Rh6CG472900
ERF Family

Phosphorylase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000829
Physical Location & Seq
Forward (+)
64262484 .. 64267108
4625 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG472900.1

Sequence Viewer

Length: 1632 bp
ATGGGAAGTTCATCAGTAGTAGGTTGGACTCTTCTTTATGCTATCTTGGCTCTTATCACAACCCAACAGCACTACTCAAATGCTGCCTTGTTGCCGGAGACACTCAAGTTGATCGAAGCGGCCAACGCCGATGGACCTTATTTAGGGTTGGTCATTCCAAACACTTACGAATTGAACCCTCTTCTTCGATCTCCAAACTTCACCTCAACTGACTTGATCATTGACTTTTCTGGAAGAAGATTCAGGTTTGGAACCATTGCTACAAAGAAAGTCATATTGGTTATGACAGGACTGGGAATGATTAATGCAGGAATAACCACTCAGCTTTTACTAAGCATGTTCAGTGTAGAAGGAGTGGTACATTATGGCACAGCTGGCAATGCGAATCCAACCTTCAACCTTGCAGATGTGGTCATTCCTCAGTATTGGTCCCATACTGCTCTTTGGACCTGGCAAAGATATGGACATGGGCCTGAAGATGATTTGCCTCTAAATTCGATGAGAGATATTGGGTGCTTGAACCTTGCAAGTTACACAGTGAATGTGACAGATGGGAGCTCATATGATAACTTGTTGAACAATATTTGGTATCAGTCAGAGGAAGTCTTCCCCATTGATGGAACTCCAGAACAAAGAGATTTTACCTTTTGGGTCCCTGTTCATCCCTTCTACTATGAAATCTCCAAAAATCTAGAGAAAAAAATGAGAATTTCAGTAGTAGCTTGGCCTTGCATAGCTGTTTACGCTGTGATCATCAGCTTGATGCTTAAACACACAAATGATGCATTGTCTACAGATACACAGAAGTTGATCGACCAGGCCAACAAGAGTGGCCCTTACTTGGGCTTGGTAATTCTGAATTCTTTCGAACTGGACCCTCTTCTTCAATCTCCAAACTTCACTTCAACAAACTTGATCATAGATTTTTCCGGAAGGAGATTTCGGTTTGGAACCATTGCTGAAAAGAAAGTCATCTTAGTCATGACAGGAGTTTCCTGTCCATGTATTAGTCCCATAGAGCTCTTTGGAATTGACAGAGATATGGAAACGGGCCTCAAGATGAACTACTCCTTGAATCACAAGGAGACTACACGAGAAATTGGCTACTTCAAATTTTCAAAATATACAGTGAATGTGACAGGTGGCAGCTCATTTGATAATCTCTTAAACAACATTTGGTATCAACCTGAAGAAGTCTTCCCTATTGATGGAACTCCAGAACAAAGACATGCCTTCTGGGTTGCTGTTGATCCCTTCTACTATGAAATCTCCAAAAAGCTTGAGGATTTGAAGCTTGAGAGTTGCCTAAACTCAACAACATGTTTGCCCCATACCCCAAAGGTGGCTTTAGTCGAAAGGGGAACAAGTGCCAGCATTTTCCTGTCTAATGCTGCTTACCGTAGCTTCTTATATGACAAGTTCAACATAAGCCCTTTGGACATGGAAAGCGCTTCTGTTGCCTTGATATGTCTTCAGCAAAGGGTGCCTTTCATTGCAATCAGGGCTCTCTGTTCTGGTCTAACAGGTGGTGGCTCCGATGATCACACTGAAGCTGGCAAGTTCATTAGCCTTGCTTCGAAAAATTCAGTTACAGCTGTTGTGGAATTTATCAAACAGCTATCACTTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNP_UDP_1

Protein Analysis

543

Amino Acids

60.52

Weight (kDa)

5.46

Isoelectric Point (pI)

