Rh6DG459000
ERF Family

Phosphorylase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000829
Physical Location & Seq
Forward (+)
62908501 .. 62910716
2216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG459000.1

Sequence Viewer

Length: 1080 bp
ATGGGAAGTTCATCAGTAGTAGGTTGGACTCTTCTTTATGCTATCTTGGCTCTTATCACAACCCAACAGCACTACTCAAATGCTGCCTTGTTGCCGGAGACACTCAAGTTGATCGAAGCGGCCAACGCCGATGGACCTTATTTAGGGTTGGTCATTCCAAACACTTACGAATTGAACCCTCTTCTTCGATCTCCAAACTTCACCTCAACTGACTTGATCATTGACTTTTCTGGAAGAAGATTCAGGTTTGGAACCATTGCTACAAAGAAAGTCATATTGGTTATGACAGGACTGGGAATGATTAATGCAGGAATAACCACTCAGCTTTTACTAAGCATGTTCAGTGTAGAAGGAGTGGTGCATTATGGCACAGCTGGCAATGTGAATCCAACCTTCAACCTTGCAGATGTGGTCATTCCTCAGTATTGGTCCCATACTGCTCTTTGGACCTGGCAAAGATATGGACATGGGCCTGAAGATGATTTGCCTCTAAATTCGATGAGAGATATTGGGTGCTTGAACCTTGCAAGTTACACAGTGAATGTGACAGATGGGAGCTCATATGATAACTTGTTGAACAATATTTGGTATCAGTCAGAGGAAGTCTTCCCCATTGATGGAACTCCAGAACAAAGAGATTTTACCTTTTGGGTCCCTGTTCATCCCTTCTACTATGAAATCTCCAAAAATCTAGAGGACCTGAAACTAGAAGGTTGCCTAAACTCAACATCATGTTTGTCACATACACCAAAAGTAGCAAGAGTACAAAGGGGAACAAGTGCAAGCATTTACCTGGATAATGCTGCTTACCGTGACTTCATATATGATAAGTTCAACGTAACTCCGGTGGACATGGAAAGTGCTTCTGTTGCTTTGATATGCCTTCAGCAAAGGGTGCCCTTCATAGCCATCAGGGCTCTCTCTGACTTGGCCGGCGGTGGCTCTGCGGATTCCAATGAGGCTGACACATTCAATACTCTCGCTTCCCATAATTCAGCCACAGTTGTTGTTGAATTTATCAAACAGTTATCAGCTGCTAGTTGTGCATCTATTATGTGTCCTAGTGATGATGTTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNP_UDP_1

Protein Analysis

359

Amino Acids

39.41

Weight (kDa)

4.74

Isoelectric Point (pI)

