RchiOBHm_Chr6g0259271

Bark storage protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000829
Physical Location & Seq
Reverse (-)
14528210 .. 14529018
809 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23246

Sequence Viewer

Length: 717 bp
ATGGTGTTAGTGGTTTTCTTTGTATTGGTTTTGGAGATTAGCACTAGAACAGTTGATGGTGCAGTTTCTCAAAGTACCATGAAAAAGATTGATAGGATGAATAGGAAAGGCCCATACTTGGGTATTATAGTACCAAATTCCTTTGAGCTCACCCCTCTTCTTCAATCTGCAAGCTTTGTGGCTGATCAGAAGCTTCCCAGTTTGGATTTTTCAGGAAGAAGGTTTCGATTCGGTAGATTGGATAATCAAAGTGTTGTAATTGCTATGACAGGGTTGAGCATGCTTAATGCAGGAGTAACAACTCAAATATTGCTTACCCTATTCAAGGTGAAAGGGGTTGTGCACTATGGAATTGCAGGAAATGCAGATCCTCAACTCCAAATTGGAGATGTCACTATCCCTCAGTATTGGACTCATACAGGACTTTGGAATTGGCAGAGGTTTGGGGATAGTCCTGATGATTTGTTATCTTTGGAGTCATTCGGAGACTACAGCAGGGATATCTTCCCAGTTTATGGCACTCCTGAAGTTCGGCAGCACGCCTTTTGGGTCCCTGTAAACAAAAAATATTTTGCTCTTGCTCAACAACTACAGGATTTGAAGTTAGAGGGTTGTGTGAATACAACTTGTTTACCAAGAACACCAATAGCGGTGAGAGTGCAAAGGGGGATGAGTGCCAATGTGTTTGTTGACAATAGTGCATATAGACAATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNP_UDP_1

Protein Analysis

238

Amino Acids

26.7

Weight (kDa)

9.12

Isoelectric Point (pI)

