Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0000829

Physical Location & Seq

Genomic Coordinates Reverse (-)

6647827 .. 6649281

Gene Structure 1455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1095200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGTGCAGAGATATGGACAAGGGCCAGAAAACGAGCTACCCCTTGAAGCAAGCGGAGACTACACCAGAGAAATTGGCTACTTAAAATTTGCAAATTATACAGTCAATGCAAGCAGCTCCTCATATGACAACCTGTTAAACAATATTTGGTATCAACCGGAGGAAGTCTTTCCGATAGATGGAACTCCAGAGGAAAGACAACATGCCTTTTGGGTTCCTGTTGATCCCCTTTACTATAACATCTCTAAAAAATTGGAGGACCTGAAATTGGAAGGCTGCCTGAACTCGACGACATGTTTGTCCCATACACCAAAAGTGGCAAGAGTTGATAGGGGAACAAGTGCAAGCATTTATCTAGACAATGCTGCTTACAGAGGCTTCATATACAACAAATTCAACGTCAGCCCTGTGGAAATGGAAAGTGCTTCTGTTGCCTTGATATGTCTTCAGCAAAGGGTGCCCTTCATTGTCATCAGGGCTATCTCCGACTTGGCCGGCGGCGGCGGCGCCGATTCGAATGAGGCCGACGCATTCTTAACTCTCGCTTCCAAAAACTCAGTCACTGCTGTTTTGGAATTTGTCAAGCAGTTATCAGCTTCAAAGGAATTTGTCAAGCAGTTATCAGCTTCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNP_UDP_1

Protein Analysis

212

Amino Acids

23.34

Weight (kDa)

5.02

Isoelectric Point (pI)