35.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNP_UDP_1 PF01048 49 - 341 4.9e-31 Phosphorylase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 895
AciI CCGC 3 cut(s) 119, 936, 947
AcoI YGGCCR 2 cut(s) 120, 930
AcsI RAATTY 2 cut(s) 493, 1013
AcuI CTGAAG 2 cut(s) 495, 869
AfaI GTAC 1 cut(s) 765
AfiI CCNNNNNNNGG 2 cut(s) 143, 617
AgsI TTSAA 7 cut(s) 175, 397, 520, 577, 835, 973, 1013
AjnI CCWGG 2 cut(s) 449, 792
AjuI GAANNNNNNNTTGG 2 cut(s) 260, 292
AluBI AGCT 4 cut(s) 325, 374, 558, 1034
AluI AGCT 4 cut(s) 325, 374, 558, 1034
Alw21I GWGCWC 1 cut(s) 560
Alw26I GTCTC 1 cut(s) 92
AoxI GGCC 3 cut(s) 120, 470, 930
ApeKI GCWGC 3 cut(s) 83, 803, 1034
ApoI RAATTY 2 cut(s) 493, 1013
AseI ATTAAT 1 cut(s) 303
AspS9I GGNCC 6 cut(s) 134, 429, 447, 470, 652, 697
AsuHPI GGTGA 1 cut(s) 193
AvaII GGWCC 5 cut(s) 134, 429, 447, 652, 697
BaeGI GKGCMC 1 cut(s) 900
BanI GGYRCC 1 cut(s) 895
BanII GRGCYC 2 cut(s) 560, 919
BbsI GAAGAC 1 cut(s) 598
Bbv12I GWGCWC 1 cut(s) 560
BbvI GCAGC 3 cut(s) 70, 790, 1021
BccI CCATC 4 cut(s) 125, 545, 611, 917
BciT130I CCWGG 2 cut(s) 451, 794
BclI TGATCA 1 cut(s) 216
BcoDI GTCTC 1 cut(s) 92
BfaI CTAG 4 cut(s) 692, 707, 1038, 1062
BglI GCCNNNNNGGC 1 cut(s) 914
BisI GCNGC 4 cut(s) 84, 120, 804, 1035
BlsI GCNGC 4 cut(s) 85, 121, 805, 1036
Bme1390I CCNGG 2 cut(s) 451, 794
Bme18I GGWCC 5 cut(s) 134, 429, 447, 652, 697
BmgT120I GGNCC 6 cut(s) 134, 429, 447, 470, 652, 697
BmiI GGNNCC 5 cut(s) 253, 431, 653, 654, 897
BmrFI CCNGG 2 cut(s) 451, 794
BmrI ACTGGG 1 cut(s) 302
BmsI GCATC 1 cut(s) 1055
BmuI ACTGGG 1 cut(s) 302
BpiI GAAGAC 1 cut(s) 598
BpmI CTGGAG 1 cut(s) 609
BpuEI CTTGAG 1 cut(s) 89
BsaWI WCCGGW 1 cut(s) 844
Bsc4I CCNNNNNNNGG 2 cut(s) 143, 617
Bse118I RCCGGY 1 cut(s) 932
Bse1I ACTGG 1 cut(s) 297
Bse3DI GCAATG 2 cut(s) 255, 385
BseBI CCWGG 2 cut(s) 451, 794
BseGI GGATG 1 cut(s) 661
BseLI CCNNNNNNNGG 2 cut(s) 143, 617
BseMI GCAATG 2 cut(s) 255, 385
BseMII CTCAG 2 cut(s) 335, 434
BseNI ACTGG 1 cut(s) 297
BseSI GKGCMC 1 cut(s) 900
BseXI GCAGC 3 cut(s) 70, 790, 1021
BshFI GGCC 3 cut(s) 122, 472, 932
BshNI GGYRCC 1 cut(s) 895
BsiHKAI GWGCWC 1 cut(s) 560
BsiSI CCGG 3 cut(s) 95, 845, 933
BslFI GGGAC 2 cut(s) 415, 638
BslI CCNNNNNNNGG 2 cut(s) 143, 617
BsmAI GTCTC 1 cut(s) 92
BsmFI GGGAC 2 cut(s) 415, 638
BsnI GGCC 3 cut(s) 122, 472, 932
Bsp1286I GDGCHC 3 cut(s) 560, 900, 919
Bsp143I GATC 3 cut(s) 111, 188, 216
BspACI CCGC 3 cut(s) 119, 936, 947
BspANI GGCC 3 cut(s) 122, 472, 932
BspCNI CTCAG 2 cut(s) 334, 433
BspLI GGNNCC 5 cut(s) 253, 431, 653, 654, 897
BspT107I GGYRCC 1 cut(s) 895
BsrDI GCAATG 2 cut(s) 255, 385
BsrFI RCCGGY 1 cut(s) 932
BsrI ACTGG 1 cut(s) 297
BssAI RCCGGY 1 cut(s) 932
BssMI GATC 3 cut(s) 111, 188, 216
Bst2UI CCWGG 2 cut(s) 451, 794
Bst4CI ACNGT 4 cut(s) 538, 812, 1003, 1026
Bst6I CTCTTC 2 cut(s) 36, 186
