Rh6CG472800
ERF Family

Phosphorylase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000829
Physical Location & Seq
Forward (+)
64258099 .. 64260010
1912 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG472800.1

Sequence Viewer

Length: 1074 bp
ATGAGGGTGGCTTGGCCTTGTTTAGTTGTTTATGCTATGAGCATCGTAGTAGTGCAGGCTGCACTCTCAGTAGAGACGTTGAAATTGATCGAAGAGACCAACGATAGAGGCCCTTATTTAGGGTTGGTCATTCCTAATTCTTTCGAAATGAACCCTCTTCTTCAATCTCCAGATTTCATTTCAGCTAACCTGACTATAGATTTTTCTGGACGGAGATTTCGGTTTGGAACAATTTCTGAAAAGAAAGTCGTATTAGTCATGACAGGACTCTCCATGATTAATGCAGGAATAACCACTCAGCTCTTACTAAGCCTATTCGATATAGAAGGAGTGGTGCATTGTGGCATAGCTGGCAATGCAAACCCAGATCTCCATCTTGCAGATGTGGTCATTCCTCAGTACTGGGCGCATACCGCTCTTTGGAACTGGCAGAGATATGGAAATGGGCCGGAAAATGAGCTACCCCTTGAATCACGAGGAGACTACACCAGAGAAATTGGCTACTTAAAACTTGCAAACTATACAATCAACGTGACAGACTCATCTGACAACCTGTTGAGCAACATTTGGTATCAACCGGAGGAAGTCTTCCCCGTCAATGGAACTCCAGAACATAGAGAGCATGCCTTTTGGGTCCCTGTTGATCCCTTCTACTATGAAATTTCCCAGAAGCTAGAGGAGATGAAACTGGAGGGTTGCCTAAACTCAACAACATGTTTGTCACATATACCAAAAGTGGCGAGAGTTCAAAGGGGAACAAGTGCAAGCATTTACCTGGACAATGCTGCTTACCGCGACTTGATATACAATAAGTTCAACATAACTCCGGTGGACATGGAAAGTGCTTCCGTTGCCTTGATATGTCTTCAGCAAAAGGTGCCTTTCATTGTCATCAGGGCTCTCTCTGACTTGGCCGGCGGTGGCTCTGCGAATTCGAATGAGGCTGATACTTTCATCGCTCTTGCTTCCAATAATTCAGTCACAGTTCTTTTGGAATTTGTCAAACATTTATCAGCTGTTACTGTCTCACGTACCGAGCAGCATCTAGCTAGGTGTTGTGGTGATGAATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNP_UDP_1

Protein Analysis

357

Amino Acids

39.66

Weight (kDa)

5.0

Isoelectric Point (pI)

