pycom15g08770

Bark storage protein A-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000829
Physical Location & Seq
Reverse (-)
5640796 .. 5644176
3381 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g08770.4

Sequence Viewer

Length: 1047 bp
ATGGGAGCTTCGTCAGTAGTAGCTTCTCTGATGATGATCAGCTTCTTCATGCTTAACAGACAACTGCAGGCAGATGCTGCATTGTCGGCAGAGACACACAAGTCGATCGACGAGGCGAACCAGAGTGGCCCTTATCTAGGCTTGGTCATTCCAAACACTTTCGAAATGAACCCGCTTCTTCAATCTCCAAACTTCACCTCAACTAACTTTACTATAGATGTTTCCGGAAGAAGATTTCGGTTCGGAACCATTGCTAACAAGAAAGTCATATTGGTTATGACAGGACTCTCACTGATTAATGCGGGAATTACTACTCAGCTTTTGTTAAGCCTCTTCAACATAGAAGGAGTGGTGCATTATGGCATAGCTGGTAATGCAAACCCATCCATAAACATTGCCGACGTGGTCATTCCTCAGTATTGGGCCCACACTACTCTTTGGAACTGGCAGAGATATGGACAAGGGCCAGAAAACGAGCTACCCCTCGAAGCAAACGGAGACTACACCAGAGAAATTGGCTACTTAAAAGTTGCAAATTATACAGTCAATGCAAGCAGCTCCTCATATGACAACCTGTTAAACAATATTTGGTATCAACCGGAGGAAGTCTTTCCGATAGATGGAACTCCAGAGGAAAGACAACATGCCTTTTGGGTTCCTGTTGATCCCCTTTACTATAACATCTCTCAAAAATTGGAGGACCTGAAATTGGAAGGCTGCCTGAACTCGACGACATGTTTGTCCCATACACCAAAAGTGGCAAGAGTTGATAGGGGAACAAGTGCAAGCATTTATCTAGACAATGCTGCTTACAGAGGCTTCATATACAACAAATTCAACGTCAGCCCTGTGGACATGGAAAGTGCCTCTGTTGCCTTGATATGTCTTCAGCAAGGGGTGCCTTTCATTGCCATCAGGGCTCTCTCCGACTTGGCCGGCGGCGGCTCCGCCAATTCGAATGAGGCCGACACGTTCATAACTCTCGCTTCCAAAAACTCAGTCACTGCTGTTTTGGAATTTGTCAAGCAGTTATCAGCTTCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNP_UDP_1

Protein Analysis

349

Amino Acids

38.14

Weight (kDa)

5.07

Isoelectric Point (pI)

