RLG00000014544

Bark storage protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000829
Physical Location & Seq
Forward (+)
54556392 .. 54557438
1047 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014544

Sequence Viewer

Length: 990 bp
ATGGAGAGCCATTTGAAGATGATGTTGGTGGTTTTCCTTGTATTGGTTTTGGAGATTAGCACTAGAACAGTTGATGGTGCAGTTTCTCTAATACCAAATTCCTTTGAGCTCACCCCTCTTCTTCAATCTGCAAGCTTTGTGGCTGATCAGCAGCTTCCCAGTTTGGATTTTTCAGGAAGAAGGTTTCGATTCGGTAGATTGGATAATCAATGTGTTGTAATTGCTATGACAGGGTTGAGCATGCTTAATGCAGGAGTAACAACTCAATTATTGCTTAGCCTATTCAAGGTGAAAGGGGTTGTGCACTATGGAATTGCAGGAAATGCAGATCCTCAACTCCAAATTGGAGATGTCACTATCCCTCAGTATTGGGCTCATACAGGACTTTGGAATTGGCAGAGGTTTGGGGATGGTCCTGATGATTTGTTATCTTTCGAGTCATTCGGAGACTACAGCAGGGATGTTGGTTACATAAAATTTTCCGAATTCAACAACAAAACAGAAACTGAGAAGTCTGTTGATAATTTTCTGAACAATGCTTGGTACCAACCGGAAGAGATCTTCCCAGTTTATGGCACTCCAGAAGTTCGGCAGCGCGCCTTTTGGGTCCCTGTAAACAAAAAATATTTTGCTCTTGCTCAACAACTACAGGATTTGAAGTTAGAGGGTTGTGTGAATACAACTTGTTTACCAAGAACACCAATAGTGGTGAGAGTGCAAAGGGGGATCAGTGCCAATGTGTTAGTTGACAATAGTGCAAACAGACAATTCTTGAACTCCAAGTTTAATGCCACTGCAATTGACATGGAAAGTGCTGCAGTAGCTCTGGCCTGTAAACAGCAAAAAACACCCTTCATAGTGATTAGGGCGCTATCAGATTTGGCCGGCGGAGGTTCCTCTGTGTCGAATGAAGCCTCTACTTTCGCATCATTGGCAGCTCAAAATGCAGCCACTGTCGTGCTCAAATTCATTTCCTTGTTGTCTTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNP_UDP_1

Protein Analysis

330

Amino Acids

36.26

Weight (kDa)

5.97

Isoelectric Point (pI)

