Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000829

Physical Location & Seq

Genomic Coordinates Reverse (-)

15261925 .. 15262500

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG103200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGAAAAAGATTGATAGGATGAATAGGAAAGGCCCATACTTGGGTGTTATAGTACCAAATTCCTTTGAGCTCACCCCTCTTCTTCAATCTGCAAGCTTTGTGGCTGATCAGCAGCTTCCCAGTTTGGATTTTTCAGGAAGAAGGTTTCGATTCGGTAGATTGGATAATCAAAGTGTTGTAATTGCTATGACAGGGTTGAGCATGCTTAATGCAGGAGTAACAACTCAATTATTGCTTACCCTATTCAAGGTGAAAGGGGTTGTGCACTATGGAATTGCAGGAAATGCAGATCCTCAACTCCAAATTGGAGATGTCACTATCCCTCAGTATTGGGCTCATACAAGACTTTGGAATTGGCAGAGGTTTGGGGATGGTCCGGATGATTTGTTATCTTTGGAGTCATTCGGTGACTACAACAGGGATGTTGGTCACATAAAATTTTCTGAATTCAACAACAAAACAGAAACTGAGAAGTCTGTTGATAATTTTCTGAACAATGCCTGGTACCAACCGGAAGAGATCTTCCCAGTTTATGGCACTCCTGAGGTTCGGCAGCCGCCTTTTGGGTCCCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNP_UDP_1

Protein Analysis

191

Amino Acids

21.63

Weight (kDa)

5.9

Isoelectric Point (pI)