36.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 100, 739
AccB1I GGYRCC 1 cut(s) 898
AccIII TCCGGA 1 cut(s) 224
AciI CCGC 5 cut(s) 173, 302, 939, 942, 948
AclWI GGATC 1 cut(s) 659
AcoI YGGCCR 1 cut(s) 933
AcsI RAATTY 2 cut(s) 833, 1016
AcuI CTGAAG 1 cut(s) 872
AfiI CCNNNNNNNGG 3 cut(s) 137, 620, 709
AflIII ACRYGT 2 cut(s) 734, 969
AgsI TTSAA 4 cut(s) 182, 337, 838, 1041
AjiI CACGTC 1 cut(s) 403
AjuI GAANNNNNNNTTGG 2 cut(s) 254, 286
AluBI AGCT 8 cut(s) 8, 23, 42, 319, 368, 478, 558, 1037
AluI AGCT 8 cut(s) 8, 23, 42, 319, 368, 478, 558, 1037
Alw26I GTCTC 2 cut(s) 86, 492
AlwI GGATC 1 cut(s) 659
AlwNI CAGNNNCTG 2 cut(s) 77, 1004
Aor13HI TCCGGA 1 cut(s) 224
AoxI GGCC 5 cut(s) 127, 423, 464, 933, 963
ApaI GGGCCC 1 cut(s) 427
ApeKI GCWGC 4 cut(s) 77, 555, 717, 806
ApoI RAATTY 2 cut(s) 833, 1016
ArsI GACNNNNNNTTYG 6 cut(s) 721, 753, 825, 857, 984, 1016
AseI ATTAAT 1 cut(s) 297
Asp700I GAANNNNTTC 1 cut(s) 609
AspS9I GGNCC 5 cut(s) 128, 423, 424, 464, 700
AsuHPI GGTGA 1 cut(s) 187
AsuII TTCGAA 2 cut(s) 162, 956
AvaII GGWCC 1 cut(s) 700
BaeGI GKGCMC 1 cut(s) 427
BanI GGYRCC 1 cut(s) 898
BanII GRGCYC 2 cut(s) 427, 922
BbsI GAAGAC 1 cut(s) 878
BbvI GCAGC 4 cut(s) 64, 567, 704, 793
BccI CCATC 3 cut(s) 391, 614, 920
BclI TGATCA 1 cut(s) 36
BcoDI GTCTC 2 cut(s) 86, 492
BfaI CTAG 2 cut(s) 137, 797
BfmI CTRYAG 2 cut(s) 65, 213
BglI GCCNNNNNGGC 1 cut(s) 917
BisI GCNGC 6 cut(s) 78, 556, 718, 807, 940, 943
BlsI GCNGC 6 cut(s) 79, 557, 719, 808, 941, 944
Bme18I GGWCC 1 cut(s) 700
BmgBI CACGTC 1 cut(s) 403
BmgT120I GGNCC 5 cut(s) 128, 423, 424, 464, 700
BmiI GGNNCC 5 cut(s) 247, 425, 657, 900, 946
BmsI GCATC 1 cut(s) 64
BpiI GAAGAC 1 cut(s) 878
BpmI CTGGAG 1 cut(s) 612
Bpu14I TTCGAA 2 cut(s) 162, 956
BsaBI GATNNNNATC 1 cut(s) 35
BsaWI WCCGGW 2 cut(s) 224, 598
Bsc4I CCNNNNNNNGG 3 cut(s) 137, 620, 709
Bse118I RCCGGY 1 cut(s) 935
Bse1I ACTGG 1 cut(s) 449
Bse3DI GCAATG 3 cut(s) 249, 393, 906
Bse8I GATNNNNATC 1 cut(s) 35
BseAI TCCGGA 1 cut(s) 224
BseGI GGATG 1 cut(s) 383
BseJI GATNNNNATC 1 cut(s) 35
BseLI CCNNNNNNNGG 3 cut(s) 137, 620, 709
BseMI GCAATG 3 cut(s) 249, 393, 906
BseMII CTCAG 3 cut(s) 329, 428, 1011
BseNI ACTGG 1 cut(s) 449
BseRI GAGGAG 1 cut(s) 550
BseSI GKGCMC 1 cut(s) 427
BseXI GCAGC 4 cut(s) 64, 567, 704, 793
Bsh1285I CGRYCG 1 cut(s) 108
BshFI GGCC 5 cut(s) 129, 425, 466, 935, 965
BshNI GGYRCC 1 cut(s) 898
BsiEI CGRYCG 1 cut(s) 108
BsiSI CCGG 3 cut(s) 225, 599, 936
BslFI GGGAC 1 cut(s) 727
BslI CCNNNNNNNGG 3 cut(s) 137, 620, 709
BsmAI GTCTC 2 cut(s) 86, 492
BsmFI GGGAC 1 cut(s) 727
BsnI GGCC 5 cut(s) 129, 425, 466, 935, 965
Bsp119I TTCGAA 2 cut(s) 162, 956
Bsp120I GGGCCC 1 cut(s) 423
Bsp1286I GDGCHC 2 cut(s) 427, 922
Bsp13I TCCGGA 1 cut(s) 224
Bsp143I GATC 3 cut(s) 36, 105, 664
BspACI CCGC 5 cut(s) 173, 302, 939, 942, 948
BspANI GGCC 5 cut(s) 129, 425, 466, 935, 965
BspCNI CTCAG 3 cut(s) 328, 427, 1010
BspEI TCCGGA 1 cut(s) 224