BstAPI GCANNNNNTGC 1 cut(s) 895
BstC8I GCNNGC 3 cut(s) 376, 784, 934
BstDEI CTNAG 3 cut(s) 321, 332, 420
BstENI CCTNNNNNAGG 1 cut(s) 141
BstF5I GGATG 1 cut(s) 661
BstKTI GATC 3 cut(s) 114, 191, 219
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 3 cut(s) 111, 188, 216
BstMWI GCNNNNNNNGC 7 cut(s) 47, 125, 375, 869, 895, 914, 1043
BstNI CCWGG 2 cut(s) 451, 794
BstNSI RCATGY 1 cut(s) 340
BstSCI CCNGG 2 cut(s) 449, 792
BstSLI GKGCMC 1 cut(s) 900
BstV1I GCAGC 3 cut(s) 70, 790, 1021
BstV2I GAAGAC 1 cut(s) 598
BsuRI GGCC 3 cut(s) 122, 472, 932
BtsCI GGATG 1 cut(s) 661
BtsIMutI CAGTG 2 cut(s) 349, 543
Cac8I GCNNGC 3 cut(s) 376, 784, 934
Cfr10I RCCGGY 1 cut(s) 932
Cfr13I GGNCC 6 cut(s) 134, 429, 447, 470, 652, 697
Csp6I GTAC 1 cut(s) 764
CspCI CAANNNNNGTGG 2 cut(s) 988, 1023
CviAII CATG 4 cut(s) 337, 467, 732, 853
CviQI GTAC 1 cut(s) 764
DdeI CTNAG 3 cut(s) 321, 332, 420
DpnI GATC 3 cut(s) 113, 190, 218
DpnII GATC 3 cut(s) 111, 188, 216
EaeI YGGCCR 2 cut(s) 120, 930
Eam1104I CTCTTC 2 cut(s) 36, 186
EarI CTCTTC 2 cut(s) 36, 186
Ecl136II GAGCTC 1 cut(s) 558
Eco24I GRGCYC 2 cut(s) 560, 919
Eco47I GGWCC 5 cut(s) 134, 429, 447, 652, 697
Eco53kI GAGCTC 1 cut(s) 558
Eco57I CTGAAG 2 cut(s) 495, 869
EcoICRI GAGCTC 1 cut(s) 558
EcoNI CCTNNNNNAGG 1 cut(s) 141
EcoO109I RGGNCCY 2 cut(s) 652, 697
EcoRII CCWGG 2 cut(s) 449, 792
EcoT38I GRGCYC 2 cut(s) 560, 919
FaeI CATG 4 cut(s) 340, 470, 735, 856
FaqI GGGAC 2 cut(s) 415, 638
FatI CATG 4 cut(s) 336, 466, 731, 852
FauNDI CATATG 1 cut(s) 562
FbaI TGATCA 1 cut(s) 216
Fnu4HI GCNGC 4 cut(s) 84, 120, 804, 1035
FokI GGATG 1 cut(s) 648
FriOI GRGCYC 2 cut(s) 560, 919
Fsp4HI GCNGC 4 cut(s) 84, 120, 804, 1035
FspBI CTAG 4 cut(s) 692, 707, 1038, 1062
GluI GCNGC 4 cut(s) 84, 120, 804, 1035
GsuI CTGGAG 1 cut(s) 609
HaeIII GGCC 3 cut(s) 122, 472, 932
HapII CCGG 3 cut(s) 95, 845, 933
Hin1II CATG 4 cut(s) 340, 470, 735, 856
HincII GTYRAC 1 cut(s) 1075
HindII GTYRAC 1 cut(s) 1075
HinfI GANTC 4 cut(s) 28, 240, 385, 950
HpaI GTTAAC 1 cut(s) 1075
HpaII CCGG 3 cut(s) 95, 845, 933
HphI GGTGA 1 cut(s) 193
Hpy166II GTNNAC 2 cut(s) 850, 1075
Hpy188I TCNGA 2 cut(s) 598, 925
Hpy188III TCNNGA 3 cut(s) 231, 626, 692
Hpy8I GTNNAC 2 cut(s) 850, 1075
HpyAV CCTTC 6 cut(s) 344, 403, 676, 704, 893, 910
HpyCH4III ACNGT 4 cut(s) 538, 812, 1003, 1026
HpyCH4IV ACGT 1 cut(s) 837
HpyCH4V TGCA 6 cut(s) 308, 361, 404, 527, 782, 1046
HpyF10VI GCNNNNNNNGC 7 cut(s) 47, 125, 375, 869, 895, 914, 1043
HpyF3I CTNAG 3 cut(s) 321, 332, 420
HpySE526I ACGT 1 cut(s) 837
Hsp92II CATG 4 cut(s) 340, 470, 735, 856
KflI GGGWCCC 1 cut(s) 652
KroI GCCGGC 1 cut(s) 932
KroNI GCCGGC 1 cut(s) 934
Ksp22I TGATCA 1 cut(s) 216
KspAI GTTAAC 1 cut(s) 1075
Kzo9I GATC 3 cut(s) 111, 188, 216
LmnI GCTCC 1 cut(s) 555
Lsp1109I GCAGC 3 cut(s) 70, 790, 1021
LweI GCATC 1 cut(s) 1055
MaeI CTAG 4 cut(s) 692, 707, 1038, 1062
