Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000829

Physical Location & Seq

Genomic Coordinates Forward (+)

62911049 .. 62912649

Gene Structure 1601 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG459100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGAGAATTTCAGTAGTAGCTTGGCCTTGCATAGCTGTTTACGCTGTGATCATCAGCTTGATGCTTAAACACACAAATGATGCATTGTCTACAGATACACAGAAGTTGATCGACCAGGCCAACAAGAGTGGCCCTTACTTGGGCTTGGTAATTCTGAATTCTTTCGAACTGGACCCTCTTCTTCAATCTCCAAACTTCACTTCAACAAACTTGATCATAGATTTTTCCGGAAGGAGATTTCGGTTTGGAACCATTGCTGAAAAGAAAGTCATCTTAGTCATGACAGGAGTTTCCTGTCCATGTATTAGTCCCATAGAGCTCTTTGGAATTGACAGAGATATGGAAACGGGCCTCAAGATGAACTACTCCTTGAATCACAAGGAGACTACACGAGAAATTGGCTACTTCAAATTTTCAAATTATACAGTGAATGTGACAGGTGGCAGCTCATTTGATAATCTCTTAAACAACATTTGGTATCAACCTGAAGAAGTCTTCCCTATTGATGGAACTCCAGAACAAAGACAGCATGCCTTCTGGGTTGCTGTTGATCCCTTCTACTATGAAATCTCCAAAAAGCTTGAGGATTTGAAGCTTGAGAGTTGCCTAAACTCAACAACATGTTTGCCCCATACCCCAAAGGTGGCTTTAGTCGAAAGGGGAACAAGTGCCAGCATTTTCCTGTCTAATGCTGCTTACCGTAGCTTCTTATATGACAAGTTCAACATAAGCCCTTTGGACATGGAAAGCGCTTCTGTTGCCTTGATATGTCTTCAGCAAAGGGTGCCTTTCATTGCAATCAGGGCTCTCTCTTCTGGTCTAACTGGTGGTGGCTCCGATGATCACACTGAAGCTGGCAAGTTCATTAGCCTTGCTTCGAAAAATTCAGTTACAGCTGTTGTGGAATTTATCAAACAGCTATCACTTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNP_UDP_1

Protein Analysis

310

Amino Acids

34.49

Weight (kDa)

5.78

Isoelectric Point (pI)