37.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PNP_UDP_1	PF01048	78 - 195	4.7e-13	Phosphorylase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28940 AT4G28940
fragaria_vesca	FvH4_1g05530 FvH4_2g35741 FvH4_2g35750 FvH4_2g35760 FvH4_2g35761 FvH4_2g35762
malus_domestica	MD15G1095100.v1.1 MD15G1095200.v1.1 MD15G1095300.v1.1 MD15G1191300.v1.1
prunus_persica	Prupe.1G450100_v2.0.a1 Prupe.1G450200_v2.0.a1 Prupe.7G225900_v2.0.a1 Prupe.7G225900_v2.0.a1 Prupe.7G225900_v2.0.a1
pyrus_communis	pycom15g08760 pycom15g08770 pycom15g17130
rosa_chinensis	RchiOBHm_Chr1g0336711 RchiOBHm_Chr2g0091231 RchiOBHm_Chr6g0259261 RchiOBHm_Chr6g0259271 RchiOBHm_Chr6g0306011 RchiOBHm_Chr6g0306021
rosa_laevigata	RLG00000010830 RLG00000010831 RLG00000010832 RLG00000014544 RLG00000016193 RLG00000029340
rosa_multiflora	Rmu_sc0002270.1_g000016 Rmu_sc0011974.1_g000004 Rmu_sc0020534.1_g000001 Rmu_sc0035114.1_g000001 Rmu_sc0036553.1_g000001 Rmu_ssc0000050.1_g000090
rosa_roxburghii	Rroxscaffold_2G00150370 Rroxscaffold_7G00162110 Rroxscaffold_7G00162130
rosa_rugosa	Rorug02G0014600 Rorug06G0346400 Rorug06G0346600
rosa_samantha	Rh2AG060400 Rh2BG059100 Rh2CG060900 Rh2DG059700 Rh6AG103200 Rh6AG458200 Rh6AG458400 Rh6BG095600 Rh6BG442400 Rh6BG442500 Rh6BG442600 Rh6BG442700 Rh6CG092500 Rh6CG472700 Rh6CG472800 Rh6CG472900 Rh6DG086500 Rh6DG458800 Rh6DG459000 Rh6DG459100
rosa_wichuraiana	Rw2G004950 Rw6G008910 Rw6G039960 Rw6G039970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	298
AccB1I	GGYRCC	2 cut(s)	457, 506
AciI	CCGC	4 cut(s)	54, 498, 501, 504
AclWI	GGATC	1 cut(s)	218
AcoI	YGGCCR	1 cut(s)	492
AcsI	RAATTY	4 cut(s)	86, 392, 575, 605
AcuI	CTGAAG	1 cut(s)	431
AcyI	GRCGYC	1 cut(s)	507
AfiI	CCNNNNNNNGG	2 cut(s)	179, 268
AflIII	ACRYGT	1 cut(s)	293
AgsI	TTSAA	4 cut(s)	47, 397, 600, 630
AluBI	AGCT	4 cut(s)	37, 117, 596, 626
AluI	AGCT	4 cut(s)	37, 117, 596, 626
Alw26I	GTCTC	1 cut(s)	51
AlwI	GGATC	1 cut(s)	218
AlwNI	CAGNNNCTG	1 cut(s)	563
AoxI	GGCC	3 cut(s)	23, 492, 522
ApeKI	GCWGC	3 cut(s)	114, 276, 365
ApoI	RAATTY	4 cut(s)	86, 392, 575, 605
ArsI	GACNNNNNNTTYG	6 cut(s)	280, 312, 384, 416, 543, 575
Asp700I	GAANNNNTTC	1 cut(s)	168
AspLEI	GCGC	1 cut(s)	509
AspS9I	GGNCC	2 cut(s)	23, 259
AsuII	TTCGAA	1 cut(s)	515
AvaII	GGWCC	1 cut(s)	259
BaeGI	GKGCMC	1 cut(s)	462
BanI	GGYRCC	2 cut(s)	457, 506
BbsI	GAAGAC	1 cut(s)	437
BbvI	GCAGC	3 cut(s)	126, 263, 352
BccI	CCATC	1 cut(s)	173
BcoDI	GTCTC	1 cut(s)	51
BfaI	CTAG	1 cut(s)	356
BfoI	RGCGCY	1 cut(s)	510
BisI	GCNGC	6 cut(s)	115, 277, 366, 499, 502, 505
BlsI	GCNGC	6 cut(s)	116, 278, 367, 500, 503, 506
Bme18I	GGWCC	1 cut(s)	259
BmgT120I	GGNCC	2 cut(s)	23, 259
BmiI	GGNNCC	3 cut(s)	216, 459, 508
BpiI	GAAGAC	1 cut(s)	437
BpmI	CTGGAG	1 cut(s)	171
Bpu14I	TTCGAA	1 cut(s)	515
BsaHI	GRCGYC	1 cut(s)	507