38.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNP_UDP_1 PF01048 49 - 158 2.1e-15 Phosphorylase superfamily
PNP_UDP_1 PF01048 455 - 538 7.1e-08 Phosphorylase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1483
AccI GTMKAC 1 cut(s) 791
AccIII TCCGGA 1 cut(s) 929
AciI CCGC 1 cut(s) 119
AclWI GGATC 1 cut(s) 1244
AcoI YGGCCR 1 cut(s) 120
AcsI RAATTY 6 cut(s) 493, 708, 859, 1112, 1582, 1604
AcuI CTGAAG 4 cut(s) 495, 1209, 1457, 1569
AfaI GTAC 1 cut(s) 360
AfeI AGCGCT 1 cut(s) 1450
AfiI CCNNNNNNNGG 6 cut(s) 143, 617, 841, 842, 1208, 1342
AflIII ACRYGT 1 cut(s) 1319
AjnI CCWGG 2 cut(s) 449, 816
AjuI GAANNNNNNNTTGG 4 cut(s) 260, 292, 886, 918
Alw21I GWGCWC 2 cut(s) 560, 1023
Alw26I GTCTC 2 cut(s) 92, 1079
AlwI GGATC 1 cut(s) 1244
Aor13HI TCCGGA 1 cut(s) 929
Aor51HI AGCGCT 1 cut(s) 1450
AoxI GGCC 6 cut(s) 120, 470, 725, 819, 832, 1051
ApeKI GCWGC 3 cut(s) 83, 1146, 1391
ApoI RAATTY 6 cut(s) 493, 708, 859, 1112, 1582, 1604
AseI ATTAAT 1 cut(s) 303
Asp700I GAANNNNTTC 1 cut(s) 863
AspLEI GCGC 1 cut(s) 1451
AspS9I GGNCC 8 cut(s) 134, 429, 447, 470, 652, 833, 874, 1051
AsuHPI GGTGA 1 cut(s) 193
AsuII TTCGAA 2 cut(s) 867, 1577
AvaII GGWCC 5 cut(s) 134, 429, 447, 652, 874
BanI GGYRCC 1 cut(s) 1483
BanII GRGCYC 3 cut(s) 560, 1023, 1507
BarI GAAGNNNNNNTAC 2 cut(s) 342, 374
BauI CACGAG 1 cut(s) 1092
BbsI GAAGAC 3 cut(s) 598, 1189, 1463
Bbv12I GWGCWC 2 cut(s) 560, 1023
BbvI GCAGC 3 cut(s) 70, 1158, 1378
BccI CCATC 4 cut(s) 125, 545, 611, 1202
BciT130I CCWGG 2 cut(s) 451, 818
BclI TGATCA 4 cut(s) 216, 750, 915, 1540
BcoDI GTCTC 2 cut(s) 92, 1079
BfaI CTAG 1 cut(s) 692
BfmI CTRYAG 1 cut(s) 792
BfoI RGCGCY 1 cut(s) 1452
BisI GCNGC 4 cut(s) 84, 120, 1147, 1392
BlsI GCNGC 4 cut(s) 85, 121, 1148, 1393
Bme1390I CCNGG 2 cut(s) 451, 818
Bme18I GGWCC 5 cut(s) 134, 429, 447, 652, 874
BmgT120I GGNCC 8 cut(s) 134, 429, 447, 470, 652, 833, 874, 1051
BmiI GGNNCC 8 cut(s) 253, 431, 653, 654, 876, 952, 1485, 1534
BmrFI CCNGG 2 cut(s) 451, 818
BmrI ACTGGG 1 cut(s) 302
BmsI GCATC 2 cut(s) 753, 772
BmuI ACTGGG 1 cut(s) 302
BpiI GAAGAC 3 cut(s) 598, 1189, 1463
BpmI CTGGAG 2 cut(s) 609, 1200