29.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNP_UDP_1 PF01048 36 - 324 7.8e-29 Phosphorylase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 543
AccB1I GGYRCC 1 cut(s) 543
AccB7I CCANNNNNTGG 1 cut(s) 572
AccII CGCG 1 cut(s) 597
AciI CCGC 1 cut(s) 888
AclWI GGATC 2 cut(s) 323, 734
AcoI YGGCCR 1 cut(s) 882
AcsI RAATTY 4 cut(s) 97, 476, 485, 965
AfaI GTAC 1 cut(s) 545
AfiI CCNNNNNNNGG 3 cut(s) 43, 286, 572
AgsI TTSAA 6 cut(s) 16, 125, 286, 490, 658, 775
AjuI GAANNNNNNNTTGG 2 cut(s) 8, 40
AleI CACNNNNGTG 1 cut(s) 956
AluBI AGCT 5 cut(s) 109, 135, 154, 824, 938
AluI AGCT 5 cut(s) 109, 135, 154, 824, 938
Alw21I GWGCWC 3 cut(s) 111, 306, 963
Alw26I GTCTC 1 cut(s) 441
Alw44I GTGCAC 1 cut(s) 302
AlwI GGATC 2 cut(s) 323, 734
AlwNI CAGNNNCTG 2 cut(s) 506, 953
AoxI GGCC 2 cut(s) 828, 882
ApaLI GTGCAC 1 cut(s) 302
ApeKI GCWGC 5 cut(s) 151, 592, 815, 935, 947
ApoI RAATTY 4 cut(s) 97, 476, 485, 965
Asp718I GGTACC 1 cut(s) 543
AspLEI GCGC 3 cut(s) 597, 599, 871
AspS9I GGNCC 2 cut(s) 413, 607
AsuHPI GGTGA 3 cut(s) 103, 301, 721
AvaII GGWCC 2 cut(s) 413, 607
BaeGI GKGCMC 1 cut(s) 306
BanI GGYRCC 1 cut(s) 543
BanII GRGCYC 2 cut(s) 111, 376
BbsI GAAGAC 1 cut(s) 975
Bbv12I GWGCWC 3 cut(s) 111, 306, 963
BbvI GCAGC 5 cut(s) 163, 604, 802, 947, 959
BccI CCATC 2 cut(s) 68, 404
BclI TGATCA 1 cut(s) 145
BcoDI GTCTC 1 cut(s) 441
BfaI CTAG 1 cut(s) 63
BfmI CTRYAG 3 cut(s) 451, 647, 816
BfoI RGCGCY 1 cut(s) 872
BglII AGATCT 1 cut(s) 558
BisI GCNGC 5 cut(s) 152, 593, 816, 936, 948
BlpI GCTNAGC 1 cut(s) 275
BlsI GCNGC 5 cut(s) 153, 594, 817, 937, 949
Bme18I GGWCC 2 cut(s) 413, 607
BmgT120I GGNCC 2 cut(s) 413, 607
BmiI GGNNCC 4 cut(s) 545, 608, 609, 895
BmrI ACTGGG 2 cut(s) 153, 560
BmsI GCATC 1 cut(s) 935
BmuI ACTGGG 2 cut(s) 153, 560
BpiI GAAGAC 1 cut(s) 975
BpmI CTGGAG 1 cut(s) 564
Bpu1102I GCTNAGC 1 cut(s) 275
BsaWI WCCGGW 1 cut(s) 550
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 286, 572
Bse118I RCCGGY 1 cut(s) 884
Bse1I ACTGG 2 cut(s) 159, 566
BseGI GGATG 2 cut(s) 415, 466
BseLI CCNNNNNNNGG 3 cut(s) 43, 286, 572
BseMII CTCAG 2 cut(s) 377, 498
BseNI ACTGG 2 cut(s) 159, 566
BsePI GCGCGC 1 cut(s) 595
BseSI GKGCMC 1 cut(s) 306
BseXI GCAGC 5 cut(s) 163, 604, 802, 947, 959
BsgI GTGCAG 1 cut(s) 99
Bsh1236I CGCG 1 cut(s) 597
BshFI GGCC 2 cut(s) 830, 884
BshNI GGYRCC 1 cut(s) 543
BsiHKAI GWGCWC 3 cut(s) 111, 306, 963
BsiSI CCGG 2 cut(s) 551, 885
BslFI GGGAC 1 cut(s) 593
BslI CCNNNNNNNGG 3 cut(s) 43, 286, 572
BsmAI GTCTC 1 cut(s) 441
BsmFI GGGAC 1 cut(s) 593
BsnI GGCC 2 cut(s) 830, 884
Bsp1286I GDGCHC 4 cut(s) 111, 306, 376, 963
Bsp143I GATC 4 cut(s) 145, 328, 558, 726
Bsp1720I GCTNAGC 1 cut(s) 275
BspACI CCGC 1 cut(s) 888
BspANI GGCC 2 cut(s) 830, 884
BspCNI CTCAG 2 cut(s) 376, 499
BspFNI CGCG 1 cut(s) 597
BspLI GGNNCC 4 cut(s) 545, 608, 609, 895
BspMAI CTGCAG 1 cut(s) 820
BspPI GGATC 2 cut(s) 323, 734
BspT107I GGYRCC 1 cut(s) 543
BsrFI RCCGGY 1 cut(s) 884