BsaWI	WCCGGW	1 cut(s)	157
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 268
Bse118I	RCCGGY	1 cut(s)	494
BseLI	CCNNNNNNNGG	2 cut(s)	179, 268
BseMII	CTCAG	1 cut(s)	570
BseRI	GAGGAG	1 cut(s)	109
BseSI	GKGCMC	1 cut(s)	462
BseXI	GCAGC	3 cut(s)	126, 263, 352
BsgI	GTGCAG	1 cut(s)	26
BshFI	GGCC	3 cut(s)	25, 494, 524
BshNI	GGYRCC	2 cut(s)	457, 506
BsiSI	CCGG	2 cut(s)	158, 495
BslFI	GGGAC	1 cut(s)	286
BslI	CCNNNNNNNGG	2 cut(s)	179, 268
BsmAI	GTCTC	1 cut(s)	51
BsmFI	GGGAC	1 cut(s)	286
BsmI	GAATGC	1 cut(s)	530
BsnI	GGCC	3 cut(s)	25, 494, 524
Bsp119I	TTCGAA	1 cut(s)	515
Bsp1286I	GDGCHC	1 cut(s)	462
Bsp143I	GATC	1 cut(s)	223
BspACI	CCGC	4 cut(s)	54, 498, 501, 504
BspANI	GGCC	3 cut(s)	25, 494, 524
BspCNI	CTCAG	1 cut(s)	569
BspLI	GGNNCC	3 cut(s)	216, 459, 508
BspPI	GGATC	1 cut(s)	218
BspT104I	TTCGAA	1 cut(s)	515
BspT107I	GGYRCC	2 cut(s)	457, 506
BsrFI	RCCGGY	1 cut(s)	494
BssAI	RCCGGY	1 cut(s)	494
BssMI	GATC	1 cut(s)	223
BssNI	GRCGYC	1 cut(s)	507
Bst4CI	ACNGT	1 cut(s)	103
BstACI	GRCGYC	1 cut(s)	507
BstAPI	GCANNNNNTGC	1 cut(s)	457
BstBI	TTCGAA	1 cut(s)	515
BstC8I	GCNNGC	4 cut(s)	52, 112, 346, 496
BstDEI	CTNAG	1 cut(s)	556
BstH2I	RGCGCY	1 cut(s)	510
BstHHI	GCGC	1 cut(s)	509
BstKTI	GATC	1 cut(s)	226
BstMAI	GTCTC	1 cut(s)	51
BstMBI	GATC	1 cut(s)	223
BstMWI	GCNNNNNNNGC	3 cut(s)	431, 457, 504
BstNSI	RCATGY	2 cut(s)	206, 297
BstSLI	GKGCMC	1 cut(s)	462
BstV1I	GCAGC	3 cut(s)	126, 263, 352
BstV2I	GAAGAC	1 cut(s)	437
BsuRI	GGCC	3 cut(s)	25, 494, 524
BtsI	GCAGTG	1 cut(s)	561
BtsIMutI	CAGTG	1 cut(s)	561
Cac8I	GCNNGC	4 cut(s)	52, 112, 346, 496
CaiI	CAGNNNCTG	1 cut(s)	563
CfoI	GCGC	1 cut(s)	509
Cfr10I	RCCGGY	1 cut(s)	494
Cfr13I	GGNCC	2 cut(s)	23, 259
CseI	GACGC	1 cut(s)	536
CviAII	CATG	2 cut(s)	203, 294
DdeI	CTNAG	1 cut(s)	556
DinI	GGCGCC	1 cut(s)	508
DpnI	GATC	1 cut(s)	225
DpnII	GATC	1 cut(s)	223
DrdI	GACNNNNNNGTC	1 cut(s)	298
DseDI	GACNNNNNNGTC	1 cut(s)	298
EaeI	YGGCCR	1 cut(s)	492
Eco47I	GGWCC	1 cut(s)	259
Eco57I	CTGAAG	1 cut(s)	431
EcoO109I	RGGNCCY	1 cut(s)	259
EgeI	GGCGCC	1 cut(s)	508
EheI	GGCGCC	1 cut(s)	508
FaeI	CATG	2 cut(s)	206, 297
FaqI	GGGAC	1 cut(s)	286
FatI	CATG	2 cut(s)	202, 293
FauNDI	CATATG	1 cut(s)	124
Fnu4HI	GCNGC	6 cut(s)	115, 277, 366, 499, 502, 505
Fsp4HI	GCNGC	6 cut(s)	115, 277, 366, 499, 502, 505
FspBI	CTAG	1 cut(s)	356
GlaI	GCGC	1 cut(s)	508
GluI	GCNGC	6 cut(s)	115, 277, 366, 499, 502, 505
GsuI	CTGGAG	1 cut(s)	171
HaeII	RGCGCY	1 cut(s)	510
HaeIII	GGCC	3 cut(s)	25, 494, 524
HapII	CCGG	2 cut(s)	158, 495
HgaI	GACGC	1 cut(s)	536
HhaI	GCGC	1 cut(s)	509
Hin1I	GRCGYC	1 cut(s)	507
Hin1II	CATG	2 cut(s)	206, 297
Hin6I	GCGC	1 cut(s)	507
HinP1I	GCGC	1 cut(s)	507
HinfI	GANTC	1 cut(s)	512
HpaII	CCGG	2 cut(s)	158, 495
Hpy188I	TCNGA	2 cut(s)	174, 487
Hpy188III	TCNNGA	2 cut(s)	188, 356
Hpy99I	CGWCG	2 cut(s)	292, 530