Bpu14I TTCGAA 2 cut(s) 867, 1577
BpuEI CTTGAG 4 cut(s) 89, 1040, 1301, 1316
BsaWI WCCGGW 1 cut(s) 929
Bsc4I CCNNNNNNNGG 6 cut(s) 143, 617, 841, 842, 1208, 1342
Bse1I ACTGG 2 cut(s) 297, 876
Bse3DI GCAATG 4 cut(s) 255, 385, 954, 1491
BseAI TCCGGA 1 cut(s) 929
BseBI CCWGG 2 cut(s) 451, 818
BseGI GGATG 1 cut(s) 661
BseLI CCNNNNNNNGG 6 cut(s) 143, 617, 841, 842, 1208, 1342
BseMI GCAATG 4 cut(s) 255, 385, 954, 1491
BseMII CTCAG 2 cut(s) 335, 434
BseNI ACTGG 2 cut(s) 297, 876
BseXI GCAGC 3 cut(s) 70, 1158, 1378
BshFI GGCC 6 cut(s) 122, 472, 727, 821, 834, 1053
BshNI GGYRCC 1 cut(s) 1483
BsiHKAI GWGCWC 2 cut(s) 560, 1023
BsiSI CCGG 2 cut(s) 95, 930
BslFI GGGAC 3 cut(s) 415, 638, 996
BslI CCNNNNNNNGG 6 cut(s) 143, 617, 841, 842, 1208, 1342
BsmAI GTCTC 2 cut(s) 92, 1079
BsmFI GGGAC 3 cut(s) 415, 638, 996
BsnI GGCC 6 cut(s) 122, 472, 727, 821, 834, 1053
Bsp119I TTCGAA 2 cut(s) 867, 1577
Bsp1286I GDGCHC 3 cut(s) 560, 1023, 1507
Bsp13I TCCGGA 1 cut(s) 929
Bsp143I GATC 8 cut(s) 111, 188, 216, 750, 810, 915, 1249, 1540
BspACI CCGC 1 cut(s) 119
BspANI GGCC 6 cut(s) 122, 472, 727, 821, 834, 1053
BspCNI CTCAG 2 cut(s) 334, 433
BspEI TCCGGA 1 cut(s) 929
BspHI TCATGA 1 cut(s) 981
BspLI GGNNCC 8 cut(s) 253, 431, 653, 654, 876, 952, 1485, 1534
BspPI GGATC 1 cut(s) 1244
BspT104I TTCGAA 2 cut(s) 867, 1577
BspT107I GGYRCC 1 cut(s) 1483
BsrDI GCAATG 4 cut(s) 255, 385, 954, 1491
BsrI ACTGG 2 cut(s) 297, 876
BssMI GATC 8 cut(s) 111, 188, 216, 750, 810, 915, 1249, 1540
BssSI CACGAG 1 cut(s) 1092
Bst2BI CACGAG 1 cut(s) 1092
Bst2UI CCWGG 2 cut(s) 451, 818
Bst4CI ACNGT 3 cut(s) 538, 1129, 1400
Bst6I CTCTTC 3 cut(s) 36, 186, 885
BstAPI GCANNNNNTGC 1 cut(s) 1483
BstBI TTCGAA 2 cut(s) 867, 1577
BstC8I GCNNGC 3 cut(s) 376, 1372, 1555
BstDEI CTNAG 4 cut(s) 321, 332, 420, 976
BstENI CCTNNNNNAGG 1 cut(s) 141
BstF5I GGATG 1 cut(s) 661
BstH2I RGCGCY 1 cut(s) 1452
BstHHI GCGC 1 cut(s) 1451
BstKTI GATC 8 cut(s) 114, 191, 219, 753, 813, 918, 1252, 1543
BstMAI GTCTC 2 cut(s) 92, 1079
BstMBI GATC 8 cut(s) 111, 188, 216, 750, 810, 915, 1249, 1540
BstMWI GCNNNNNNNGC 8 cut(s) 47, 125, 375, 380, 743, 1457, 1483, 1502