BspLI GGNNCC 5 cut(s) 247, 425, 657, 900, 946
BspMAI CTGCAG 1 cut(s) 69
BspPI GGATC 1 cut(s) 659
BspT104I TTCGAA 2 cut(s) 162, 956
BspT107I GGYRCC 1 cut(s) 898
BsrDI GCAATG 3 cut(s) 249, 393, 906
BsrFI RCCGGY 1 cut(s) 935
BsrI ACTGG 1 cut(s) 449
BssAI RCCGGY 1 cut(s) 935
BssMI GATC 3 cut(s) 36, 105, 664
Bst4CI ACNGT 1 cut(s) 544
Bst6I CTCTTC 1 cut(s) 338
BstAPI GCANNNNNTGC 2 cut(s) 77, 898
BstBI TTCGAA 2 cut(s) 162, 956
BstC8I GCNNGC 4 cut(s) 69, 553, 787, 937
BstDEI CTNAG 3 cut(s) 315, 414, 997
BstENI CCTNNNNNAGG 1 cut(s) 135
BstF5I GGATG 1 cut(s) 383
BstKTI GATC 3 cut(s) 39, 108, 667
BstMAI GTCTC 2 cut(s) 86, 492
BstMBI GATC 3 cut(s) 36, 105, 664
BstMCI CGRYCG 1 cut(s) 108
BstMWI GCNNNNNNNGC 6 cut(s) 77, 86, 374, 872, 898, 917
BstNSI RCATGY 2 cut(s) 647, 738
BstSFI CTRYAG 2 cut(s) 65, 213
BstSLI GKGCMC 1 cut(s) 427
BstV1I GCAGC 4 cut(s) 64, 567, 704, 793
BstV2I GAAGAC 1 cut(s) 878
BsuRI GGCC 5 cut(s) 129, 425, 466, 935, 965
BtrI CACGTC 1 cut(s) 403
BtsCI GGATG 1 cut(s) 383
BtsI GCAGTG 1 cut(s) 1002
BtsIMutI CAGTG 2 cut(s) 290, 1002
Cac8I GCNNGC 4 cut(s) 69, 553, 787, 937
CaiI CAGNNNCTG 2 cut(s) 77, 1004
Cfr10I RCCGGY 1 cut(s) 935
Cfr13I GGNCC 5 cut(s) 128, 423, 424, 464, 700
CviAII CATG 4 cut(s) 49, 644, 735, 856
DdeI CTNAG 3 cut(s) 315, 414, 997
DpnI GATC 3 cut(s) 38, 107, 666
DpnII GATC 3 cut(s) 36, 105, 664
DrdI GACNNNNNNGTC 2 cut(s) 100, 739
DseDI GACNNNNNNGTC 2 cut(s) 100, 739
EaeI YGGCCR 1 cut(s) 933
Eam1104I CTCTTC 1 cut(s) 338
EarI CTCTTC 1 cut(s) 338
EciI GGCGGA 1 cut(s) 937
Eco24I GRGCYC 2 cut(s) 427, 922
Eco47I GGWCC 1 cut(s) 700
Eco57I CTGAAG 1 cut(s) 872
EcoNI CCTNNNNNAGG 1 cut(s) 135
EcoO109I RGGNCCY 1 cut(s) 700
EcoT38I GRGCYC 2 cut(s) 427, 922
FaeI CATG 4 cut(s) 52, 647, 738, 859
FaqI GGGAC 1 cut(s) 727
FatI CATG 4 cut(s) 48, 643, 734, 855
FauI CCCGC 2 cut(s) 180, 295
FauNDI CATATG 1 cut(s) 565
FbaI TGATCA 1 cut(s) 36
Fnu4HI GCNGC 6 cut(s) 78, 556, 718, 807, 940, 943
FokI GGATG 1 cut(s) 370
FriOI GRGCYC 2 cut(s) 427, 922
Fsp4HI GCNGC 6 cut(s) 78, 556, 718, 807, 940, 943
FspBI CTAG 2 cut(s) 137, 797
GluI GCNGC 6 cut(s) 78, 556, 718, 807, 940, 943
GsuI CTGGAG 1 cut(s) 612
HaeIII GGCC 5 cut(s) 129, 425, 466, 935, 965
HapII CCGG 3 cut(s) 225, 599, 936
Hin1II CATG 4 cut(s) 52, 647, 738, 859
HinfI GANTC 1 cut(s) 285
HpaII CCGG 3 cut(s) 225, 599, 936
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 1 cut(s) 853
Hpy188I TCNGA 4 cut(s) 30, 245, 615, 928
Hpy188III TCNNGA 3 cut(s) 225, 629, 797
Hpy8I GTNNAC 1 cut(s) 853
Hpy99I CGWCG 3 cut(s) 113, 404, 733
HpyAV CCTTC 2 cut(s) 338, 707
HpyCH4III ACNGT 1 cut(s) 544
HpyCH4IV ACGT 3 cut(s) 402, 840, 971
HpyCH4V TGCA 7 cut(s) 67, 80, 355, 377, 533, 551, 785
HpyF10VI GCNNNNNNNGC 6 cut(s) 77, 86, 374, 872, 898, 917
HpyF3I CTNAG 3 cut(s) 315, 414, 997
HpySE526I ACGT 3 cut(s) 402, 840, 971
Hsp92II CATG 4 cut(s) 52, 647, 738, 859
Kpn2I TCCGGA 1 cut(s) 224
KroI GCCGGC 1 cut(s) 935
KroNI GCCGGC 1 cut(s) 937