38.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PNP_UDP_1	PF01048	222 - 305	4.9e-09	Phosphorylase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28940 AT4G28940
fragaria_vesca	FvH4_1g05530 FvH4_2g35741 FvH4_2g35750 FvH4_2g35760 FvH4_2g35761 FvH4_2g35762
malus_domestica	MD15G1095100.v1.1 MD15G1095200.v1.1 MD15G1095300.v1.1 MD15G1191300.v1.1
prunus_persica	Prupe.1G450100_v2.0.a1 Prupe.1G450200_v2.0.a1 Prupe.7G225900_v2.0.a1 Prupe.7G225900_v2.0.a1 Prupe.7G225900_v2.0.a1
pyrus_communis	pycom15g08760 pycom15g08770 pycom15g17130
rosa_chinensis	RchiOBHm_Chr1g0336711 RchiOBHm_Chr2g0091231 RchiOBHm_Chr6g0259261 RchiOBHm_Chr6g0259271 RchiOBHm_Chr6g0306011 RchiOBHm_Chr6g0306021
rosa_laevigata	RLG00000010830 RLG00000010831 RLG00000010832 RLG00000014544 RLG00000016193 RLG00000029340
rosa_multiflora	Rmu_sc0002270.1_g000016 Rmu_sc0011974.1_g000004 Rmu_sc0020534.1_g000001 Rmu_sc0035114.1_g000001 Rmu_sc0036553.1_g000001 Rmu_ssc0000050.1_g000090
rosa_roxburghii	Rroxscaffold_2G00150370 Rroxscaffold_7G00162110 Rroxscaffold_7G00162130
rosa_rugosa	Rorug02G0014600 Rorug06G0346400 Rorug06G0346600
rosa_samantha	Rh2AG060400 Rh2BG059100 Rh2CG060900 Rh2DG059700 Rh6AG103200 Rh6AG458200 Rh6AG458400 Rh6BG095600 Rh6BG442400 Rh6BG442500 Rh6BG442600 Rh6BG442700 Rh6CG092500 Rh6CG472700 Rh6CG472800 Rh6CG472900 Rh6DG086500 Rh6DG458800 Rh6DG459000 Rh6DG459100
rosa_wichuraiana	Rw2G004950 Rw6G008910 Rw6G039960 Rw6G039970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	784
AccI	GTMKAC	1 cut(s)	89
AccIII	TCCGGA	1 cut(s)	227
AclWI	GGATC	1 cut(s)	545
AcsI	RAATTY	5 cut(s)	6, 157, 410, 883, 905
AcuI	CTGAAG	3 cut(s)	507, 758, 870
AfeI	AGCGCT	1 cut(s)	751
AfiI	CCNNNNNNNGG	4 cut(s)	139, 140, 506, 643
AflIII	ACRYGT	1 cut(s)	620
AgsI	TTSAA	7 cut(s)	185, 204, 373, 409, 417, 592, 724
AjnI	CCWGG	1 cut(s)	114
AjuI	GAANNNNNNNTTGG	2 cut(s)	184, 216
Alw21I	GWGCWC	1 cut(s)	321
Alw26I	GTCTC	1 cut(s)	377
AlwI	GGATC	1 cut(s)	545
Aor13HI	TCCGGA	1 cut(s)	227
Aor51HI	AGCGCT	1 cut(s)	751
AoxI	GGCC	4 cut(s)	23, 117, 130, 349
ApeKI	GCWGC	2 cut(s)	444, 692
ApoI	RAATTY	5 cut(s)	6, 157, 410, 883, 905
Asp700I	GAANNNNTTC	1 cut(s)	161
AspLEI	GCGC	1 cut(s)	752
AspS9I	GGNCC	3 cut(s)	131, 172, 349
AsuII	TTCGAA	2 cut(s)	165, 878
AvaII	GGWCC	1 cut(s)	172
BanI	GGYRCC	1 cut(s)	784