31.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNP_UDP_1 PF01048 41 - 335 5e-29 Phosphorylase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 877
AccBSI CCGCTC 1 cut(s) 416
AccII CGCG 1 cut(s) 795
AciI CCGC 3 cut(s) 414, 793, 918
AclWI GGATC 1 cut(s) 638
AcoI YGGCCR 1 cut(s) 912
AcsI RAATTY 3 cut(s) 660, 931, 995
AcuI CTGAAG 1 cut(s) 851
AfaI GTAC 2 cut(s) 401, 1033
AfiI CCNNNNNNNGG 3 cut(s) 119, 420, 599
AflIII ACRYGT 1 cut(s) 713
AgsI TTSAA 5 cut(s) 82, 164, 470, 749, 817
AjnI CCWGG 1 cut(s) 774
AluBI AGCT 7 cut(s) 185, 301, 350, 460, 673, 1016, 1049
AluI AGCT 7 cut(s) 185, 301, 350, 460, 673, 1016, 1049
Alw26I GTCTC 4 cut(s) 68, 89, 474, 1030
AlwI GGATC 1 cut(s) 638
AoxI GGCC 4 cut(s) 14, 109, 446, 912
ApeKI GCWGC 3 cut(s) 59, 785, 1039
ApoI RAATTY 3 cut(s) 660, 931, 995
ArsI GACNNNNNNTTYG 2 cut(s) 201, 233
AseI ATTAAT 1 cut(s) 279
Asp700I GAANNNNTTC 1 cut(s) 232
AspLEI GCGC 1 cut(s) 409
AspS9I GGNCC 3 cut(s) 110, 446, 634
AsuHPI GGTGA 1 cut(s) 1073
AsuII TTCGAA 2 cut(s) 144, 935
AvaII GGWCC 1 cut(s) 634
BanI GGYRCC 1 cut(s) 877
BanII GRGCYC 1 cut(s) 901
BauI CACGAG 1 cut(s) 474
BbsI GAAGAC 2 cut(s) 580, 857
BbvI GCAGC 3 cut(s) 46, 772, 1051
BccI CCATC 1 cut(s) 381
BciT130I CCWGG 1 cut(s) 776
BcoDI GTCTC 4 cut(s) 68, 89, 474, 1030
BfaI CTAG 3 cut(s) 674, 1046, 1050
BfmI CTRYAG 1 cut(s) 195
BglII AGATCT 1 cut(s) 367
BisI GCNGC 3 cut(s) 60, 786, 1040
BlsI GCNGC 3 cut(s) 61, 787, 1041
BmcAI AGTACT 1 cut(s) 401
Bme1390I CCNGG 1 cut(s) 776
Bme18I GGWCC 1 cut(s) 634
BmgT120I GGNCC 3 cut(s) 110, 446, 634
BmiI GGNNCC 3 cut(s) 635, 636, 879
BmrFI CCNGG 1 cut(s) 776
BmrI ACTGGG 1 cut(s) 412
BmsI GCATC 2 cut(s) 51, 1051
BmuI ACTGGG 1 cut(s) 412
BpiI GAAGAC 2 cut(s) 580, 857
BpmI CTGGAG 3 cut(s) 153, 591, 710
Bpu14I TTCGAA 2 cut(s) 144, 935
BsaAI YACGTR 1 cut(s) 1031
BsaBI GATNNNNATC 1 cut(s) 372
BsaI GGTCTC 1 cut(s) 89
BsaWI WCCGGW 2 cut(s) 577, 826
Bsc4I CCNNNNNNNGG 3 cut(s) 119, 420, 599
Bse118I RCCGGY 1 cut(s) 914
Bse1I ACTGG 3 cut(s) 407, 431, 693
Bse3DI GCAATG 1 cut(s) 361
Bse8I GATNNNNATC 1 cut(s) 372
BseBI CCWGG 1 cut(s) 776
BseJI GATNNNNATC 1 cut(s) 372
BseLI CCNNNNNNNGG 3 cut(s) 119, 420, 599
BseMI GCAATG 1 cut(s) 361
BseMII CTCAG 3 cut(s) 81, 311, 410
BseNI ACTGG 3 cut(s) 407, 431, 693
BseRI GAGGAG 2 cut(s) 492, 692