Ksp22I TGATCA 1 cut(s) 36
Kzo9I GATC 3 cut(s) 36, 105, 664
LmnI GCTCC 3 cut(s) 5, 563, 950
Lsp1109I GCAGC 4 cut(s) 64, 567, 704, 793
LweI GCATC 1 cut(s) 64
MaeI CTAG 2 cut(s) 137, 797
MaeII ACGT 3 cut(s) 402, 840, 971
MaeIII GTNAC 1 cut(s) 1000
MalI GATC 3 cut(s) 38, 107, 666
MboI GATC 3 cut(s) 36, 105, 664
MboII GAAGA 6 cut(s) 37, 170, 240, 243, 325, 878
MhlI GDGCHC 2 cut(s) 427, 922
MluCI AATT 8 cut(s) 306, 513, 535, 692, 707, 833, 952, 1016
MlyI GAGTC 1 cut(s) 279
MmeI TCCRAC 1 cut(s) 951
MroI TCCGGA 1 cut(s) 224
MroNI GCCGGC 1 cut(s) 935
MroXI GAANNNNTTC 1 cut(s) 609
MseI TTAA 5 cut(s) 54, 297, 326, 524, 578
MspI CCGG 3 cut(s) 225, 599, 936
MwoI GCNNNNNNNGC 6 cut(s) 77, 86, 374, 872, 898, 917
NaeI GCCGGC 1 cut(s) 937
NdeI CATATG 1 cut(s) 565
NdeII GATC 3 cut(s) 36, 105, 664
NgoMIV GCCGGC 1 cut(s) 935
NlaIII CATG 4 cut(s) 52, 647, 738, 859
NlaIV GGNNCC 5 cut(s) 247, 425, 657, 900, 946
NmuCI GTSAC 1 cut(s) 1000
NspI RCATGY 2 cut(s) 647, 738
NspV TTCGAA 2 cut(s) 162, 956
PciI ACATGT 1 cut(s) 734
PdiI GCCGGC 1 cut(s) 937
PdmI GAANNNNTTC 1 cut(s) 609
PflFI GACNNNGTC 1 cut(s) 404
PkrI GCNGC 6 cut(s) 79, 557, 719, 808, 941, 944
Ple19I CGATCG 1 cut(s) 108
PleI GAGTC 1 cut(s) 279
PpsI GAGTC 1 cut(s) 279
PpuMI RGGWCCY 1 cut(s) 700
PscI ACATGT 1 cut(s) 734
PshBI ATTAAT 1 cut(s) 297
Psp5II RGGWCCY 1 cut(s) 700
PspN4I GGNNCC 5 cut(s) 247, 425, 657, 900, 946
PspOMI GGGCCC 1 cut(s) 423
PspPI GGNCC 5 cut(s) 128, 423, 424, 464, 700
PspPPI RGGWCCY 1 cut(s) 700
PstI CTGCAG 1 cut(s) 69
PstNI CAGNNNCTG 2 cut(s) 77, 1004
PsyI GACNNNGTC 1 cut(s) 404
PvuI CGATCG 1 cut(s) 108
SaqAI TTAA 5 cut(s) 54, 297, 326, 524, 578
SatI GCNGC 6 cut(s) 78, 556, 718, 807, 940, 943
Sau3AI GATC 3 cut(s) 36, 105, 664
Sau96I GGNCC 5 cut(s) 128, 423, 424, 464, 700
SchI GAGTC 1 cut(s) 279
SduI GDGCHC 2 cut(s) 427, 922
SfaNI GCATC 1 cut(s) 64
SfcI CTRYAG 2 cut(s) 65, 213
SfuI TTCGAA 2 cut(s) 162, 956
SinI GGWCC 1 cut(s) 700
Sse9I AATT 8 cut(s) 306, 513, 535, 692, 707, 833, 952, 1016
SsiI CCGC 5 cut(s) 173, 302, 939, 942, 948
SspI AATATT 1 cut(s) 586
SspMI CTAG 2 cut(s) 137, 797
TaaI ACNGT 1 cut(s) 544
TaiI ACGT 3 cut(s) 405, 843, 974
TaqI TCGA 6 cut(s) 104, 108, 162, 486, 728, 956
TasI AATT 8 cut(s) 306, 513, 535, 692, 707, 833, 952, 1016
TauI GCSGC 2 cut(s) 942, 945
Tru1I TTAA 5 cut(s) 54, 297, 326, 524, 578
Tru9I TTAA 5 cut(s) 54, 297, 326, 524, 578
TscAI CASTG 2 cut(s) 297, 1009
TseFI GTSAC 1 cut(s) 1000
TseI GCWGC 4 cut(s) 77, 555, 717, 806
Tsp45I GTSAC 1 cut(s) 1000
TspDTI ATGAA 5 cut(s) 37, 182, 811, 895, 964
TspGWI ACGGA 1 cut(s) 510
TspRI CASTG 2 cut(s) 297, 1009
Tth111I GACNNNGTC 1 cut(s) 404
VpaK11BI GGWCC 1 cut(s) 700
VspI ATTAAT 1 cut(s) 297
XagI CCTNNNNNAGG 1 cut(s) 135
XapI RAATTY 2 cut(s) 833, 1016
XbaI TCTAGA 1 cut(s) 796
XceI RCATGY 2 cut(s) 647, 738
XmnI GAANNNNTTC 1 cut(s) 609
XspI CTAG 2 cut(s) 137, 797
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.