Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0000829

Physical Location & Seq

Genomic Coordinates Reverse (-)

5637822 .. 5639677

Gene Structure 1856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g08760.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGCTTAGTCCACTGCAGTTAAATGTTGCATTGTCAACTGAGACACAAATGTTGATTGAGGAGGCCAACATGAGTGGCCCTTATTTAGGTCTTGTCATTCCAAATTCTTATGAAATGGACCCTCTTCTGCAATCTCCAAACTTCACTTCAAGTAACCTGTTCATAGATTTCTCTGGGAGGAGATTTCGATTTGGAACAATTGCTAATAAGCCAGTCATATTGGTCATGACAGGACTGTCAATGATTAATGCAGCAATAACTACTCAGCTATTACTGAGCCAGTTTGATATAGAAGGAGTGGTACACTATGGCGTAGCAGGGCATGCAAACCCATCCCTCAATCTTGCAGATGTGGTCATTCCTCAGTATTGGTCCCATTCTGCTCTTTGGAGCTGGCAGAGATATGGAAATGGGCCCGAAGATGAGCTACCCCTTGAAAAAGATGGGGACTACACCAGAGAAATTGGATACTTAAATGTTGCAAATTACACAACAAATGTGACAGATGGAAGCACATATGACAACCTCTTGAACAACATTTGGTTTCAACCAGAGGAAGTCTTCCCCATAGATGGAACTCCGGAGGAAAGACAACATTCCTTTTGGGTTGCTGTTGATCCCCTTTACTATGAAATCTCCCAAAAATTGGAGGACCTGCAACTTGAACGTTGTCTAAACTCAACGACATGTTTGCCTCATATACCAAAAGTGTCTAGAGTCGAAAGGGGAACAAGTGCAAGCATTTTCCTATCCAATGCAGCTTATCGTAGCTTCTTATTTGATAAGTTCAACATTAGTCCTCTGGACATGGAAAGTGCTTCTGTTGCCCTAGTTTGTCTTCAGCAAAGGGTGCCTTTCATTGTCATCAGGGCTCTCTCGTCTTCTTCATCCGGCAGTGGCTCCTCCGACCCCAACGAGGCTGCCAAGTTCATATCTCTCGCTTCGAAAAATTCAGTTGTGGCAGTTGTGGAATTTATCAGACAGTTATCACTTCATCAGCAGCTAATTACTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNP_UDP_1

Protein Analysis

339

Amino Acids

37.64

Weight (kDa)

4.8

Isoelectric Point (pI)