BseXI GCAGC 3 cut(s) 46, 772, 1051
BsgI GTGCAG 2 cut(s) 45, 74
Bsh1236I CGCG 1 cut(s) 795
BshFI GGCC 4 cut(s) 16, 111, 448, 914
BshNI GGYRCC 1 cut(s) 877
BsiSI CCGG 4 cut(s) 449, 578, 827, 915
BslFI GGGAC 1 cut(s) 620
BslI CCNNNNNNNGG 3 cut(s) 119, 420, 599
BsmAI GTCTC 4 cut(s) 68, 89, 474, 1030
BsmBI CGTCTC 1 cut(s) 68
BsmFI GGGAC 1 cut(s) 620
BsnI GGCC 4 cut(s) 16, 111, 448, 914
Bso31I GGTCTC 1 cut(s) 89
Bsp119I TTCGAA 2 cut(s) 144, 935
Bsp1286I GDGCHC 1 cut(s) 901
Bsp143I GATC 3 cut(s) 87, 367, 643
BspACI CCGC 3 cut(s) 414, 793, 918
BspANI GGCC 4 cut(s) 16, 111, 448, 914
BspCNI CTCAG 3 cut(s) 80, 310, 409
BspFNI CGCG 1 cut(s) 795
BspHI TCATGA 1 cut(s) 258
BspLI GGNNCC 3 cut(s) 635, 636, 879
BspPI GGATC 1 cut(s) 638
BspT104I TTCGAA 2 cut(s) 144, 935
BspT107I GGYRCC 1 cut(s) 877
BspTNI GGTCTC 1 cut(s) 89
BsrBI CCGCTC 1 cut(s) 416
BsrDI GCAATG 1 cut(s) 361
BsrFI RCCGGY 1 cut(s) 914
BsrI ACTGG 3 cut(s) 407, 431, 693
BssAI RCCGGY 1 cut(s) 914
BssMI GATC 3 cut(s) 87, 367, 643
BssSI CACGAG 1 cut(s) 474
Bst2BI CACGAG 1 cut(s) 474
Bst2UI CCWGG 1 cut(s) 776
Bst4CI ACNGT 2 cut(s) 985, 1024
Bst6I CTCTTC 2 cut(s) 87, 162
BstAPI GCANNNNNTGC 1 cut(s) 877
BstBAI YACGTR 1 cut(s) 1031
BstBI TTCGAA 2 cut(s) 144, 935
BstC8I GCNNGC 5 cut(s) 57, 352, 624, 766, 916
BstDEI CTNAG 4 cut(s) 67, 297, 308, 396
BstENI CCTNNNNNAGG 1 cut(s) 117
BstFNI CGCG 1 cut(s) 795
BstHHI GCGC 1 cut(s) 409
BstKTI GATC 3 cut(s) 90, 370, 646
BstMAI GTCTC 4 cut(s) 68, 89, 474, 1030
BstMBI GATC 3 cut(s) 87, 367, 643
BstMWI GCNNNNNNNGC 5 cut(s) 351, 356, 413, 851, 877
BstNI CCWGG 1 cut(s) 776
BstNSI RCATGY 2 cut(s) 626, 717
BstSCI CCNGG 1 cut(s) 774
BstSFI CTRYAG 1 cut(s) 195
BstUI CGCG 1 cut(s) 795
BstV1I GCAGC 3 cut(s) 46, 772, 1051
BstV2I GAAGAC 2 cut(s) 580, 857
BstX2I RGATCY 1 cut(s) 367
BstYI RGATCY 1 cut(s) 367
BsuRI GGCC 4 cut(s) 16, 111, 448, 914
BtgZI GCGATG 1 cut(s) 940
Cac8I GCNNGC 5 cut(s) 57, 352, 624, 766, 916
CciI TCATGA 1 cut(s) 258
CfoI GCGC 1 cut(s) 409
Cfr10I RCCGGY 1 cut(s) 914
Cfr13I GGNCC 3 cut(s) 110, 446, 634
Csp6I GTAC 2 cut(s) 400, 1032
CviAII CATG 5 cut(s) 259, 274, 623, 714, 835
CviQI GTAC 2 cut(s) 400, 1032
DdeI CTNAG 4 cut(s) 67, 297, 308, 396
DpnI GATC 3 cut(s) 89, 369, 645
DpnII GATC 3 cut(s) 87, 367, 643
EaeI YGGCCR 1 cut(s) 912