31.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNP_UDP_1 PF01048 40 - 181 1.5e-17 Phosphorylase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 515
AciI CCGC 1 cut(s) 650
AclWI GGATC 1 cut(s) 362
AcsI RAATTY 1 cut(s) 136
AcuI CTGAAG 1 cut(s) 546
AfaI GTAC 2 cut(s) 76, 132
AfiI CCNNNNNNNGG 4 cut(s) 118, 119, 325, 515
AgsI TTSAA 3 cut(s) 164, 325, 601
AluBI AGCT 3 cut(s) 148, 174, 193
AluI AGCT 3 cut(s) 148, 174, 193
Alw21I GWGCWC 2 cut(s) 150, 345
Alw26I GTCTC 1 cut(s) 480
Alw44I GTGCAC 1 cut(s) 341
AlwI GGATC 1 cut(s) 362
AoxI GGCC 1 cut(s) 109
ApaLI GTGCAC 1 cut(s) 341
ApeKI GCWGC 1 cut(s) 535
ApoI RAATTY 1 cut(s) 136
AspS9I GGNCC 2 cut(s) 110, 550
AsuHPI GGTGA 3 cut(s) 142, 340, 664
AvaII GGWCC 1 cut(s) 550
BaeGI GKGCMC 1 cut(s) 345
BanII GRGCYC 1 cut(s) 150
Bbv12I GWGCWC 2 cut(s) 150, 345
BbvI GCAGC 1 cut(s) 547
BccI CCATC 1 cut(s) 50
BclI TGATCA 1 cut(s) 184
BcoDI GTCTC 1 cut(s) 480
BfaI CTAG 2 cut(s) 45, 715
BfmI CTRYAG 2 cut(s) 490, 590
BisI GCNGC 1 cut(s) 536
BlsI GCNGC 1 cut(s) 537
Bme18I GGWCC 1 cut(s) 550
BmgT120I GGNCC 2 cut(s) 110, 550
BmiI GGNNCC 2 cut(s) 551, 552
BmrI ACTGGG 2 cut(s) 192, 503
BmuI ACTGGG 2 cut(s) 192, 503
Bsc4I CCNNNNNNNGG 4 cut(s) 118, 119, 325, 515
Bse1I ACTGG 2 cut(s) 198, 509
BseGI GGATG 2 cut(s) 102, 675
BseLI CCNNNNNNNGG 4 cut(s) 118, 119, 325, 515
BseMII CTCAG 1 cut(s) 416
BseNI ACTGG 2 cut(s) 198, 509
BseSI GKGCMC 1 cut(s) 345
BseXI GCAGC 1 cut(s) 547
BsgI GTGCAG 1 cut(s) 81
BshFI GGCC 1 cut(s) 111
BsiHKAI GWGCWC 2 cut(s) 150, 345
BslFI GGGAC 1 cut(s) 536
BslI CCNNNNNNNGG 4 cut(s) 118, 119, 325, 515
BsmAI GTCTC 1 cut(s) 480
BsmFI GGGAC 1 cut(s) 536
BsnI GGCC 1 cut(s) 111
Bsp1286I GDGCHC 2 cut(s) 150, 345
Bsp143I GATC 2 cut(s) 184, 367
BspACI CCGC 1 cut(s) 650
BspANI GGCC 1 cut(s) 111
BspCNI CTCAG 1 cut(s) 415
BspLI GGNNCC 2 cut(s) 551, 552
BspPI GGATC 1 cut(s) 362
BsrI ACTGG 2 cut(s) 198, 509
BssMI GATC 2 cut(s) 184, 367
Bst4CI ACNGT 1 cut(s) 52
Bst6I CTCTTC 1 cut(s) 162
BstAPI GCANNNNNTGC 1 cut(s) 362
BstC8I GCNNGC 3 cut(s) 172, 281, 540
BstDEI CTNAG 1 cut(s) 402
BstENI CCTNNNNNAGG 1 cut(s) 323
BstF5I GGATG 2 cut(s) 102, 675
BstKTI GATC 2 cut(s) 187, 370
BstMAI GTCTC 1 cut(s) 480
BstMBI GATC 2 cut(s) 184, 367
BstMWI GCNNNNNNNGC 1 cut(s) 362
BstNSI RCATGY 1 cut(s) 283
BstSFI CTRYAG 2 cut(s) 490, 590
BstSLI GKGCMC 1 cut(s) 345
BstV1I GCAGC 1 cut(s) 547
BstX2I RGATCY 1 cut(s) 367
BstYI RGATCY 1 cut(s) 367
BsuRI GGCC 1 cut(s) 111
BtsCI GGATG 2 cut(s) 102, 675
Cac8I GCNNGC 3 cut(s) 172, 281, 540
Cfr13I GGNCC 2 cut(s) 110, 550
Csp6I GTAC 2 cut(s) 75, 131
CspCI CAANNNNNGTGG 2 cut(s) 159, 194
CviAII CATG 2 cut(s) 79, 280
CviJI RGCY 5 cut(s) 111, 148, 174, 182, 193
CviKI_1 RGCY 5 cut(s) 111, 148, 174, 182, 193
CviQI GTAC 2 cut(s) 75, 131
DdeI CTNAG 1 cut(s) 402
DpnI GATC 2 cut(s) 186, 369
DpnII GATC 2 cut(s) 184, 367
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
Ecl136II GAGCTC 1 cut(s) 148
Eco24I GRGCYC 1 cut(s) 150
Eco32I GATATC 1 cut(s) 502
Eco47I GGWCC 1 cut(s) 550
Eco53kI GAGCTC 1 cut(s) 148
Eco57I CTGAAG 1 cut(s) 546