47.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28940 AT4G28940
fragaria_vesca	FvH4_1g05530 FvH4_2g35741 FvH4_2g35750 FvH4_2g35760 FvH4_2g35761 FvH4_2g35762
malus_domestica	MD15G1095100.v1.1 MD15G1095200.v1.1 MD15G1095300.v1.1 MD15G1191300.v1.1
prunus_persica	Prupe.1G450100_v2.0.a1 Prupe.1G450200_v2.0.a1 Prupe.7G225900_v2.0.a1 Prupe.7G225900_v2.0.a1 Prupe.7G225900_v2.0.a1
pyrus_communis	pycom15g08760 pycom15g08770 pycom15g17130
rosa_chinensis	RchiOBHm_Chr1g0336711 RchiOBHm_Chr2g0091231 RchiOBHm_Chr6g0259261 RchiOBHm_Chr6g0259271 RchiOBHm_Chr6g0306011 RchiOBHm_Chr6g0306021
rosa_laevigata	RLG00000010830 RLG00000010831 RLG00000010832 RLG00000014544 RLG00000016193 RLG00000029340
rosa_multiflora	Rmu_sc0002270.1_g000016 Rmu_sc0011974.1_g000004 Rmu_sc0020534.1_g000001 Rmu_sc0035114.1_g000001 Rmu_sc0036553.1_g000001 Rmu_ssc0000050.1_g000090
rosa_roxburghii	Rroxscaffold_2G00150370 Rroxscaffold_7G00162110 Rroxscaffold_7G00162130
rosa_rugosa	Rorug02G0014600 Rorug06G0346400 Rorug06G0346600
rosa_samantha	Rh2AG060400 Rh2BG059100 Rh2CG060900 Rh2DG059700 Rh6AG103200 Rh6AG458200 Rh6AG458400 Rh6BG095600 Rh6BG442400 Rh6BG442500 Rh6BG442600 Rh6BG442700 Rh6CG092500 Rh6CG472700 Rh6CG472800 Rh6CG472900 Rh6DG086500 Rh6DG458800 Rh6DG459000 Rh6DG459100
rosa_wichuraiana	Rw2G004950 Rw6G008910 Rw6G039960 Rw6G039970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	235
Acc36I	ACCTGC	1 cut(s)	663
AccB1I	GGYRCC	1 cut(s)	850
AccB7I	CCANNNNNTGG	1 cut(s)	646
AccIII	TCCGGA	1 cut(s)	580
AclI	AACGTT	1 cut(s)	667
AclWI	GGATC	1 cut(s)	611
AcsI	RAATTY	3 cut(s)	103, 949, 971
AcuI	CTGAAG	1 cut(s)	824
AfaI	GTAC	1 cut(s)	303
AfiI	CCNNNNNNNGG	4 cut(s)	86, 572, 646, 916
AflIII	ACRYGT	1 cut(s)	686
AgsI	TTSAA	6 cut(s)	150, 437, 532, 548, 665, 790
AjuI	GAANNNNNNNTTGG	2 cut(s)	130, 162
AluBI	AGCT	6 cut(s)	268, 393, 427, 761, 771, 1003
AluI	AGCT	6 cut(s)	268, 393, 427, 761, 771, 1003
Alw26I	GTCTC	1 cut(s)	35
AlwI	GGATC	1 cut(s)	611
Aor13HI	TCCGGA	1 cut(s)	580
AoxI	GGCC	3 cut(s)	63, 76, 413
ApaI	GGGCCC	1 cut(s)	417
ApeKI	GCWGC	4 cut(s)	251, 758, 920, 1000
ApoI	RAATTY	3 cut(s)	103, 949, 971
AseI	ATTAAT	1 cut(s)	246
AspS9I	GGNCC	6 cut(s)	77, 118, 372, 413, 414, 652
AsuII	TTCGAA	1 cut(s)	944
AvaII	GGWCC	3 cut(s)	118, 372, 652