BsrI ACTGG 2 cut(s) 159, 566
BssAI RCCGGY 1 cut(s) 884
BssHII GCGCGC 1 cut(s) 595
BssMI GATC 4 cut(s) 145, 328, 558, 726
Bst4CI ACNGT 2 cut(s) 70, 955
Bst6I CTCTTC 2 cut(s) 123, 549
BstAPI GCANNNNNTGC 1 cut(s) 323
BstC8I GCNNGC 4 cut(s) 133, 242, 597, 886
BstDEI CTNAG 3 cut(s) 275, 363, 507
BstENI CCTNNNNNAGG 1 cut(s) 284
BstF5I GGATG 2 cut(s) 415, 466
BstFNI CGCG 1 cut(s) 597
BstH2I RGCGCY 1 cut(s) 872
BstHHI GCGC 3 cut(s) 597, 599, 871
BstKTI GATC 4 cut(s) 148, 331, 561, 729
BstMAI GTCTC 1 cut(s) 441
BstMBI GATC 4 cut(s) 145, 328, 558, 726
BstMWI GCNNNNNNNGC 4 cut(s) 323, 821, 932, 944
BstNSI RCATGY 1 cut(s) 244
BstSFI CTRYAG 3 cut(s) 451, 647, 816
BstSLI GKGCMC 1 cut(s) 306
BstUI CGCG 1 cut(s) 597
BstV1I GCAGC 5 cut(s) 163, 604, 802, 947, 959
BstV2I GAAGAC 1 cut(s) 975
BstX2I RGATCY 2 cut(s) 328, 558
BstYI RGATCY 2 cut(s) 328, 558
BsuRI GGCC 2 cut(s) 830, 884
BtsCI GGATG 2 cut(s) 415, 466
BtsI GCAGTG 1 cut(s) 792
BtsIMutI CAGTG 3 cut(s) 736, 792, 951
Cac8I GCNNGC 4 cut(s) 133, 242, 597, 886
CaiI CAGNNNCTG 2 cut(s) 506, 953
CfoI GCGC 3 cut(s) 597, 599, 871
Cfr10I RCCGGY 1 cut(s) 884
Cfr13I GGNCC 2 cut(s) 413, 607
Csp6I GTAC 1 cut(s) 544
CspCI CAANNNNNGTGG 4 cut(s) 120, 155, 781, 816
CviAII CATG 2 cut(s) 241, 805
CviQI GTAC 1 cut(s) 544
DdeI CTNAG 3 cut(s) 275, 363, 507
DpnI GATC 4 cut(s) 147, 330, 560, 728
DpnII GATC 4 cut(s) 145, 328, 558, 726
EaeI YGGCCR 1 cut(s) 882
Eam1104I CTCTTC 2 cut(s) 123, 549
EarI CTCTTC 2 cut(s) 123, 549
EciI GGCGGA 1 cut(s) 903
Ecl136II GAGCTC 1 cut(s) 109
Eco24I GRGCYC 2 cut(s) 111, 376
Eco47I GGWCC 2 cut(s) 413, 607
Eco53kI GAGCTC 1 cut(s) 109
EcoICRI GAGCTC 1 cut(s) 109
EcoNI CCTNNNNNAGG 1 cut(s) 284
EcoO109I RGGNCCY 1 cut(s) 607
EcoRI GAATTC 1 cut(s) 485
EcoT38I GRGCYC 2 cut(s) 111, 376
FaeI CATG 2 cut(s) 244, 808
FaiI YATR 8 cut(s) 227, 242, 309, 378, 473, 573, 806, 857
FaqI GGGAC 1 cut(s) 593
FatI CATG 2 cut(s) 240, 804
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 5 cut(s) 152, 593, 816, 936, 948
FokI GGATG 2 cut(s) 422, 473
FriOI GRGCYC 2 cut(s) 111, 376
Fsp4HI GCNGC 5 cut(s) 152, 593, 816, 936, 948
FspBI CTAG 1 cut(s) 63
GlaI GCGC 3 cut(s) 596, 598, 870
GluI GCNGC 5 cut(s) 152, 593, 816, 936, 948
GsuI CTGGAG 1 cut(s) 564
HaeII RGCGCY 1 cut(s) 872
HaeIII GGCC 2 cut(s) 830, 884
HapII CCGG 2 cut(s) 551, 885
HhaI GCGC 3 cut(s) 597, 599, 871
Hin1II CATG 2 cut(s) 244, 808
Hin6I GCGC 3 cut(s) 595, 597, 869
HinP1I GCGC 3 cut(s) 595, 597, 869
HincII GTYRAC 1 cut(s) 748
HindII GTYRAC 1 cut(s) 748
HindIII AAGCTT 1 cut(s) 133
HinfI GANTC 2 cut(s) 189, 437
HpaII CCGG 2 cut(s) 551, 885
HphI GGTGA 3 cut(s) 103, 301, 721
Hpy166II GTNNAC 5 cut(s) 304, 616, 689, 748, 836
Hpy188I TCNGA 4 cut(s) 446, 484, 531, 877
Hpy188III TCNNGA 4 cut(s) 174, 416, 581, 772
Hpy8I GTNNAC 5 cut(s) 304, 616, 689, 748, 836
HpyAV CCTTC 2 cut(s) 174, 862
HpyCH4III ACNGT 2 cut(s) 70, 955
HpyF10VI GCNNNNNNNGC 4 cut(s) 323, 821, 932, 944