BstNI CCWGG 2 cut(s) 451, 818
BstNSI RCATGY 3 cut(s) 340, 1232, 1323
BstSCI CCNGG 2 cut(s) 449, 816
BstSFI CTRYAG 1 cut(s) 792
BstV1I GCAGC 3 cut(s) 70, 1158, 1378
BstV2I GAAGAC 3 cut(s) 598, 1189, 1463
BsuRI GGCC 6 cut(s) 122, 472, 727, 821, 834, 1053
BtsCI GGATG 1 cut(s) 661
BtsIMutI CAGTG 4 cut(s) 349, 543, 1134, 1545
Cac8I GCNNGC 3 cut(s) 376, 1372, 1555
CciI TCATGA 1 cut(s) 981
CfoI GCGC 1 cut(s) 1451
Cfr13I GGNCC 8 cut(s) 134, 429, 447, 470, 652, 833, 874, 1051
Csp6I GTAC 1 cut(s) 359
CspCI CAANNNNNGTGG 2 cut(s) 811, 846
CviAII CATG 7 cut(s) 337, 467, 982, 1002, 1229, 1320, 1441
CviQI GTAC 1 cut(s) 359
DdeI CTNAG 4 cut(s) 321, 332, 420, 976
DpnI GATC 8 cut(s) 113, 190, 218, 752, 812, 917, 1251, 1542
DpnII GATC 8 cut(s) 111, 188, 216, 750, 810, 915, 1249, 1540
EaeI YGGCCR 1 cut(s) 120
Eam1104I CTCTTC 3 cut(s) 36, 186, 885
EarI CTCTTC 3 cut(s) 36, 186, 885
Ecl136II GAGCTC 2 cut(s) 558, 1021
Eco24I GRGCYC 3 cut(s) 560, 1023, 1507
Eco47I GGWCC 5 cut(s) 134, 429, 447, 652, 874
Eco47III AGCGCT 1 cut(s) 1450
Eco53kI GAGCTC 2 cut(s) 558, 1021
Eco57I CTGAAG 4 cut(s) 495, 1209, 1457, 1569
EcoICRI GAGCTC 2 cut(s) 558, 1021
EcoNI CCTNNNNNAGG 1 cut(s) 141
EcoO109I RGGNCCY 1 cut(s) 652
EcoRI GAATTC 1 cut(s) 859
EcoRII CCWGG 2 cut(s) 449, 816
EcoT22I ATGCAT 1 cut(s) 787
EcoT38I GRGCYC 3 cut(s) 560, 1023, 1507
FaeI CATG 7 cut(s) 340, 470, 985, 1005, 1232, 1323, 1444
FalI AAGNNNNNCTT 2 cut(s) 1471, 1503
FaqI GGGAC 3 cut(s) 415, 638, 996
FatI CATG 7 cut(s) 336, 466, 981, 1001, 1228, 1319, 1440
FauNDI CATATG 1 cut(s) 562
FbaI TGATCA 4 cut(s) 216, 750, 915, 1540
FblI GTMKAC 1 cut(s) 791
Fnu4HI GCNGC 4 cut(s) 84, 120, 1147, 1392
FokI GGATG 1 cut(s) 648
FriOI GRGCYC 3 cut(s) 560, 1023, 1507
Fsp4HI GCNGC 4 cut(s) 84, 120, 1147, 1392
FspBI CTAG 1 cut(s) 692
GlaI GCGC 1 cut(s) 1450
GluI GCNGC 4 cut(s) 84, 120, 1147, 1392
GsuI CTGGAG 2 cut(s) 609, 1200
HaeII RGCGCY 1 cut(s) 1452
HaeIII GGCC 6 cut(s) 122, 472, 727, 821, 834, 1053
HapII CCGG 2 cut(s) 95, 930
HhaI GCGC 1 cut(s) 1451
Hin1II CATG 7 cut(s) 340, 470, 985, 1005, 1232, 1323, 1444