EcoICRI GAGCTC 1 cut(s) 148
EcoNI CCTNNNNNAGG 1 cut(s) 323
EcoO109I RGGNCCY 1 cut(s) 550
EcoRV GATATC 1 cut(s) 502
EcoT38I GRGCYC 1 cut(s) 150
FaeI CATG 2 cut(s) 82, 283
FaqI GGGAC 1 cut(s) 536
FatI CATG 2 cut(s) 78, 279
FbaI TGATCA 1 cut(s) 184
Fnu4HI GCNGC 1 cut(s) 536
FokI GGATG 2 cut(s) 109, 682
FriOI GRGCYC 1 cut(s) 150
Fsp4HI GCNGC 1 cut(s) 536
FspBI CTAG 2 cut(s) 45, 715
GluI GCNGC 1 cut(s) 536
HaeIII GGCC 1 cut(s) 111
Hin1II CATG 2 cut(s) 82, 283
HincII GTYRAC 1 cut(s) 691
HindII GTYRAC 1 cut(s) 691
HindIII AAGCTT 2 cut(s) 172, 191
HinfI GANTC 3 cut(s) 228, 412, 476
HphI GGTGA 3 cut(s) 142, 340, 664
Hpy166II GTNNAC 4 cut(s) 343, 559, 632, 691
Hpy188I TCNGA 2 cut(s) 189, 485
Hpy188III TCNNGA 3 cut(s) 213, 455, 524
Hpy8I GTNNAC 4 cut(s) 343, 559, 632, 691
HpyAV CCTTC 1 cut(s) 213
HpyCH4III ACNGT 1 cut(s) 52
HpyCH4V TGCA 8 cut(s) 62, 170, 290, 343, 356, 365, 661, 701
HpyF10VI GCNNNNNNNGC 1 cut(s) 362
HpyF3I CTNAG 1 cut(s) 402
Hsp92II CATG 2 cut(s) 82, 283
KflI GGGWCCC 1 cut(s) 550
Ksp22I TGATCA 1 cut(s) 184
Kzo9I GATC 2 cut(s) 184, 367
Lsp1109I GCAGC 1 cut(s) 547
MaeI CTAG 2 cut(s) 45, 715
MaeIII GTNAC 2 cut(s) 295, 391
MalI GATC 2 cut(s) 186, 369
MboI GATC 2 cut(s) 184, 367
MboII GAAGA 4 cut(s) 149, 152, 228, 496
MflI RGATCY 1 cut(s) 367
MhlI GDGCHC 2 cut(s) 150, 345
MluCI AATT 6 cut(s) 136, 258, 351, 381, 430, 710
MlyI GAGTC 2 cut(s) 406, 485
MnlI CCTC 5 cut(s) 165, 381, 411, 432, 601
MseI TTAA 1 cut(s) 285
MwoI GCNNNNNNNGC 1 cut(s) 362
NdeII GATC 2 cut(s) 184, 367
NlaIII CATG 2 cut(s) 82, 283
NlaIV GGNNCC 2 cut(s) 551, 552
NmuCI GTSAC 1 cut(s) 391
NspI RCATGY 1 cut(s) 283
PaeI GCATGC 1 cut(s) 283
PfeI GAWTC 1 cut(s) 228
PflMI CCANNNNNTGG 1 cut(s) 515
PkrI GCNGC 1 cut(s) 537
PleI GAGTC 2 cut(s) 406, 484
PpsI GAGTC 2 cut(s) 406, 484
PpuMI RGGWCCY 1 cut(s) 550
Psp124BI GAGCTC 1 cut(s) 150
Psp5II RGGWCCY 1 cut(s) 550
PspN4I GGNNCC 2 cut(s) 551, 552
PspPI GGNCC 2 cut(s) 110, 550
PspPPI RGGWCCY 1 cut(s) 550
PsuI RGATCY 1 cut(s) 367
RsaI GTAC 2 cut(s) 76, 132
RsaNI GTAC 2 cut(s) 75, 131
SacI GAGCTC 1 cut(s) 150
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 1 cut(s) 536
Sau3AI GATC 2 cut(s) 184, 367
Sau96I GGNCC 2 cut(s) 110, 550
SchI GAGTC 2 cut(s) 406, 485
SduI GDGCHC 2 cut(s) 150, 345
SetI ASST 6 cut(s) 150, 176, 195, 224, 330, 443
SfcI CTRYAG 2 cut(s) 490, 590
SinI GGWCC 1 cut(s) 550
SphI GCATGC 1 cut(s) 283
Sse9I AATT 6 cut(s) 136, 258, 351, 381, 430, 710
SsiI CCGC 1 cut(s) 650
SspI AATATT 2 cut(s) 309, 569
SspMI CTAG 2 cut(s) 45, 715
SstI GAGCTC 1 cut(s) 150
TaaI ACNGT 1 cut(s) 52
TaqI TCGA 1 cut(s) 226
TasI AATT 6 cut(s) 136, 258, 351, 381, 430, 710
TfiI GAWTC 1 cut(s) 228
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TseFI GTSAC 1 cut(s) 391
TseI GCWGC 1 cut(s) 535
Tsp45I GTSAC 1 cut(s) 391
TspDTI ATGAA 2 cut(s) 95, 113
Van91I CCANNNNNTGG 1 cut(s) 515
VneI GTGCAC 1 cut(s) 341
VpaK11BI GGWCC 1 cut(s) 550
XagI CCTNNNNNAGG 1 cut(s) 323
XapI RAATTY 1 cut(s) 136
XceI RCATGY 1 cut(s) 283
XspI CTAG 2 cut(s) 45, 715
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.