HpyAV	CCTTC	2 cut(s)	266, 472
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4IV	ACGT	1 cut(s)	399
HpyCH4V	TGCA	4 cut(s)	7, 92, 110, 344
HpyF10VI	GCNNNNNNNGC	3 cut(s)	431, 457, 504
HpyF3I	CTNAG	1 cut(s)	556
HpySE526I	ACGT	1 cut(s)	399
Hsp92I	GRCGYC	1 cut(s)	507
Hsp92II	CATG	2 cut(s)	206, 297
HspAI	GCGC	1 cut(s)	507
KasI	GGCGCC	1 cut(s)	506
KroI	GCCGGC	1 cut(s)	494
KroNI	GCCGGC	1 cut(s)	496
Kzo9I	GATC	1 cut(s)	223
LmnI	GCTCC	1 cut(s)	122
Lsp1109I	GCAGC	3 cut(s)	126, 263, 352
MaeI	CTAG	1 cut(s)	356
MaeII	ACGT	1 cut(s)	399
MaeIII	GTNAC	1 cut(s)	559
MalI	GATC	1 cut(s)	225
MboI	GATC	1 cut(s)	223
MboII	GAAGA	1 cut(s)	437
MhlI	GDGCHC	1 cut(s)	462
MluCI	AATT	8 cut(s)	72, 86, 94, 251, 266, 392, 575, 605
Mly113I	GGCGCC	1 cut(s)	507
MmeI	TCCRAC	1 cut(s)	510
MnlI	CCTC	6 cut(s)	130, 154, 184, 250, 368, 514
MroNI	GCCGGC	1 cut(s)	494
MroXI	GAANNNNTTC	1 cut(s)	168
MseI	TTAA	3 cut(s)	83, 137, 536
MspI	CCGG	2 cut(s)	158, 495
Mva1269I	GAATGC	1 cut(s)	530
MwoI	GCNNNNNNNGC	3 cut(s)	431, 457, 504
NaeI	GCCGGC	1 cut(s)	496
NarI	GGCGCC	1 cut(s)	507
NdeI	CATATG	1 cut(s)	124
NdeII	GATC	1 cut(s)	223
NgoMIV	GCCGGC	1 cut(s)	494
NlaIII	CATG	2 cut(s)	206, 297
NlaIV	GGNNCC	3 cut(s)	216, 459, 508
NmuCI	GTSAC	1 cut(s)	559
NspI	RCATGY	2 cut(s)	206, 297
NspV	TTCGAA	1 cut(s)	515
PciI	ACATGT	1 cut(s)	293
PctI	GAATGC	1 cut(s)	530
PdiI	GCCGGC	1 cut(s)	496
PdmI	GAANNNNTTC	1 cut(s)	168
PfeI	GAWTC	1 cut(s)	512
PkrI	GCNGC	6 cut(s)	116, 278, 367, 500, 503, 506
PluTI	GGCGCC	1 cut(s)	510
PpuMI	RGGWCCY	1 cut(s)	259
PscI	ACATGT	1 cut(s)	293
Psp5II	RGGWCCY	1 cut(s)	259
PspN4I	GGNNCC	3 cut(s)	216, 459, 508
PspPI	GGNCC	2 cut(s)	23, 259
PspPPI	RGGWCCY	1 cut(s)	259
PstNI	CAGNNNCTG	1 cut(s)	563
SaqAI	TTAA	3 cut(s)	83, 137, 536
SatI	GCNGC	6 cut(s)	115, 277, 366, 499, 502, 505
Sau3AI	GATC	1 cut(s)	223
Sau96I	GGNCC	2 cut(s)	23, 259
SduI	GDGCHC	1 cut(s)	462
SetI	ASST	7 cut(s)	39, 119, 135, 264, 402, 598, 628
SfoI	GGCGCC	1 cut(s)	508
SfuI	TTCGAA	1 cut(s)	515
SinI	GGWCC	1 cut(s)	259
Sse9I	AATT	8 cut(s)	72, 86, 94, 251, 266, 392, 575, 605
SsiI	CCGC	4 cut(s)	54, 498, 501, 504
SspDI	GGCGCC	1 cut(s)	506
SspI	AATATT	1 cut(s)	145
SspMI	CTAG	1 cut(s)	356
TaaI	ACNGT	1 cut(s)	103
TaiI	ACGT	1 cut(s)	402
TaqI	TCGA	2 cut(s)	287, 515
TasI	AATT	8 cut(s)	72, 86, 94, 251, 266, 392, 575, 605
TauI	GCSGC	3 cut(s)	501, 504, 507
TfiI	GAWTC	1 cut(s)	512
Tru1I	TTAA	3 cut(s)	83, 137, 536
Tru9I	TTAA	3 cut(s)	83, 137, 536
TscAI	CASTG	1 cut(s)	568
TseFI	GTSAC	1 cut(s)	559
TseI	GCWGC	3 cut(s)	114, 276, 365
Tsp45I	GTSAC	1 cut(s)	559
TspDTI	ATGAA	2 cut(s)	370, 454
TspRI	CASTG	1 cut(s)	568
VpaK11BI	GGWCC	1 cut(s)	259
XapI	RAATTY	4 cut(s)	86, 392, 575, 605
XbaI	TCTAGA	1 cut(s)	355
XceI	RCATGY	2 cut(s)	206, 297
XmnI	GAANNNNTTC	1 cut(s)	168
XspI	CTAG	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.