Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000829

Physical Location & Seq

Genomic Coordinates Reverse (-)

26343145 .. 26343480

Gene Structure 336 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g35741.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGTTTGCACCATACTCCAAAAGTGGCTTTAGTCGACAGGGGAACAAGTGCCAGCATTTTCGATTCCTATCCAACGCTGCTTACCGTAGCTTCTTATATGCCGAGTTCAACATTAGCCCTTTGGACATGGAAAGCGCTTCTGTTGCCTTGATATGTCTTCAGCAAAGGGCGCCTTTCATTGCAATCAGGGCTCTCTCTTCTGGTCTAACCGGAGGTGGCTCCAGTGATCCCACAGAAGCTGGCAAGTTCATTAGCCTCGCTTCGAAAAATTCAGTTACAGCTGTTGTGGAATTTATCAAACAGTTATCACTTTATCAGATGCTAATTTCACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNP_UDP_1

Protein Analysis

112

Amino Acids

12.12

Weight (kDa)

9.34

Isoelectric Point (pI)

45.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PNP_UDP_1	PF01048	21 - 100	1.5e-08	Phosphorylase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28940 AT4G28940
fragaria_vesca	FvH4_1g05530 FvH4_2g35741 FvH4_2g35750 FvH4_2g35760 FvH4_2g35761 FvH4_2g35762
malus_domestica	MD15G1095100.v1.1 MD15G1095200.v1.1 MD15G1095300.v1.1 MD15G1191300.v1.1
prunus_persica	Prupe.1G450100_v2.0.a1 Prupe.1G450200_v2.0.a1 Prupe.7G225900_v2.0.a1 Prupe.7G225900_v2.0.a1 Prupe.7G225900_v2.0.a1
pyrus_communis	pycom15g08760 pycom15g08770 pycom15g17130
rosa_chinensis	RchiOBHm_Chr1g0336711 RchiOBHm_Chr2g0091231 RchiOBHm_Chr6g0259261 RchiOBHm_Chr6g0259271 RchiOBHm_Chr6g0306011 RchiOBHm_Chr6g0306021
rosa_laevigata	RLG00000010830 RLG00000010831 RLG00000010832 RLG00000014544 RLG00000016193 RLG00000029340
rosa_multiflora	Rmu_sc0002270.1_g000016 Rmu_sc0011974.1_g000004 Rmu_sc0020534.1_g000001 Rmu_sc0035114.1_g000001 Rmu_sc0036553.1_g000001 Rmu_ssc0000050.1_g000090
rosa_roxburghii	Rroxscaffold_2G00150370 Rroxscaffold_7G00162110 Rroxscaffold_7G00162130
rosa_rugosa	Rorug02G0014600 Rorug06G0346400 Rorug06G0346600
rosa_samantha	Rh2AG060400 Rh2BG059100 Rh2CG060900 Rh2DG059700 Rh6AG103200 Rh6AG458200 Rh6AG458400 Rh6BG095600 Rh6BG442400 Rh6BG442500 Rh6BG442600 Rh6BG442700 Rh6CG092500 Rh6CG472700 Rh6CG472800 Rh6CG472900 Rh6DG086500 Rh6DG458800 Rh6DG459000 Rh6DG459100
rosa_wichuraiana	Rw2G004950 Rw6G008910 Rw6G039960 Rw6G039970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	169
AccI	GTMKAC	1 cut(s)	34
AclWI	GGATC	1 cut(s)	221