Hin6I GCGC 1 cut(s) 1449
HinP1I GCGC 1 cut(s) 1449
HindIII AAGCTT 2 cut(s) 1277, 1292
HinfI GANTC 4 cut(s) 28, 240, 385, 1075
HpaII CCGG 2 cut(s) 95, 930
HphI GGTGA 1 cut(s) 193
Hpy166II GTNNAC 2 cut(s) 742, 792
Hpy188I TCNGA 3 cut(s) 598, 858, 1537
Hpy188III TCNNGA 7 cut(s) 231, 626, 692, 930, 982, 1057, 1217
Hpy8I GTNNAC 2 cut(s) 742, 792
HpyAV CCTTC 6 cut(s) 344, 403, 676, 927, 1243, 1264
HpyCH4III ACNGT 3 cut(s) 538, 1129, 1400
HpyCH4V TGCA 6 cut(s) 308, 404, 527, 732, 785, 1496
HpyF10VI GCNNNNNNNGC 8 cut(s) 47, 125, 375, 380, 743, 1457, 1483, 1502
HpyF3I CTNAG 4 cut(s) 321, 332, 420, 976
Hsp92II CATG 7 cut(s) 340, 470, 985, 1005, 1232, 1323, 1444
HspAI GCGC 1 cut(s) 1449
KflI GGGWCCC 1 cut(s) 652
Kpn2I TCCGGA 1 cut(s) 929
Ksp22I TGATCA 4 cut(s) 216, 750, 915, 1540
Kzo9I GATC 8 cut(s) 111, 188, 216, 750, 810, 915, 1249, 1540
LmnI GCTCC 2 cut(s) 555, 1538
Lsp1109I GCAGC 3 cut(s) 70, 1158, 1378
LweI GCATC 2 cut(s) 753, 772
MaeI CTAG 1 cut(s) 692
MaeIII GTNAC 4 cut(s) 530, 544, 1135, 1588
MalI GATC 8 cut(s) 113, 190, 218, 752, 812, 917, 1251, 1542
MboI GATC 8 cut(s) 111, 188, 216, 750, 810, 915, 1249, 1540
MhlI GDGCHC 3 cut(s) 560, 1023, 1507
MlyI GAGTC 1 cut(s) 22
MmeI TCCRAC 2 cut(s) 5, 413
MnlI CCTC 8 cut(s) 189, 214, 429, 498, 592, 888, 1064, 1276
Mph1103I ATGCAT 1 cut(s) 787
MroI TCCGGA 1 cut(s) 929
MroXI GAANNNNTTC 1 cut(s) 863
MseI TTAA 3 cut(s) 303, 768, 1166
MslI CAYNNNNRTG 1 cut(s) 777
MspA1I CMGCKG 2 cut(s) 374, 1595
MspI CCGG 2 cut(s) 95, 930
MspR9I CCNGG 2 cut(s) 451, 818
MvaI CCWGG 2 cut(s) 451, 818
MwoI GCNNNNNNNGC 8 cut(s) 47, 125, 375, 380, 743, 1457, 1483, 1502
NdeI CATATG 1 cut(s) 562
NdeII GATC 8 cut(s) 111, 188, 216, 750, 810, 915, 1249, 1540
NlaIII CATG 7 cut(s) 340, 470, 985, 1005, 1232, 1323, 1444
NlaIV GGNNCC 8 cut(s) 253, 431, 653, 654, 876, 952, 1485, 1534
NmuCI GTSAC 2 cut(s) 544, 1135
NsiI ATGCAT 1 cut(s) 787
NspI RCATGY 3 cut(s) 340, 1232, 1323
NspV TTCGAA 2 cut(s) 867, 1577
PagI TCATGA 1 cut(s) 981
PciI ACATGT 1 cut(s) 1319
PdmI GAANNNNTTC 1 cut(s) 863
PfeI GAWTC 3 cut(s) 240, 385, 1075
PkrI GCNGC 4 cut(s) 85, 121, 1148, 1393