BaeGI	GKGCMC	1 cut(s)	417
BanI	GGYRCC	1 cut(s)	850
BanII	GRGCYC	2 cut(s)	417, 874
BarI	GAAGNNNNNNTAC	4 cut(s)	285, 317, 411, 443
BbsI	GAAGAC	3 cut(s)	553, 830, 873
BbvI	GCAGC	4 cut(s)	263, 770, 907, 1012
BccI	CCATC	4 cut(s)	340, 437, 500, 566
BcgI	CGANNNNNNTGC	2 cut(s)	673, 707
BciVI	GTATCC	1 cut(s)	461
BcoDI	GTCTC	1 cut(s)	35
BfaI	CTAG	2 cut(s)	714, 830
BfmI	CTRYAG	1 cut(s)	14
BfuAI	ACCTGC	1 cut(s)	663
BfuI	GTATCC	1 cut(s)	461
BisI	GCNGC	4 cut(s)	252, 759, 921, 1001
BlsI	GCNGC	4 cut(s)	253, 760, 922, 1002
Bme18I	GGWCC	3 cut(s)	118, 372, 652
BmgT120I	GGNCC	6 cut(s)	77, 118, 372, 413, 414, 652
BmiI	GGNNCC	5 cut(s)	120, 374, 415, 852, 901
BpiI	GAAGAC	3 cut(s)	553, 830, 873
Bpu14I	TTCGAA	1 cut(s)	944
BsaWI	WCCGGW	1 cut(s)	580
Bsc4I	CCNNNNNNNGG	4 cut(s)	86, 572, 646, 916
Bse1I	ACTGG	2 cut(s)	212, 280
BseAI	TCCGGA	1 cut(s)	580
BseGI	GGATG	2 cut(s)	332, 887
BseLI	CCNNNNNNNGG	4 cut(s)	86, 572, 646, 916
BseMII	CTCAG	4 cut(s)	30, 266, 278, 377
BseNI	ACTGG	2 cut(s)	212, 280
BseRI	GAGGAG	3 cut(s)	74, 193, 892
BseSI	GKGCMC	1 cut(s)	417
BseXI	GCAGC	4 cut(s)	263, 770, 907, 1012
BshFI	GGCC	3 cut(s)	65, 78, 415
BshNI	GGYRCC	1 cut(s)	850
BsiSI	CCGG	2 cut(s)	581, 891
BslFI	GGGAC	2 cut(s)	358, 461
BslI	CCNNNNNNNGG	4 cut(s)	86, 572, 646, 916
BsmAI	GTCTC	1 cut(s)	35
BsmFI	GGGAC	2 cut(s)	358, 461
BsnI	GGCC	3 cut(s)	65, 78, 415
Bsp119I	TTCGAA	1 cut(s)	944
Bsp120I	GGGCCC	1 cut(s)	413
Bsp1286I	GDGCHC	2 cut(s)	417, 874
Bsp13I	TCCGGA	1 cut(s)	580
Bsp143I	GATC	1 cut(s)	616
BspANI	GGCC	3 cut(s)	65, 78, 415
BspCNI	CTCAG	4 cut(s)	31, 267, 277, 376
BspEI	TCCGGA	1 cut(s)	580
BspHI	TCATGA	1 cut(s)	225
BspLI	GGNNCC	5 cut(s)	120, 374, 415, 852, 901
BspMAI	CTGCAG	1 cut(s)	18
BspMI	ACCTGC	1 cut(s)	663
BspPI	GGATC	1 cut(s)	611
BspT104I	TTCGAA	1 cut(s)	944
BspT107I	GGYRCC	1 cut(s)	850
BsrI	ACTGG	2 cut(s)	212, 280
BssMI	GATC	1 cut(s)	616
Bst4CI	ACNGT	2 cut(s)	237, 984
Bst6I	CTCTTC	1 cut(s)	129
BstAPI	GCANNNNNTGC	2 cut(s)	323, 850
BstBI	TTCGAA	1 cut(s)	944
BstC8I	GCNNGC	3 cut(s)	324, 395, 739
BstDEI	CTNAG	5 cut(s)	5, 39, 264, 275, 363
BstENI	CCTNNNNNAGG	1 cut(s)	84
BstF5I	GGATG	2 cut(s)	332, 887
BstKTI	GATC	1 cut(s)	619
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	1 cut(s)	616
BstMWI	GCNNNNNNNGC	3 cut(s)	323, 824, 850