BanII	GRGCYC	2 cut(s)	321, 808
BauI	CACGAG	1 cut(s)	390
BbsI	GAAGAC	2 cut(s)	487, 764
Bbv12I	GWGCWC	1 cut(s)	321
BbvI	GCAGC	2 cut(s)	456, 679
BccI	CCATC	1 cut(s)	500
BciT130I	CCWGG	1 cut(s)	116
BclI	TGATCA	3 cut(s)	48, 213, 841
BcoDI	GTCTC	1 cut(s)	377
BfmI	CTRYAG	1 cut(s)	90
BfoI	RGCGCY	1 cut(s)	753
BisI	GCNGC	2 cut(s)	445, 693
BlsI	GCNGC	2 cut(s)	446, 694
Bme1390I	CCNGG	1 cut(s)	116
Bme18I	GGWCC	1 cut(s)	172
BmgT120I	GGNCC	3 cut(s)	131, 172, 349
BmiI	GGNNCC	4 cut(s)	174, 250, 786, 835
BmrFI	CCNGG	1 cut(s)	116
BmsI	GCATC	2 cut(s)	51, 70
BpiI	GAAGAC	2 cut(s)	487, 764
BpmI	CTGGAG	1 cut(s)	498
Bpu14I	TTCGAA	2 cut(s)	165, 878
BpuEI	CTTGAG	3 cut(s)	338, 602, 617
BsaWI	WCCGGW	1 cut(s)	227
Bsc4I	CCNNNNNNNGG	4 cut(s)	139, 140, 506, 643
Bse1I	ACTGG	2 cut(s)	174, 829
Bse3DI	GCAATG	2 cut(s)	252, 792
BseAI	TCCGGA	1 cut(s)	227
BseBI	CCWGG	1 cut(s)	116
BseLI	CCNNNNNNNGG	4 cut(s)	139, 140, 506, 643
BseMI	GCAATG	2 cut(s)	252, 792
BseNI	ACTGG	2 cut(s)	174, 829
BseXI	GCAGC	2 cut(s)	456, 679
BshFI	GGCC	4 cut(s)	25, 119, 132, 351
BshNI	GGYRCC	1 cut(s)	784
BsiHKAI	GWGCWC	1 cut(s)	321
BsiSI	CCGG	1 cut(s)	228
BslFI	GGGAC	1 cut(s)	294
BslI	CCNNNNNNNGG	4 cut(s)	139, 140, 506, 643
BsmAI	GTCTC	1 cut(s)	377
BsmFI	GGGAC	1 cut(s)	294
BsnI	GGCC	4 cut(s)	25, 119, 132, 351
Bsp119I	TTCGAA	2 cut(s)	165, 878
Bsp1286I	GDGCHC	2 cut(s)	321, 808
Bsp13I	TCCGGA	1 cut(s)	227
Bsp143I	GATC	5 cut(s)	48, 108, 213, 550, 841
BspANI	GGCC	4 cut(s)	25, 119, 132, 351
BspEI	TCCGGA	1 cut(s)	227
BspHI	TCATGA	1 cut(s)	279
BspLI	GGNNCC	4 cut(s)	174, 250, 786, 835
BspPI	GGATC	1 cut(s)	545
BspT104I	TTCGAA	2 cut(s)	165, 878
BspT107I	GGYRCC	1 cut(s)	784
BsrDI	GCAATG	2 cut(s)	252, 792
BsrI	ACTGG	2 cut(s)	174, 829
BssMI	GATC	5 cut(s)	48, 108, 213, 550, 841
BssSI	CACGAG	1 cut(s)	390
Bst2BI	CACGAG	1 cut(s)	390
Bst2UI	CCWGG	1 cut(s)	116
Bst4CI	ACNGT	2 cut(s)	427, 701
Bst6I	CTCTTC	2 cut(s)	183, 817
BstAPI	GCANNNNNTGC	1 cut(s)	784
BstBI	TTCGAA	2 cut(s)	165, 878
BstC8I	GCNNGC	3 cut(s)	531, 673, 856
BstDEI	CTNAG	1 cut(s)	274
BstH2I	RGCGCY	1 cut(s)	753
BstHHI	GCGC	1 cut(s)	752
BstKTI	GATC	5 cut(s)	51, 111, 216, 553, 844
BstMAI	GTCTC	1 cut(s)	377
BstMBI	GATC	5 cut(s)	48, 108, 213, 550, 841
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 758, 784, 803
BstNI	CCWGG	1 cut(s)	116
BstNSI	RCATGY	2 cut(s)	533, 624