34.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PNP_UDP_1	PF01048	14 - 113	2.8e-16	Phosphorylase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28940 AT4G28940
fragaria_vesca	FvH4_1g05530 FvH4_2g35741 FvH4_2g35750 FvH4_2g35760 FvH4_2g35761 FvH4_2g35762
malus_domestica	MD15G1095100.v1.1 MD15G1095200.v1.1 MD15G1095300.v1.1 MD15G1191300.v1.1
prunus_persica	Prupe.1G450100_v2.0.a1 Prupe.1G450200_v2.0.a1 Prupe.7G225900_v2.0.a1 Prupe.7G225900_v2.0.a1 Prupe.7G225900_v2.0.a1
pyrus_communis	pycom15g08760 pycom15g08770 pycom15g17130
rosa_chinensis	RchiOBHm_Chr1g0336711 RchiOBHm_Chr2g0091231 RchiOBHm_Chr6g0259261 RchiOBHm_Chr6g0259271 RchiOBHm_Chr6g0306011 RchiOBHm_Chr6g0306021
rosa_laevigata	RLG00000010830 RLG00000010831 RLG00000010832 RLG00000014544 RLG00000016193 RLG00000029340
rosa_multiflora	Rmu_sc0002270.1_g000016 Rmu_sc0011974.1_g000004 Rmu_sc0020534.1_g000001 Rmu_sc0035114.1_g000001 Rmu_sc0036553.1_g000001 Rmu_ssc0000050.1_g000090
rosa_roxburghii	Rroxscaffold_2G00150370 Rroxscaffold_7G00162110 Rroxscaffold_7G00162130
rosa_rugosa	Rorug02G0014600 Rorug06G0346400 Rorug06G0346600
rosa_samantha	Rh2AG060400 Rh2BG059100 Rh2CG060900 Rh2DG059700 Rh6AG103200 Rh6AG458200 Rh6AG458400 Rh6BG095600 Rh6BG442400 Rh6BG442500 Rh6BG442600 Rh6BG442700 Rh6CG092500 Rh6CG472700 Rh6CG472800 Rh6CG472900 Rh6DG086500 Rh6DG458800 Rh6DG459000 Rh6DG459100
rosa_wichuraiana	Rw2G004950 Rw6G008910 Rw6G039960 Rw6G039970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	504
AccB1I	GGYRCC	1 cut(s)	504
AccB7I	CCANNNNNTGG	1 cut(s)	533
AccIII	TCCGGA	1 cut(s)	376
AciI	CCGC	1 cut(s)	557
AclWI	GGATC	1 cut(s)	284
AcsI	RAATTY	3 cut(s)	58, 437, 446
AfaI	GTAC	2 cut(s)	54, 506
AfiI	CCNNNNNNNGG	5 cut(s)	40, 41, 247, 533, 563
AgsI	TTSAA	3 cut(s)	86, 247, 451
AjnI	CCWGG	1 cut(s)	500
AluBI	AGCT	3 cut(s)	70, 96, 115
AluI	AGCT	3 cut(s)	70, 96, 115
Alw21I	GWGCWC	2 cut(s)	72, 267
Alw44I	GTGCAC	1 cut(s)	263
AlwI	GGATC	1 cut(s)	284
AlwNI	CAGNNNCTG	1 cut(s)	467
Aor13HI	TCCGGA	1 cut(s)	376
AoxI	GGCC	1 cut(s)	31
ApaLI	GTGCAC	1 cut(s)	263
ApeKI	GCWGC	2 cut(s)	112, 553
ApoI	RAATTY	3 cut(s)	58, 437, 446
Asp718I	GGTACC	1 cut(s)	504
AspS9I	GGNCC	3 cut(s)	32, 374, 567
AsuHPI	GGTGA	3 cut(s)	64, 262, 419
AvaII	GGWCC	2 cut(s)	374, 567
AxyI	CCTNAGG	1 cut(s)	543
BaeGI	GKGCMC	1 cut(s)	267
BanI	GGYRCC	1 cut(s)	504
BanII	GRGCYC	2 cut(s)	72, 337
Bbv12I	GWGCWC	2 cut(s)	72, 267
BbvI	GCAGC	2 cut(s)	124, 565
BccI	CCATC	1 cut(s)	365
BciT130I	CCWGG	1 cut(s)	502
BclI	TGATCA	1 cut(s)	106
BglII	AGATCT	1 cut(s)	519
BisI	GCNGC	3 cut(s)	113, 554, 557
BlsI	GCNGC	3 cut(s)	114, 555, 558
Bme1390I	CCNGG	1 cut(s)	502
Bme18I	GGWCC	2 cut(s)	374, 567
BmgT120I	GGNCC	3 cut(s)	32, 374, 567
BmiI	GGNNCC	3 cut(s)	506, 568, 569
BmrFI	CCNGG	1 cut(s)	502
BmrI	ACTGGG	2 cut(s)	114, 521
BmuI	ACTGGG	2 cut(s)	114, 521
BsaWI	WCCGGW	2 cut(s)	376, 511