Eam1104I CTCTTC 2 cut(s) 87, 162
EarI CTCTTC 2 cut(s) 87, 162
Eco24I GRGCYC 1 cut(s) 901
Eco31I GGTCTC 1 cut(s) 89
Eco47I GGWCC 1 cut(s) 634
Eco57I CTGAAG 1 cut(s) 851
EcoNI CCTNNNNNAGG 1 cut(s) 117
EcoO109I RGGNCCY 2 cut(s) 110, 634
EcoRI GAATTC 1 cut(s) 931
EcoRII CCWGG 1 cut(s) 774
EcoT38I GRGCYC 1 cut(s) 901
Esp3I CGTCTC 1 cut(s) 68
FaeI CATG 5 cut(s) 262, 277, 626, 717, 838
FaqI GGGAC 1 cut(s) 620
FatI CATG 5 cut(s) 258, 273, 622, 713, 834
Fnu4HI GCNGC 3 cut(s) 60, 786, 1040
FriOI GRGCYC 1 cut(s) 901
Fsp4HI GCNGC 3 cut(s) 60, 786, 1040
FspBI CTAG 3 cut(s) 674, 1046, 1050
GlaI GCGC 1 cut(s) 408
GluI GCNGC 3 cut(s) 60, 786, 1040
GsuI CTGGAG 3 cut(s) 153, 591, 710
HaeIII GGCC 4 cut(s) 16, 111, 448, 914
HapII CCGG 4 cut(s) 449, 578, 827, 915
HhaI GCGC 1 cut(s) 409
Hin1II CATG 5 cut(s) 262, 277, 626, 717, 838
Hin6I GCGC 1 cut(s) 407
HinP1I GCGC 1 cut(s) 407
HinfI GANTC 3 cut(s) 267, 470, 539
HpaII CCGG 4 cut(s) 449, 578, 827, 915
HphI GGTGA 1 cut(s) 1073
Hpy166II GTNNAC 1 cut(s) 832
Hpy188I TCNGA 3 cut(s) 238, 547, 907
Hpy188III TCNNGA 5 cut(s) 170, 207, 259, 474, 608
Hpy8I GTNNAC 1 cut(s) 832
HpyAV CCTTC 2 cut(s) 320, 658
HpyCH4III ACNGT 2 cut(s) 985, 1024
HpyCH4IV ACGT 3 cut(s) 77, 531, 1030
HpyCH4V TGCA 8 cut(s) 55, 62, 284, 337, 359, 380, 515, 764
HpyF10VI GCNNNNNNNGC 5 cut(s) 351, 356, 413, 851, 877
HpyF3I CTNAG 4 cut(s) 67, 297, 308, 396
HpySE526I ACGT 3 cut(s) 77, 531, 1030
Hsp92II CATG 5 cut(s) 262, 277, 626, 717, 838
HspAI GCGC 1 cut(s) 407
KflI GGGWCCC 1 cut(s) 634
KroI GCCGGC 1 cut(s) 914
KroNI GCCGGC 1 cut(s) 916
Kzo9I GATC 3 cut(s) 87, 367, 643
Lsp1109I GCAGC 3 cut(s) 46, 772, 1051
LweI GCATC 2 cut(s) 51, 1051
MaeI CTAG 3 cut(s) 674, 1046, 1050
MaeII ACGT 3 cut(s) 77, 531, 1030
MaeIII GTNAC 4 cut(s) 532, 720, 979, 1018
MalI GATC 3 cut(s) 89, 369, 645
MbiI CCGCTC 1 cut(s) 416
MboI GATC 3 cut(s) 87, 367, 643
MboII GAAGA 5 cut(s) 104, 149, 152, 580, 857
MflI RGATCY 1 cut(s) 367
MhlI GDGCHC 1 cut(s) 901
MluCI AATT 9 cut(s) 83, 136, 231, 495, 660, 931, 973, 995, 1067
MlyI GAGTC 2 cut(s) 261, 533
MnlI CCTC 8 cut(s) 101, 165, 405, 470, 574, 670, 685, 934
MroNI GCCGGC 1 cut(s) 914
MroXI GAANNNNTTC 1 cut(s) 232
MseI TTAA 2 cut(s) 279, 506
MspA1I CMGCKG 1 cut(s) 1016
MspI CCGG 4 cut(s) 449, 578, 827, 915
MspR9I CCNGG 1 cut(s) 776