HpyF3I CTNAG 3 cut(s) 275, 363, 507
Hsp92II CATG 2 cut(s) 244, 808
HspAI GCGC 3 cut(s) 595, 597, 869
KflI GGGWCCC 1 cut(s) 607
KpnI GGTACC 1 cut(s) 547
KroI GCCGGC 1 cut(s) 884
KroNI GCCGGC 1 cut(s) 886
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 4 cut(s) 145, 328, 558, 726
Lsp1109I GCAGC 5 cut(s) 163, 604, 802, 947, 959
LweI GCATC 1 cut(s) 935
MaeI CTAG 1 cut(s) 63
MaeIII GTNAC 3 cut(s) 256, 352, 467
MalI GATC 4 cut(s) 147, 330, 560, 728
MboI GATC 4 cut(s) 145, 328, 558, 726
MboII GAAGA 7 cut(s) 28, 110, 113, 189, 553, 566, 975
MfeI CAATTG 1 cut(s) 798
MflI RGATCY 2 cut(s) 328, 558
MhlI GDGCHC 4 cut(s) 111, 306, 376, 963
MlyI GAGTC 1 cut(s) 446
MnlI CCTC 8 cut(s) 126, 342, 372, 393, 658, 884, 907, 925
MroNI GCCGGC 1 cut(s) 884
MseI TTAA 2 cut(s) 246, 786
MslI CAYNNNNRTG 1 cut(s) 956
MspI CCGG 2 cut(s) 551, 885
MunI CAATTG 1 cut(s) 798
MvnI CGCG 1 cut(s) 597
MwoI GCNNNNNNNGC 4 cut(s) 323, 821, 932, 944
NaeI GCCGGC 1 cut(s) 886
NdeII GATC 4 cut(s) 145, 328, 558, 726
NgoMIV GCCGGC 1 cut(s) 884
NlaIII CATG 2 cut(s) 244, 808
NlaIV GGNNCC 4 cut(s) 545, 608, 609, 895
NmuCI GTSAC 1 cut(s) 352
NspI RCATGY 1 cut(s) 244
OliI CACNNNNGTG 1 cut(s) 956
PaeI GCATGC 1 cut(s) 244
PauI GCGCGC 1 cut(s) 595
PdiI GCCGGC 1 cut(s) 886
PfeI GAWTC 1 cut(s) 189
PflMI CCANNNNNTGG 1 cut(s) 572
PkrI GCNGC 5 cut(s) 153, 594, 817, 937, 949
PleI GAGTC 1 cut(s) 445
PpsI GAGTC 1 cut(s) 445
PpuMI RGGWCCY 1 cut(s) 607
Psp124BI GAGCTC 1 cut(s) 111
Psp5II RGGWCCY 1 cut(s) 607
PspN4I GGNNCC 4 cut(s) 545, 608, 609, 895
PspPI GGNCC 2 cut(s) 413, 607
PspPPI RGGWCCY 1 cut(s) 607
PstI CTGCAG 1 cut(s) 820
PstNI CAGNNNCTG 2 cut(s) 506, 953
PsuI RGATCY 2 cut(s) 328, 558
PteI GCGCGC 1 cut(s) 595
RsaI GTAC 1 cut(s) 545
RsaNI GTAC 1 cut(s) 544
RseI CAYNNNNRTG 1 cut(s) 956
SacI GAGCTC 1 cut(s) 111
SaqAI TTAA 2 cut(s) 246, 786
SatI GCNGC 5 cut(s) 152, 593, 816, 936, 948
Sau3AI GATC 4 cut(s) 145, 328, 558, 726
Sau96I GGNCC 2 cut(s) 413, 607
SchI GAGTC 1 cut(s) 446
SduI GDGCHC 4 cut(s) 111, 306, 376, 963
SetI ASST 9 cut(s) 111, 137, 156, 185, 291, 404, 826, 895, 940
SfaNI GCATC 1 cut(s) 935
SfcI CTRYAG 3 cut(s) 451, 647, 816
SinI GGWCC 2 cut(s) 413, 607
SmiMI CAYNNNNRTG 1 cut(s) 956
SphI GCATGC 1 cut(s) 244
SsiI CCGC 1 cut(s) 888
SspI AATATT 1 cut(s) 626
SspMI CTAG 1 cut(s) 63
SstI GAGCTC 1 cut(s) 111
TaaI ACNGT 2 cut(s) 70, 955
TaqI TCGA 3 cut(s) 187, 435, 905
TfiI GAWTC 1 cut(s) 189
Tru1I TTAA 2 cut(s) 246, 786
Tru9I TTAA 2 cut(s) 246, 786
TscAI CASTG 3 cut(s) 736, 799, 958
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 5 cut(s) 151, 592, 815, 935, 947
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 3 cut(s) 844, 924, 958
TspRI CASTG 3 cut(s) 736, 799, 958
Van91I CCANNNNNTGG 1 cut(s) 572
VneI GTGCAC 1 cut(s) 302
VpaK11BI GGWCC 2 cut(s) 413, 607
XagI CCTNNNNNAGG 1 cut(s) 284
XapI RAATTY 4 cut(s) 97, 476, 485, 965
XceI RCATGY 1 cut(s) 244
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.