Bsc4I	CCNNNNNNNGG	5 cut(s)	40, 41, 247, 533, 563
Bse1I	ACTGG	2 cut(s)	120, 527
Bse21I	CCTNAGG	1 cut(s)	543
BseAI	TCCGGA	1 cut(s)	376
BseBI	CCWGG	1 cut(s)	502
BseGI	GGATG	4 cut(s)	24, 376, 385, 427
BseLI	CCNNNNNNNGG	5 cut(s)	40, 41, 247, 533, 563
BseMII	CTCAG	3 cut(s)	338, 459, 534
BseNI	ACTGG	2 cut(s)	120, 527
BseSI	GKGCMC	1 cut(s)	267
BseXI	GCAGC	2 cut(s)	124, 565
BshFI	GGCC	1 cut(s)	33
BshNI	GGYRCC	1 cut(s)	504
BsiHKAI	GWGCWC	2 cut(s)	72, 267
BsiSI	CCGG	2 cut(s)	377, 512
BslFI	GGGAC	1 cut(s)	553
BslI	CCNNNNNNNGG	5 cut(s)	40, 41, 247, 533, 563
BsmFI	GGGAC	1 cut(s)	553
BsnI	GGCC	1 cut(s)	33
Bsp1286I	GDGCHC	3 cut(s)	72, 267, 337
Bsp13I	TCCGGA	1 cut(s)	376
Bsp143I	GATC	3 cut(s)	106, 289, 519
BspACI	CCGC	1 cut(s)	557
BspANI	GGCC	1 cut(s)	33
BspCNI	CTCAG	3 cut(s)	337, 460, 535
BspEI	TCCGGA	1 cut(s)	376
BspLI	GGNNCC	3 cut(s)	506, 568, 569
BspPI	GGATC	1 cut(s)	284
BspT107I	GGYRCC	1 cut(s)	504
BsrI	ACTGG	2 cut(s)	120, 527
BssMI	GATC	3 cut(s)	106, 289, 519
Bst2UI	CCWGG	1 cut(s)	502
Bst6I	CTCTTC	2 cut(s)	84, 510
BstAPI	GCANNNNNTGC	1 cut(s)	284
BstC8I	GCNNGC	2 cut(s)	94, 203
BstDEI	CTNAG	3 cut(s)	324, 468, 543
BstENI	CCTNNNNNAGG	1 cut(s)	245
BstF5I	GGATG	4 cut(s)	24, 376, 385, 427
BstKTI	GATC	3 cut(s)	109, 292, 522
BstMBI	GATC	3 cut(s)	106, 289, 519
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstNI	CCWGG	1 cut(s)	502
BstNSI	RCATGY	1 cut(s)	205
BstSCI	CCNGG	1 cut(s)	500
BstSLI	GKGCMC	1 cut(s)	267
BstV1I	GCAGC	2 cut(s)	124, 565
BstX2I	RGATCY	2 cut(s)	289, 519
BstYI	RGATCY	2 cut(s)	289, 519
Bsu36I	CCTNAGG	1 cut(s)	543
BsuRI	GGCC	1 cut(s)	33
BtsCI	GGATG	4 cut(s)	24, 376, 385, 427
Cac8I	GCNNGC	2 cut(s)	94, 203
CaiI	CAGNNNCTG	1 cut(s)	467
Cfr13I	GGNCC	3 cut(s)	32, 374, 567
Csp6I	GTAC	2 cut(s)	53, 505
CspCI	CAANNNNNGTGG	2 cut(s)	81, 116
CviAII	CATG	1 cut(s)	202
CviJI	RGCY	7 cut(s)	33, 70, 96, 104, 115, 335, 556
CviKI_1	RGCY	7 cut(s)	33, 70, 96, 104, 115, 335, 556
CviQI	GTAC	2 cut(s)	53, 505
DdeI	CTNAG	3 cut(s)	324, 468, 543
DpnI	GATC	3 cut(s)	108, 291, 521
DpnII	GATC	3 cut(s)	106, 289, 519
Eam1104I	CTCTTC	2 cut(s)	84, 510
EarI	CTCTTC	2 cut(s)	84, 510
Ecl136II	GAGCTC	1 cut(s)	70
Eco24I	GRGCYC	2 cut(s)	72, 337
Eco47I	GGWCC	2 cut(s)	374, 567
Eco53kI	GAGCTC	1 cut(s)	70
Eco81I	CCTNAGG	1 cut(s)	543
EcoICRI	GAGCTC	1 cut(s)	70
EcoNI	CCTNNNNNAGG	1 cut(s)	245
EcoO109I	RGGNCCY	1 cut(s)	567
EcoRI	GAATTC	1 cut(s)	446
EcoRII	CCWGG	1 cut(s)	500
EcoT38I	GRGCYC	2 cut(s)	72, 337
FaeI	CATG	1 cut(s)	205
FaiI	YATR	8 cut(s)	37, 50, 188, 203, 270, 339, 434, 534
FaqI	GGGAC	1 cut(s)	553
FatI	CATG	1 cut(s)	201
FbaI	TGATCA	1 cut(s)	106
Fnu4HI	GCNGC	3 cut(s)	113, 554, 557
FokI	GGATG	4 cut(s)	31, 383, 392, 434
FriOI	GRGCYC	2 cut(s)	72, 337
Fsp4HI	GCNGC	3 cut(s)	113, 554, 557
GluI	GCNGC	3 cut(s)	113, 554, 557
HaeIII	GGCC	1 cut(s)	33
HapII	CCGG	2 cut(s)	377, 512
Hin1II	CATG	1 cut(s)	205
