCC 1 cut(s) 114
Hin1II CATG 2 cut(s) 85, 286
HindIII AAGCTT 1 cut(s) 194
HinfI GANTC 3 cut(s) 231, 415, 479
HphI GGTGA 2 cut(s) 145, 343
Hpy166II GTNNAC 1 cut(s) 346
Hpy188I TCNGA 3 cut(s) 192, 488, 526
Hpy188III TCNNGA 2 cut(s) 216, 458
Hpy8I GTNNAC 1 cut(s) 346
HpyAV CCTTC 1 cut(s) 216
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4V TGCA 6 cut(s) 65, 173, 293, 346, 359, 368
HpyF10VI GCNNNNNNNGC 1 cut(s) 365
HpyF3I CTNAG 1 cut(s) 405
Hsp92II CATG 2 cut(s) 85, 286
Ksp22I TGATCA 1 cut(s) 187
Kzo9I GATC 3 cut(s) 187, 370, 544
MaeIII GTNAC 3 cut(s) 298, 394, 509
MalI GATC 3 cut(s) 189, 372, 546
MboI GATC 3 cut(s) 187, 370, 544
MboII GAAGA 4 cut(s) 28, 152, 155, 231
MflI RGATCY 1 cut(s) 370
MhlI GDGCHC 2 cut(s) 153, 348
MluCI AATT 8 cut(s) 139, 261, 308, 354, 384, 433, 518, 527
MlyI GAGTC 2 cut(s) 409, 488
MnlI CCTC 4 cut(s) 168, 384, 414, 435
MseI TTAA 1 cut(s) 288
MspR9I CCNGG 1 cut(s) 499
MvaI CCWGG 1 cut(s) 499
MwoI GCNNNNNNNGC 1 cut(s) 365
NdeII GATC 3 cut(s) 187, 370, 544
NlaIII CATG 2 cut(s) 85, 286
NmuCI GTSAC 1 cut(s) 394
NspI RCATGY 1 cut(s) 286
PaeI GCATGC 1 cut(s) 286
PfeI GAWTC 1 cut(s) 231
PleI GAGTC 2 cut(s) 409, 487
PpsI GAGTC 2 cut(s) 409, 487
Psp124BI GAGCTC 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 497
PspGI CCWGG 1 cut(s) 497
PspPI GGNCC 2 cut(s) 113, 455
PsuI RGATCY 1 cut(s) 370
RsaI GTAC 2 cut(s) 79, 135
RsaNI GTAC 2 cut(s) 78, 134
SacI GAGCTC 1 cut(s) 153
SaqAI TTAA 1 cut(s) 288
Sau3AI GATC 3 cut(s) 187, 370, 544
Sau96I GGNCC 2 cut(s) 113, 455
SchI GAGTC 2 cut(s) 409, 488
ScrFI CCNGG 1 cut(s) 499
SduI GDGCHC 2 cut(s) 153, 348
SetI ASST 5 cut(s) 153, 198, 227, 333, 446
SinI GGWCC 1 cut(s) 455
SphI GCATGC 1 cut(s) 286
Sse9I AATT 8 cut(s) 139, 261, 308, 354, 384, 433, 518, 527
SstI GAGCTC 1 cut(s) 153
StyD4I CCNGG 1 cut(s) 497
TaaI ACNGT 1 cut(s) 55
TaqI TCGA 2 cut(s) 229, 547
TasI AATT 8 cut(s) 139, 261, 308, 354, 384, 433, 518, 527
TfiI GAWTC 1 cut(s) 231
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TseFI GTSAC 1 cut(s) 394
Tsp45I GTSAC 1 cut(s) 394
TspDTI ATGAA 2 cut(s) 98, 116
VneI GTGCAC 1 cut(s) 344
VpaK11BI GGWCC 1 cut(s) 455
XagI CCTNNNNNAGG 1 cut(s) 326
XapI RAATTY 3 cut(s) 139, 518, 527
XceI RCATGY 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.