AcsI	RAATTY	2 cut(s)	268, 290
AcuI	CTGAAG	1 cut(s)	143
AcyI	GRCGYC	1 cut(s)	170
AfeI	AGCGCT	1 cut(s)	136
AgsI	TTSAA	1 cut(s)	109
AluBI	AGCT	3 cut(s)	90, 239, 281
AluI	AGCT	3 cut(s)	90, 239, 281
AlwI	GGATC	1 cut(s)	221
AlwNI	CAGNNNCTG	1 cut(s)	239
Aor51HI	AGCGCT	1 cut(s)	136
ApeKI	GCWGC	1 cut(s)	77
ApoI	RAATTY	2 cut(s)	268, 290
AspLEI	GCGC	2 cut(s)	137, 172
AsuII	TTCGAA	1 cut(s)	263
BanI	GGYRCC	1 cut(s)	169
BanII	GRGCYC	1 cut(s)	193
BbsI	GAAGAC	1 cut(s)	149
BbvI	GCAGC	1 cut(s)	64
BfoI	RGCGCY	2 cut(s)	138, 173
BisI	GCNGC	1 cut(s)	78
BlsI	GCNGC	1 cut(s)	79
BmiI	GGNNCC	2 cut(s)	171, 220
BmsI	GCATC	1 cut(s)	309
BpiI	GAAGAC	1 cut(s)	149
BpmI	CTGGAG	1 cut(s)	205
Bpu14I	TTCGAA	1 cut(s)	263
BsaBI	GATNNNNATC	1 cut(s)	67
BsaHI	GRCGYC	1 cut(s)	170
BsaWI	WCCGGW	1 cut(s)	209
Bse1I	ACTGG	1 cut(s)	222
Bse3DI	GCAATG	1 cut(s)	177
Bse8I	GATNNNNATC	1 cut(s)	67
BseJI	GATNNNNATC	1 cut(s)	67
BseMI	GCAATG	1 cut(s)	177
BseNI	ACTGG	1 cut(s)	222
BseXI	GCAGC	1 cut(s)	64
BshNI	GGYRCC	1 cut(s)	169
BsiSI	CCGG	1 cut(s)	210
Bsp119I	TTCGAA	1 cut(s)	263
Bsp1286I	GDGCHC	1 cut(s)	193
Bsp143I	GATC	1 cut(s)	226
BspLI	GGNNCC	2 cut(s)	171, 220
BspPI	GGATC	1 cut(s)	221
BspT104I	TTCGAA	1 cut(s)	263
BspT107I	GGYRCC	1 cut(s)	169
BsrDI	GCAATG	1 cut(s)	177
BsrI	ACTGG	1 cut(s)	222
BssMI	GATC	1 cut(s)	226
BssNI	GRCGYC	1 cut(s)	170
Bst4CI	ACNGT	2 cut(s)	86, 303
Bst6I	CTCTTC	1 cut(s)	202
BstACI	GRCGYC	1 cut(s)	170
BstBI	TTCGAA	1 cut(s)	263
BstC8I	GCNNGC	2 cut(s)	53, 241
BstH2I	RGCGCY	2 cut(s)	138, 173
BstHHI	GCGC	2 cut(s)	137, 172
BstKTI	GATC	1 cut(s)	229
BstMBI	GATC	1 cut(s)	226
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 169, 188
BstV1I	GCAGC	1 cut(s)	64
BstV2I	GAAGAC	1 cut(s)	149
BtsIMutI	CAGTG	1 cut(s)	229
Cac8I	GCNNGC	2 cut(s)	53, 241
CaiI	CAGNNNCTG	1 cut(s)	239
CfoI	GCGC	2 cut(s)	137, 172
CviAII	CATG	1 cut(s)	127
CviJI	RGCY	8 cut(s)	27, 90, 117, 191, 219, 239, 255, 281
CviKI_1	RGCY	8 cut(s)	27, 90, 117, 191, 219, 239, 255, 281
DinI	GGCGCC	1 cut(s)	171
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
Eam1104I	CTCTTC	1 cut(s)	202
EarI	CTCTTC	1 cut(s)	202
Eco24I	GRGCYC	1 cut(s)	193
Eco47III	AGCGCT	1 cut(s)	136
Eco57I	CTGAAG	1 cut(s)	143
EcoT38I	GRGCYC	1 cut(s)	193
EgeI	GGCGCC	1 cut(s)	171
EheI	GGCGCC	1 cut(s)	171
FaeI	CATG	1 cut(s)	130
FaiI	YATR	5 cut(s)	13, 97, 99, 128, 154