HindIII	AAGCTT	1 cut(s)	94
HinfI	GANTC	2 cut(s)	150, 398
HpaII	CCGG	2 cut(s)	377, 512
HphI	GGTGA	3 cut(s)	64, 262, 419
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	2 cut(s)	445, 492
Hpy188III	TCNNGA	3 cut(s)	135, 377, 542
Hpy8I	GTNNAC	1 cut(s)	265
HpyAV	CCTTC	1 cut(s)	135
HpyCH4V	TGCA	5 cut(s)	92, 212, 265, 278, 287
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpyF3I	CTNAG	3 cut(s)	324, 468, 543
Hsp92II	CATG	1 cut(s)	205
KflI	GGGWCCC	1 cut(s)	567
Kpn2I	TCCGGA	1 cut(s)	376
KpnI	GGTACC	1 cut(s)	508
Ksp22I	TGATCA	1 cut(s)	106
Kzo9I	GATC	3 cut(s)	106, 289, 519
Lsp1109I	GCAGC	2 cut(s)	124, 565
MaeIII	GTNAC	4 cut(s)	217, 313, 407, 428
MalI	GATC	3 cut(s)	108, 291, 521
MboI	GATC	3 cut(s)	106, 289, 519
MboII	GAAGA	5 cut(s)	71, 74, 150, 514, 527
MflI	RGATCY	2 cut(s)	289, 519
MhlI	GDGCHC	3 cut(s)	72, 267, 337
MluCI	AATT	9 cut(s)	58, 180, 227, 273, 303, 352, 437, 446, 484
MlyI	GAGTC	1 cut(s)	407
MnlI	CCTC	5 cut(s)	87, 303, 333, 354, 538
MroI	TCCGGA	1 cut(s)	376
MseI	TTAA	1 cut(s)	207
MspI	CCGG	2 cut(s)	377, 512
MspR9I	CCNGG	1 cut(s)	502
MvaI	CCWGG	1 cut(s)	502
MwoI	GCNNNNNNNGC	1 cut(s)	284
NdeII	GATC	3 cut(s)	106, 289, 519
NlaIII	CATG	1 cut(s)	205
NlaIV	GGNNCC	3 cut(s)	506, 568, 569
NmuCI	GTSAC	3 cut(s)	313, 407, 428
NspI	RCATGY	1 cut(s)	205
PaeI	GCATGC	1 cut(s)	205
PfeI	GAWTC	1 cut(s)	150
PflMI	CCANNNNNTGG	1 cut(s)	533
PkrI	GCNGC	3 cut(s)	114, 555, 558
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
PpuMI	RGGWCCY	1 cut(s)	567
Psp124BI	GAGCTC	1 cut(s)	72
Psp5II	RGGWCCY	1 cut(s)	567
Psp6I	CCWGG	1 cut(s)	500
PspGI	CCWGG	1 cut(s)	500
PspN4I	GGNNCC	3 cut(s)	506, 568, 569
PspPI	GGNCC	3 cut(s)	32, 374, 567
PspPPI	RGGWCCY	1 cut(s)	567
PstNI	CAGNNNCTG	1 cut(s)	467
PsuI	RGATCY	2 cut(s)	289, 519
RsaI	GTAC	2 cut(s)	54, 506
RsaNI	GTAC	2 cut(s)	53, 505
SacI	GAGCTC	1 cut(s)	72
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	3 cut(s)	113, 554, 557
Sau3AI	GATC	3 cut(s)	106, 289, 519
Sau96I	GGNCC	3 cut(s)	32, 374, 567
SchI	GAGTC	1 cut(s)	407
ScrFI	CCNGG	1 cut(s)	502
SduI	GDGCHC	3 cut(s)	72, 267, 337
SetI	ASST	7 cut(s)	72, 98, 117, 146, 252, 365, 549
SinI	GGWCC	2 cut(s)	374, 567
SphI	GCATGC	1 cut(s)	205
Sse9I	AATT	9 cut(s)	58, 180, 227, 273, 303, 352, 437, 446, 484
SsiI	CCGC	1 cut(s)	557
SstI	GAGCTC	1 cut(s)	72
StyD4I	CCNGG	1 cut(s)	500
TaqI	TCGA	1 cut(s)	148
TasI	AATT	9 cut(s)	58, 180, 227, 273, 303, 352, 437, 446, 484
TauI	GCSGC	1 cut(s)	559
TfiI	GAWTC	1 cut(s)	150
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TseFI	GTSAC	3 cut(s)	313, 407, 428
TseI	GCWGC	2 cut(s)	112, 553
Tsp45I	GTSAC	3 cut(s)	313, 407, 428
TspDTI	ATGAA	2 cut(s)	17, 35
Van91I	CCANNNNNTGG	1 cut(s)	533
VneI	GTGCAC	1 cut(s)	263
VpaK11BI	GGWCC	2 cut(s)	374, 567
XagI	CCTNNNNNAGG	1 cut(s)	245
XapI	RAATTY	3 cut(s)	58, 437, 446
XceI	RCATGY	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.