BstNSI	RCATGY	2 cut(s)	326, 690
BstSFI	CTRYAG	1 cut(s)	14
BstSLI	GKGCMC	1 cut(s)	417
BstV1I	GCAGC	4 cut(s)	263, 770, 907, 1012
BstV2I	GAAGAC	3 cut(s)	553, 830, 873
BsuI	GTATCC	1 cut(s)	461
BsuRI	GGCC	3 cut(s)	65, 78, 415
BtsCI	GGATG	2 cut(s)	332, 887
BtsI	GCAGTG	2 cut(s)	11, 901
BtsIMutI	CAGTG	2 cut(s)	11, 901
BveI	ACCTGC	1 cut(s)	663
Cac8I	GCNNGC	3 cut(s)	324, 395, 739
CciI	TCATGA	1 cut(s)	225
Cfr13I	GGNCC	6 cut(s)	77, 118, 372, 413, 414, 652
Csp6I	GTAC	1 cut(s)	302
CspCI	CAANNNNNGTGG	2 cut(s)	55, 90
CviAII	CATG	5 cut(s)	70, 226, 323, 687, 808
CviQI	GTAC	1 cut(s)	302
DdeI	CTNAG	5 cut(s)	5, 39, 264, 275, 363
DpnI	GATC	1 cut(s)	618
DpnII	GATC	1 cut(s)	616
DrdI	GACNNNNNNGTC	1 cut(s)	235
DseDI	GACNNNNNNGTC	1 cut(s)	235
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
Eco24I	GRGCYC	2 cut(s)	417, 874
Eco47I	GGWCC	3 cut(s)	118, 372, 652
Eco57I	CTGAAG	1 cut(s)	824
EcoNI	CCTNNNNNAGG	1 cut(s)	84
EcoO109I	RGGNCCY	1 cut(s)	652
EcoT38I	GRGCYC	2 cut(s)	417, 874
FaeI	CATG	5 cut(s)	73, 229, 326, 690, 811
FalI	AAGNNNNNCTT	2 cut(s)	838, 870
FaqI	GGGAC	2 cut(s)	358, 461
FatI	CATG	5 cut(s)	69, 225, 322, 686, 807
FauNDI	CATATG	1 cut(s)	517
Fnu4HI	GCNGC	4 cut(s)	252, 759, 921, 1001
FokI	GGATG	2 cut(s)	319, 874
FriOI	GRGCYC	2 cut(s)	417, 874
Fsp4HI	GCNGC	4 cut(s)	252, 759, 921, 1001
FspBI	CTAG	2 cut(s)	714, 830
GluI	GCNGC	4 cut(s)	252, 759, 921, 1001
HaeIII	GGCC	3 cut(s)	65, 78, 415
HapII	CCGG	2 cut(s)	581, 891
Hin1II	CATG	5 cut(s)	73, 229, 326, 690, 811
HincII	GTYRAC	1 cut(s)	36
HindII	GTYRAC	1 cut(s)	36
HinfI	GANTC	1 cut(s)	717
HpaII	CCGG	2 cut(s)	581, 891
Hpy166II	GTNNAC	3 cut(s)	11, 36, 304
Hpy188I	TCNGA	2 cut(s)	907, 980
Hpy188III	TCNNGA	5 cut(s)	226, 529, 581, 714, 803
Hpy8I	GTNNAC	3 cut(s)	11, 36, 304
HpyAV	CCTTC	1 cut(s)	287
HpyCH4III	ACNGT	2 cut(s)	237, 984
HpyCH4IV	ACGT	1 cut(s)	667
HpyF10VI	GCNNNNNNNGC	3 cut(s)	323, 824, 850
HpyF3I	CTNAG	5 cut(s)	5, 39, 264, 275, 363
HpySE526I	ACGT	1 cut(s)	667
Hsp92II	CATG	5 cut(s)	73, 229, 326, 690, 811
Kpn2I	TCCGGA	1 cut(s)	580
Kzo9I	GATC	1 cut(s)	616
LmnI	GCTCC	2 cut(s)	390, 905
Lsp1109I	GCAGC	4 cut(s)	263, 770, 907, 1012
MaeI	CTAG	2 cut(s)	714, 830
MaeII	ACGT	1 cut(s)	667
MaeIII	GTNAC	2 cut(s)	152, 499
MalI	GATC	1 cut(s)	618
MboI	GATC	1 cut(s)	616