FalI	AAGNNNNNCTT	2 cut(s)	157, 189
FatI	CATG	1 cut(s)	126
FblI	GTMKAC	1 cut(s)	34
Fnu4HI	GCNGC	1 cut(s)	78
FriOI	GRGCYC	1 cut(s)	193
Fsp4HI	GCNGC	1 cut(s)	78
GlaI	GCGC	2 cut(s)	136, 171
GluI	GCNGC	1 cut(s)	78
GsuI	CTGGAG	1 cut(s)	205
HaeII	RGCGCY	2 cut(s)	138, 173
HapII	CCGG	1 cut(s)	210
HhaI	GCGC	2 cut(s)	137, 172
Hin1I	GRCGYC	1 cut(s)	170
Hin1II	CATG	1 cut(s)	130
Hin6I	GCGC	2 cut(s)	135, 170
HinP1I	GCGC	2 cut(s)	135, 170
HincII	GTYRAC	1 cut(s)	35
HindII	GTYRAC	1 cut(s)	35
HinfI	GANTC	1 cut(s)	63
HpaII	CCGG	1 cut(s)	210
Hpy166II	GTNNAC	1 cut(s)	35
Hpy188I	TCNGA	1 cut(s)	318
Hpy8I	GTNNAC	1 cut(s)	35
HpyCH4III	ACNGT	2 cut(s)	86, 303
HpyCH4V	TGCA	2 cut(s)	8, 182
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 169, 188
Hsp92I	GRCGYC	1 cut(s)	170
Hsp92II	CATG	1 cut(s)	130
HspAI	GCGC	2 cut(s)	135, 170
KasI	GGCGCC	1 cut(s)	169
Kzo9I	GATC	1 cut(s)	226
LmnI	GCTCC	1 cut(s)	224
LpnPI	CCDG	7 cut(s)	23, 65, 172, 186, 223, 225, 235
Lsp1109I	GCAGC	1 cut(s)	64
LweI	GCATC	1 cut(s)	309
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	1 cut(s)	228
MboI	GATC	1 cut(s)	226
MboII	GAAGA	2 cut(s)	149, 189
MhlI	GDGCHC	1 cut(s)	193
MluCI	AATT	3 cut(s)	268, 290, 324
Mly113I	GGCGCC	1 cut(s)	170
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	2 cut(s)	206, 266
MspA1I	CMGCKG	1 cut(s)	281
MspI	CCGG	1 cut(s)	210
MwoI	GCNNNNNNNGC	3 cut(s)	143, 169, 188
NarI	GGCGCC	1 cut(s)	170
NdeII	GATC	1 cut(s)	226
NlaIII	CATG	1 cut(s)	130
NlaIV	GGNNCC	2 cut(s)	171, 220
NmeAIII	GCCGAG	1 cut(s)	127
NspV	TTCGAA	1 cut(s)	263
PfeI	GAWTC	1 cut(s)	63
PkrI	GCNGC	1 cut(s)	79
PluTI	GGCGCC	1 cut(s)	173
PspN4I	GGNNCC	2 cut(s)	171, 220
PstNI	CAGNNNCTG	1 cut(s)	239
PvuII	CAGCTG	1 cut(s)	281
SalI	GTCGAC	1 cut(s)	33
SatI	GCNGC	1 cut(s)	78
Sau3AI	GATC	1 cut(s)	226
SduI	GDGCHC	1 cut(s)	193
SetI	ASST	4 cut(s)	92, 217, 241, 283
SfaNI	GCATC	1 cut(s)	309
SfoI	GGCGCC	1 cut(s)	171
SfuI	TTCGAA	1 cut(s)	263
Sse9I	AATT	3 cut(s)	268, 290, 324
SspDI	GGCGCC	1 cut(s)	169
TaaI	ACNGT	2 cut(s)	86, 303
TaqI	TCGA	3 cut(s)	34, 61, 263
TasI	AATT	3 cut(s)	268, 290, 324
TfiI	GAWTC	1 cut(s)	63
TscAI	CASTG	1 cut(s)	229
TseI	GCWGC	1 cut(s)	77
TspDTI	ATGAA	2 cut(s)	166, 238
TspRI	CASTG	1 cut(s)	229
XapI	RAATTY	2 cut(s)	268, 290
XmiI	GTMKAC	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.