MaeII ACGT 1 cut(s) 837
MaeIII GTNAC 5 cut(s) 530, 544, 738, 812, 838
MalI GATC 3 cut(s) 113, 190, 218
MboI GATC 3 cut(s) 111, 188, 216
MboII GAAGA 7 cut(s) 23, 173, 176, 246, 249, 488, 598
MhlI GDGCHC 3 cut(s) 560, 900, 919
MluCI AATT 4 cut(s) 170, 493, 991, 1013
MlyI GAGTC 1 cut(s) 22
MmeI TCCRAC 2 cut(s) 5, 413
MnlI CCTC 7 cut(s) 189, 214, 429, 498, 592, 688, 952
MroNI GCCGGC 1 cut(s) 932
MseI TTAA 2 cut(s) 303, 1074
MspA1I CMGCKG 2 cut(s) 374, 1034
MspI CCGG 3 cut(s) 95, 845, 933
MspR9I CCNGG 2 cut(s) 451, 794
MvaI CCWGG 2 cut(s) 451, 794
MwoI GCNNNNNNNGC 7 cut(s) 47, 125, 375, 869, 895, 914, 1043
NaeI GCCGGC 1 cut(s) 934
NdeI CATATG 1 cut(s) 562
NdeII GATC 3 cut(s) 111, 188, 216
NgoMIV GCCGGC 1 cut(s) 932
NlaIII CATG 4 cut(s) 340, 470, 735, 856
NlaIV GGNNCC 5 cut(s) 253, 431, 653, 654, 897
NmuCI GTSAC 3 cut(s) 544, 738, 812
NspI RCATGY 1 cut(s) 340
PdiI GCCGGC 1 cut(s) 934
PfeI GAWTC 3 cut(s) 240, 385, 950
PkrI GCNGC 4 cut(s) 85, 121, 805, 1036
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
PpuMI RGGWCCY 2 cut(s) 652, 697
PshBI ATTAAT 1 cut(s) 303
Psp124BI GAGCTC 1 cut(s) 560
Psp5II RGGWCCY 2 cut(s) 652, 697
Psp6I CCWGG 2 cut(s) 449, 792
PspGI CCWGG 2 cut(s) 449, 792
PspN4I GGNNCC 5 cut(s) 253, 431, 653, 654, 897
PspPI GGNCC 6 cut(s) 134, 429, 447, 470, 652, 697
PspPPI RGGWCCY 2 cut(s) 652, 697
PsrI GAACNNNNNNTAC 2 cut(s) 244, 276
PvuII CAGCTG 2 cut(s) 374, 1034
RsaI GTAC 1 cut(s) 765
RsaNI GTAC 1 cut(s) 764
SacI GAGCTC 1 cut(s) 560
SaqAI TTAA 2 cut(s) 303, 1074
SatI GCNGC 4 cut(s) 84, 120, 804, 1035
Sau3AI GATC 3 cut(s) 111, 188, 216
Sau96I GGNCC 6 cut(s) 134, 429, 447, 470, 652, 697
SchI GAGTC 1 cut(s) 22
ScrFI CCNGG 2 cut(s) 451, 794
SduI GDGCHC 3 cut(s) 560, 900, 919
SfaNI GCATC 1 cut(s) 1055
SinI GGWCC 5 cut(s) 134, 429, 447, 652, 697
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse9I AATT 4 cut(s) 170, 493, 991, 1013
SsiI CCGC 3 cut(s) 119, 936, 947
SspI AATATT 1 cut(s) 583
SspMI CTAG 4 cut(s) 692, 707, 1038, 1062
SstI GAGCTC 1 cut(s) 560
StyD4I CCNGG 2 cut(s) 449, 792
TaaI ACNGT 4 cut(s) 538, 812, 1003, 1026
TaiI ACGT 1 cut(s) 840
TaqI TCGA 3 cut(s) 114, 187, 497
TasI AATT 4 cut(s) 170, 493, 991, 1013
TatI WGTACW 1 cut(s) 763
TauI GCSGC 1 cut(s) 122
TfiI GAWTC 3 cut(s) 240, 385, 950
Tru1I TTAA 2 cut(s) 303, 1074
Tru9I TTAA 2 cut(s) 303, 1074
TscAI CASTG 2 cut(s) 349, 543
TseFI GTSAC 3 cut(s) 544, 738, 812
TseI GCWGC 3 cut(s) 83, 803, 1034
Tsp45I GTSAC 3 cut(s) 544, 738, 812
TspDTI ATGAA 4 cut(s) 650, 690, 808, 892
TspRI CASTG 2 cut(s) 349, 543
VpaK11BI GGWCC 5 cut(s) 134, 429, 447, 652, 697
VspI ATTAAT 1 cut(s) 303
XagI CCTNNNNNAGG 1 cut(s) 141
XapI RAATTY 2 cut(s) 493, 1013
XbaI TCTAGA 1 cut(s) 691
XceI RCATGY 1 cut(s) 340
XspI CTAG 4 cut(s) 692, 707, 1038, 1062
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.