RchiOBHm_Chr6g0259261

Bark storage protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000829
Physical Location & Seq
Reverse (-)
14527994 .. 14528179
186 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23245

Sequence Viewer

Length: 186 bp
ATGGAAAGTGCTGCAGTAGCTCTGGTCTGTAAGCAGCAGAAGACATCCTTCATTGTGATTAGGGCGCTATCAGATTTGGCCGGGGGAGGTTCCTCTGTGTCGAATGAAGCCTCTACTTTCGCATCATTGGCAGCTCAAATTGCAGTCATTGTCGTGCTCAAATTCATTTCCTTGTTGTCTTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNP_UDP_1

Protein Analysis

61

Amino Acids

6.2

Weight (kDa)

7.93

Isoelectric Point (pI)

28.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNP_UDP_1 PF01048 1 - 56 4.6e-07 Phosphorylase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 78
AcsI RAATTY 1 cut(s) 161
AluBI AGCT 2 cut(s) 20, 134
AluI AGCT 2 cut(s) 20, 134
Alw21I GWGCWC 1 cut(s) 159
AoxI GGCC 1 cut(s) 78
ApeKI GCWGC 3 cut(s) 11, 34, 131
ApoI RAATTY 1 cut(s) 161
AspLEI GCGC 1 cut(s) 67
AsuC2I CCSGG 1 cut(s) 82
BbsI GAAGAC 2 cut(s) 47, 171
Bbv12I GWGCWC 1 cut(s) 159
BbvI GCAGC 2 cut(s) 46, 143
BcnI CCSGG 1 cut(s) 82
BfmI CTRYAG 1 cut(s) 12
BfoI RGCGCY 1 cut(s) 68
BisI GCNGC 3 cut(s) 12, 35, 132
BlsI GCNGC 3 cut(s) 13, 36, 133
Bme1390I CCNGG 1 cut(s) 82
BmiI GGNNCC 1 cut(s) 91
BmrFI CCNGG 1 cut(s) 82
BmsI GCATC 1 cut(s) 131
BpiI GAAGAC 2 cut(s) 47, 171
BpuMI CCSGG 1 cut(s) 82
BsaJI CCNNGG 1 cut(s) 81
BseDI CCNNGG 1 cut(s) 81
BseGI GGATG 1 cut(s) 44
BseXI GCAGC 2 cut(s) 46, 143
BshFI GGCC 1 cut(s) 80
BsiHKAI GWGCWC 1 cut(s) 159
BsiSI CCGG 1 cut(s) 81
BsnI GGCC 1 cut(s) 80
Bsp1286I GDGCHC 1 cut(s) 159
BspANI GGCC 1 cut(s) 80
BspLI GGNNCC 1 cut(s) 91
BspMAI CTGCAG 1 cut(s) 16
BssECI CCNNGG 1 cut(s) 81
BstF5I GGATG 1 cut(s) 44
BstH2I RGCGCY 1 cut(s) 68
BstHHI GCGC 1 cut(s) 67
BstMWI GCNNNNNNNGC 3 cut(s) 17, 128, 140
BstSCI CCNGG 1 cut(s) 80
BstSFI CTRYAG 1 cut(s) 12
BstV1I GCAGC 2 cut(s) 46, 143
BstV2I GAAGAC 2 cut(s) 47, 171
BsuRI GGCC 1 cut(s) 80
BtsCI GGATG 1 cut(s) 44
CfoI GCGC 1 cut(s) 67
CviJI RGCY 4 cut(s) 20, 80, 110, 134
CviKI_1 RGCY 4 cut(s) 20, 80, 110, 134
EaeI YGGCCR 1 cut(s) 78
FalI AAGNNNNNCTT 2 cut(s) 32, 64
Fnu4HI GCNGC 3 cut(s) 12, 35, 132
FokI GGATG 1 cut(s) 31
Fsp4HI GCNGC 3 cut(s) 12, 35, 132
GlaI GCGC 1 cut(s) 66
GluI GCNGC 3 cut(s) 12, 35, 132
HaeII RGCGCY 1 cut(s) 68
HaeIII GGCC 1 cut(s) 80
HapII CCGG 1 cut(s) 81
HhaI GCGC 1 cut(s) 67
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HpaII CCGG 1 cut(s) 81
Hpy188I TCNGA 1 cut(s) 73
HpyAV CCTTC 1 cut(s) 58
HpyCH4V TGCA 2 cut(s) 14, 143
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 128, 140
HspAI GCGC 1 cut(s) 65
LpnPI CCDG 2 cut(s) 8, 94
Lsp1109I GCAGC 2 cut(s) 46, 143
LweI GCATC 1 cut(s) 131
MboII GAAGA 2 cut(s) 52, 171
MhlI GDGCHC 1 cut(s) 159
MluCI AATT 2 cut(s) 138, 161
MnlI CCTC 3 cut(s) 80, 103, 121
MslI CAYNNNNRTG 1 cut(s) 152
MspI CCGG 1 cut(s) 81
MspR9I CCNGG 1 cut(s) 82
MwoI GCNNNNNNNGC 3 cut(s) 17, 128, 140
NciI CCSGG 1 cut(s) 82
NlaIV GGNNCC 1 cut(s) 91
PkrI GCNGC 3 cut(s) 13, 36, 133
PspN4I GGNNCC 1 cut(s) 91
PstI CTGCAG 1 cut(s) 16
RseI CAYNNNNRTG 1 cut(s) 152
SatI GCNGC 3 cut(s) 12, 35, 132
ScrFI CCNGG 1 cut(s) 82
SduI GDGCHC 1 cut(s) 159
SetI ASST 3 cut(s) 22, 91, 136
SfaNI GCATC 1 cut(s) 131
SfcI CTRYAG 1 cut(s) 12
SgeI CNNG 4 cut(s) 35, 93, 94, 166
SmiMI CAYNNNNRTG 1 cut(s) 152
Sse9I AATT 2 cut(s) 138, 161
StyD4I CCNGG 1 cut(s) 80
TaqI TCGA 1 cut(s) 101
TasI AATT 2 cut(s) 138, 161
TseI GCWGC 3 cut(s) 11, 34, 131
TspDTI ATGAA 3 cut(s) 40, 120, 154
XapI RAATTY 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.