MvaI CCWGG 1 cut(s) 776
MvnI CGCG 1 cut(s) 795
MwoI GCNNNNNNNGC 5 cut(s) 351, 356, 413, 851, 877
NaeI GCCGGC 1 cut(s) 916
NdeII GATC 3 cut(s) 87, 367, 643
NgoMIV GCCGGC 1 cut(s) 914
NlaIII CATG 5 cut(s) 262, 277, 626, 717, 838
NlaIV GGNNCC 3 cut(s) 635, 636, 879
NmuCI GTSAC 3 cut(s) 532, 720, 979
NspI RCATGY 2 cut(s) 626, 717
NspV TTCGAA 2 cut(s) 144, 935
PaeI GCATGC 1 cut(s) 626
PagI TCATGA 1 cut(s) 258
PciI ACATGT 1 cut(s) 713
PdiI GCCGGC 1 cut(s) 916
PdmI GAANNNNTTC 1 cut(s) 232
PfeI GAWTC 1 cut(s) 470
PkrI GCNGC 3 cut(s) 61, 787, 1041
PleI GAGTC 2 cut(s) 261, 533
PpsI GAGTC 2 cut(s) 261, 533
Ppu21I YACGTR 1 cut(s) 1031
PpuMI RGGWCCY 1 cut(s) 634
PscI ACATGT 1 cut(s) 713
PshBI ATTAAT 1 cut(s) 279
Psp5II RGGWCCY 1 cut(s) 634
Psp6I CCWGG 1 cut(s) 774
PspGI CCWGG 1 cut(s) 774
PspN4I GGNNCC 3 cut(s) 635, 636, 879
PspPI GGNCC 3 cut(s) 110, 446, 634
PspPPI RGGWCCY 1 cut(s) 634
PsuI RGATCY 1 cut(s) 367
PvuII CAGCTG 1 cut(s) 1016
RsaI GTAC 2 cut(s) 401, 1033
RsaNI GTAC 2 cut(s) 400, 1032
SaqAI TTAA 2 cut(s) 279, 506
SatI GCNGC 3 cut(s) 60, 786, 1040
Sau3AI GATC 3 cut(s) 87, 367, 643
Sau96I GGNCC 3 cut(s) 110, 446, 634
ScaI AGTACT 1 cut(s) 401
SchI GAGTC 2 cut(s) 261, 533
ScrFI CCNGG 1 cut(s) 776
SduI GDGCHC 1 cut(s) 901
SfaNI GCATC 2 cut(s) 51, 1051
SfcI CTRYAG 1 cut(s) 195
SfuI TTCGAA 2 cut(s) 144, 935
SinI GGWCC 1 cut(s) 634
SphI GCATGC 1 cut(s) 626
Sse9I AATT 9 cut(s) 83, 136, 231, 495, 660, 931, 973, 995, 1067
SsiI CCGC 3 cut(s) 414, 793, 918
SspMI CTAG 3 cut(s) 674, 1046, 1050
StyD4I CCNGG 1 cut(s) 774
TaaI ACNGT 2 cut(s) 985, 1024
TaiI ACGT 3 cut(s) 80, 534, 1033
TaqI TCGA 4 cut(s) 90, 144, 318, 935
TasI AATT 9 cut(s) 83, 136, 231, 495, 660, 931, 973, 995, 1067
TatI WGTACW 1 cut(s) 399
TfiI GAWTC 1 cut(s) 470
Tru1I TTAA 2 cut(s) 279, 506
Tru9I TTAA 2 cut(s) 279, 506
TseFI GTSAC 3 cut(s) 532, 720, 979
TseI GCWGC 3 cut(s) 59, 785, 1039
Tsp45I GTSAC 3 cut(s) 532, 720, 979
TspDTI ATGAA 6 cut(s) 164, 166, 672, 698, 874, 943
TspGWI ACGGA 2 cut(s) 226, 838
VpaK11BI GGWCC 1 cut(s) 634
VspI ATTAAT 1 cut(s) 279
XagI CCTNNNNNAGG 1 cut(s) 117
XapI RAATTY 3 cut(s) 660, 931, 995
XceI RCATGY 2 cut(s) 626, 717
XmnI GAANNNNTTC 1 cut(s) 232
XspI CTAG 3 cut(s) 674, 1046, 1050
ZrmI AGTACT 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.