MboII	GAAGA	6 cut(s)	116, 431, 553, 830, 873, 876
MfeI	CAATTG	1 cut(s)	198
MhlI	GDGCHC	2 cut(s)	417, 874
MluCI	AATT	8 cut(s)	103, 198, 462, 484, 644, 949, 971, 1005
MlyI	GAGTC	1 cut(s)	726
MmeI	TCCRAC	1 cut(s)	930
MroI	TCCGGA	1 cut(s)	580
MseI	TTAA	3 cut(s)	20, 246, 473
MspI	CCGG	2 cut(s)	581, 891
MunI	CAATTG	1 cut(s)	198
MwoI	GCNNNNNNNGC	3 cut(s)	323, 824, 850
NdeI	CATATG	1 cut(s)	517
NdeII	GATC	1 cut(s)	616
NlaIII	CATG	5 cut(s)	73, 229, 326, 690, 811
NlaIV	GGNNCC	5 cut(s)	120, 374, 415, 852, 901
NmuCI	GTSAC	1 cut(s)	499
NspI	RCATGY	2 cut(s)	326, 690
NspV	TTCGAA	1 cut(s)	944
PaeI	GCATGC	1 cut(s)	326
PagI	TCATGA	1 cut(s)	225
PciI	ACATGT	1 cut(s)	686
PflMI	CCANNNNNTGG	1 cut(s)	646
PkrI	GCNGC	4 cut(s)	253, 760, 922, 1002
PleI	GAGTC	1 cut(s)	725
PpsI	GAGTC	1 cut(s)	725
PpuMI	RGGWCCY	1 cut(s)	652
PscI	ACATGT	1 cut(s)	686
PshBI	ATTAAT	1 cut(s)	246
Psp1406I	AACGTT	1 cut(s)	667
Psp5II	RGGWCCY	1 cut(s)	652
PspN4I	GGNNCC	5 cut(s)	120, 374, 415, 852, 901
PspOMI	GGGCCC	1 cut(s)	413
PspPI	GGNCC	6 cut(s)	77, 118, 372, 413, 414, 652
PspPPI	RGGWCCY	1 cut(s)	652
PstI	CTGCAG	1 cut(s)	18
RsaI	GTAC	1 cut(s)	303
RsaNI	GTAC	1 cut(s)	302
SaqAI	TTAA	3 cut(s)	20, 246, 473
SatI	GCNGC	4 cut(s)	252, 759, 921, 1001
Sau3AI	GATC	1 cut(s)	616
Sau96I	GGNCC	6 cut(s)	77, 118, 372, 413, 414, 652
SchI	GAGTC	1 cut(s)	726
SduI	GDGCHC	2 cut(s)	417, 874
SfcI	CTRYAG	1 cut(s)	14
SfuI	TTCGAA	1 cut(s)	944
SinI	GGWCC	3 cut(s)	118, 372, 652
SphI	GCATGC	1 cut(s)	326
Sse9I	AATT	8 cut(s)	103, 198, 462, 484, 644, 949, 971, 1005
SspMI	CTAG	2 cut(s)	714, 830
TaaI	ACNGT	2 cut(s)	237, 984
TaiI	ACGT	1 cut(s)	670
TaqI	TCGA	3 cut(s)	187, 720, 944
TasI	AATT	8 cut(s)	103, 198, 462, 484, 644, 949, 971, 1005
Tru1I	TTAA	3 cut(s)	20, 246, 473
Tru9I	TTAA	3 cut(s)	20, 246, 473
TscAI	CASTG	2 cut(s)	18, 901
TseFI	GTSAC	1 cut(s)	499
TseI	GCWGC	4 cut(s)	251, 758, 920, 1000
Tsp45I	GTSAC	1 cut(s)	499
TspDTI	ATGAA	7 cut(s)	126, 151, 645, 847, 876, 919, 983
TspRI	CASTG	2 cut(s)	18, 901
Van91I	CCANNNNNTGG	1 cut(s)	646
VpaK11BI	GGWCC	3 cut(s)	118, 372, 652
VspI	ATTAAT	1 cut(s)	246
XagI	CCTNNNNNAGG	1 cut(s)	84
XapI	RAATTY	3 cut(s)	103, 949, 971
XbaI	TCTAGA	1 cut(s)	713
XceI	RCATGY	2 cut(s)	326, 690
XspI	CTAG	2 cut(s)	714, 830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.