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
PpuMI RGGWCCY 1 cut(s) 652
PscI ACATGT 1 cut(s) 1319
PshBI ATTAAT 1 cut(s) 303
Psp124BI GAGCTC 2 cut(s) 560, 1023
Psp5II RGGWCCY 1 cut(s) 652
Psp6I CCWGG 2 cut(s) 449, 816
PspGI CCWGG 2 cut(s) 449, 816
PspN4I GGNNCC 8 cut(s) 253, 431, 653, 654, 876, 952, 1485, 1534
PspPI GGNCC 8 cut(s) 134, 429, 447, 470, 652, 833, 874, 1051
PspPPI RGGWCCY 1 cut(s) 652
PsrI GAACNNNNNNTAC 2 cut(s) 244, 276
PvuII CAGCTG 2 cut(s) 374, 1595
RsaI GTAC 1 cut(s) 360
RsaNI GTAC 1 cut(s) 359
RseI CAYNNNNRTG 1 cut(s) 777
SacI GAGCTC 2 cut(s) 560, 1023
SaqAI TTAA 3 cut(s) 303, 768, 1166
SatI GCNGC 4 cut(s) 84, 120, 1147, 1392
Sau3AI GATC 8 cut(s) 111, 188, 216, 750, 810, 915, 1249, 1540
Sau96I GGNCC 8 cut(s) 134, 429, 447, 470, 652, 833, 874, 1051
SchI GAGTC 1 cut(s) 22
ScrFI CCNGG 2 cut(s) 451, 818
SduI GDGCHC 3 cut(s) 560, 1023, 1507
SfaNI GCATC 2 cut(s) 753, 772
SfcI CTRYAG 1 cut(s) 792
SfuI TTCGAA 2 cut(s) 867, 1577
SinI GGWCC 5 cut(s) 134, 429, 447, 652, 874
SmiMI CAYNNNNRTG 1 cut(s) 777
SmlI CTYRAG 4 cut(s) 104, 1055, 1280, 1295
SmoI CTYRAG 4 cut(s) 104, 1055, 1280, 1295
SsiI CCGC 1 cut(s) 119
SspI AATATT 1 cut(s) 583
SspMI CTAG 1 cut(s) 692
SstI GAGCTC 2 cut(s) 560, 1023
StyD4I CCNGG 2 cut(s) 449, 816
TaaI ACNGT 3 cut(s) 538, 1129, 1400
TaqI TCGA 7 cut(s) 114, 187, 497, 813, 867, 1353, 1577
TauI GCSGC 1 cut(s) 122
TfiI GAWTC 3 cut(s) 240, 385, 1075
Tru1I TTAA 3 cut(s) 303, 768, 1166
Tru9I TTAA 3 cut(s) 303, 768, 1166
TscAI CASTG 4 cut(s) 349, 543, 1134, 1552
TseFI GTSAC 2 cut(s) 544, 1135
TseI GCWGC 3 cut(s) 83, 1146, 1391
Tsp45I GTSAC 2 cut(s) 544, 1135
TspDTI ATGAA 6 cut(s) 650, 690, 1076, 1278, 1480, 1552
TspRI CASTG 4 cut(s) 349, 543, 1134, 1552
VpaK11BI GGWCC 5 cut(s) 134, 429, 447, 652, 874
VspI ATTAAT 1 cut(s) 303
XagI CCTNNNNNAGG 1 cut(s) 141
XapI RAATTY 6 cut(s) 493, 708, 859, 1112, 1582, 1604
XbaI TCTAGA 1 cut(s) 691
XceI RCATGY 3 cut(s) 340, 1232, 1323
XmiI GTMKAC 1 cut(s) 791
XmnI GAANNNNTTC 1 cut(s) 863
XspI CTAG 1 cut(s) 692
Zsp2I ATGCAT 1 cut(s) 787
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.