BstSCI	CCNGG	1 cut(s)	114
BstSFI	CTRYAG	1 cut(s)	90
BstV1I	GCAGC	2 cut(s)	456, 679
BstV2I	GAAGAC	2 cut(s)	487, 764
BsuRI	GGCC	4 cut(s)	25, 119, 132, 351
BtsIMutI	CAGTG	2 cut(s)	432, 846
Cac8I	GCNNGC	3 cut(s)	531, 673, 856
CciI	TCATGA	1 cut(s)	279
CfoI	GCGC	1 cut(s)	752
Cfr13I	GGNCC	3 cut(s)	131, 172, 349
CspCI	CAANNNNNGTGG	2 cut(s)	109, 144
CviAII	CATG	5 cut(s)	280, 300, 530, 621, 742
DdeI	CTNAG	1 cut(s)	274
DpnI	GATC	5 cut(s)	50, 110, 215, 552, 843
DpnII	GATC	5 cut(s)	48, 108, 213, 550, 841
Eam1104I	CTCTTC	2 cut(s)	183, 817
EarI	CTCTTC	2 cut(s)	183, 817
Ecl136II	GAGCTC	1 cut(s)	319
Eco24I	GRGCYC	2 cut(s)	321, 808
Eco47I	GGWCC	1 cut(s)	172
Eco47III	AGCGCT	1 cut(s)	751
Eco53kI	GAGCTC	1 cut(s)	319
Eco57I	CTGAAG	3 cut(s)	507, 758, 870
EcoICRI	GAGCTC	1 cut(s)	319
EcoRI	GAATTC	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	114
EcoT22I	ATGCAT	1 cut(s)	85
EcoT38I	GRGCYC	2 cut(s)	321, 808
FaeI	CATG	5 cut(s)	283, 303, 533, 624, 745
FalI	AAGNNNNNCTT	2 cut(s)	772, 804
FaqI	GGGAC	1 cut(s)	294
FatI	CATG	5 cut(s)	279, 299, 529, 620, 741
FbaI	TGATCA	3 cut(s)	48, 213, 841
FblI	GTMKAC	1 cut(s)	89
Fnu4HI	GCNGC	2 cut(s)	445, 693
FriOI	GRGCYC	2 cut(s)	321, 808
Fsp4HI	GCNGC	2 cut(s)	445, 693
GlaI	GCGC	1 cut(s)	751
GluI	GCNGC	2 cut(s)	445, 693
GsuI	CTGGAG	1 cut(s)	498
HaeII	RGCGCY	1 cut(s)	753
HaeIII	GGCC	4 cut(s)	25, 119, 132, 351
HapII	CCGG	1 cut(s)	228
HhaI	GCGC	1 cut(s)	752
Hin1II	CATG	5 cut(s)	283, 303, 533, 624, 745
Hin6I	GCGC	1 cut(s)	750
HinP1I	GCGC	1 cut(s)	750
HindIII	AAGCTT	2 cut(s)	578, 593
HinfI	GANTC	1 cut(s)	373
HpaII	CCGG	1 cut(s)	228
Hpy166II	GTNNAC	2 cut(s)	40, 90
Hpy188I	TCNGA	2 cut(s)	156, 838
Hpy188III	TCNNGA	4 cut(s)	228, 280, 355, 515
Hpy8I	GTNNAC	2 cut(s)	40, 90
HpyAV	CCTTC	3 cut(s)	225, 544, 565
HpyCH4III	ACNGT	2 cut(s)	427, 701
HpyCH4V	TGCA	3 cut(s)	30, 83, 797
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 758, 784, 803
HpyF3I	CTNAG	1 cut(s)	274
Hsp92II	CATG	5 cut(s)	283, 303, 533, 624, 745
HspAI	GCGC	1 cut(s)	750
Kpn2I	TCCGGA	1 cut(s)	227
Ksp22I	TGATCA	3 cut(s)	48, 213, 841
Kzo9I	GATC	5 cut(s)	48, 108, 213, 550, 841
LmnI	GCTCC	1 cut(s)	839
Lsp1109I	GCAGC	2 cut(s)	456, 679
LweI	GCATC	2 cut(s)	51, 70
MaeIII	GTNAC	2 cut(s)	433, 889
MalI	GATC	5 cut(s)	50, 110, 215, 552, 843
MboI	GATC	5 cut(s)	48, 108, 213, 550, 841
MboII	GAAGA	6 cut(s)	170, 173, 487, 500, 764, 804
MhlI	GDGCHC	2 cut(s)	321, 808
MluCI	AATT	9 cut(s)	6, 150, 157, 327, 396, 410, 418, 883, 905
MnlI	CCTC	3 cut(s)	186, 362, 577
Mph1103I	ATGCAT	1 cut(s)	85
MroI	TCCGGA	1 cut(s)	227
MroXI	GAANNNNTTC	1 cut(s)	161
MseI	TTAA	2 cut(s)	66, 464
MslI	CAYNNNNRTG	1 cut(s)	75
MspA1I	CMGCKG	1 cut(s)	896
MspI	CCGG	1 cut(s)	228
MspR9I	CCNGG	1 cut(s)	116
MvaI	CCWGG	1 cut(s)	116
MwoI	GCNNNNNNNGC	4 cut(s)	41, 758, 784, 803
NdeII	GATC	5 cut(s)	48, 108, 213, 550, 841
NlaIII	CATG	5 cut(s)	283, 303, 533, 624, 745
NlaIV	GGNNCC	4 cut(s)	174, 250, 786, 835
NmuCI	GTSAC	1 cut(s)	433
NsiI	ATGCAT	1 cut(s)	85
NspI	RCATGY	2 cut(s)	533, 624
NspV	TTCGAA	2 cut(s)	165, 878
PaeI	GCATGC	1 cut(s)	533
PagI	TCATGA	1 cut(s)	279
PciI	ACATGT	1 cut(s)	620
PdmI	GAANNNNTTC	1 cut(s)	161
PfeI	GAWTC	1 cut(s)	373
PkrI	GCNGC	2 cut(s)	446, 694
PscI	ACATGT	1 cut(s)	620
Psp124BI	GAGCTC	1 cut(s)	321
Psp6I	CCWGG	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	4 cut(s)	174, 250, 786, 835
PspPI	GGNCC	3 cut(s)	131, 172, 349
PvuII	CAGCTG	1 cut(s)	896
RseI	CAYNNNNRTG	1 cut(s)	75
SacI	GAGCTC	1 cut(s)	321
SaqAI	TTAA	2 cut(s)	66, 464
SatI	GCNGC	2 cut(s)	445, 693
Sau3AI	GATC	5 cut(s)	48, 108, 213, 550, 841
Sau96I	GGNCC	3 cut(s)	131, 172, 349
ScrFI	CCNGG	1 cut(s)	116
SduI	GDGCHC	2 cut(s)	321, 808
SfaNI	GCATC	2 cut(s)	51, 70
SfcI	CTRYAG	1 cut(s)	90
SfuI	TTCGAA	2 cut(s)	165, 878
SinI	GGWCC	1 cut(s)	172
SmiMI	CAYNNNNRTG	1 cut(s)	75
SmlI	CTYRAG	3 cut(s)	353, 581, 596
SmoI	CTYRAG	3 cut(s)	353, 581, 596
SphI	GCATGC	1 cut(s)	533
Sse9I	AATT	9 cut(s)	6, 150, 157, 327, 396, 410, 418, 883, 905
SstI	GAGCTC	1 cut(s)	321
StyD4I	CCNGG	1 cut(s)	114
TaaI	ACNGT	2 cut(s)	427, 701
TaqI	TCGA	4 cut(s)	111, 165, 654, 878
TasI	AATT	9 cut(s)	6, 150, 157, 327, 396, 410, 418, 883, 905
TfiI	GAWTC	1 cut(s)	373
Tru1I	TTAA	2 cut(s)	66, 464
Tru9I	TTAA	2 cut(s)	66, 464
TscAI	CASTG	2 cut(s)	432, 853
TseFI	GTSAC	1 cut(s)	433
TseI	GCWGC	2 cut(s)	444, 692
Tsp45I	GTSAC	1 cut(s)	433
TspDTI	ATGAA	4 cut(s)	374, 579, 781, 853
TspRI	CASTG	2 cut(s)	432, 853
VpaK11BI	GGWCC	1 cut(s)	172
XapI	RAATTY	5 cut(s)	6, 157, 410, 883, 905
XceI	RCATGY	2 cut(s)	533, 624
XmiI	GTMKAC	1 cut(s)	89
XmnI	GAANNNNTTC	1 cut(s)	161
Zsp2I	ATGCAT	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.