RLG00000010832
ERF Family

Phosphorylase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000829
Physical Location & Seq
Reverse (-)
4649881 .. 4652701
2821 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010832

Sequence Viewer

Length: 921 bp
ATGAGGGTGGCTTGGCCTTGTTTAGTTGTTTATGCTATGAGCATCGTAGTAGTGCAGGCTGCACTCTCAGTAGAGACGTTGAAATTGATCGAAGAGACCAGCGATCGAGGCCCTTATTTAGGGTTGGTCATTCCTAATTCTTTCGAAATGAACCCTCTTCTTCAATCTCCAGATTTCATTTCAGCTAACCTGAATACAGATTTTTCTGGACGGAGATTTCGGTTTGGAACAATTTCTGAAAAGAAAATCGTATTAGTCATGACAGGACTCTCCATGATTAATGCAGGAATAACCACTCAGCTCTTACTAAGCCTGTTCGATATAGAAGGAGTGGTGCATTGTGGCATAGCTGGCAATGTAAACCTTGATCTCCATCTTGCAGATGTGGTCATTCCTCAGTACTGGGCGCATACCGCTCTTTGGAACTGGCAGAGATATGGAAATGGGCTGGAAAATGATCTACCCCTTGAATCACAAGGAGACTACACCAGAGAAATTGGCTACTTAAAACTTGCAAACTATACAATCAACGTGACAGACTCATCCGACAACCTGTTGAGCAACATTTGGTATCAACCGGAGGAAGTCTTCCCCGTCAATGGAACTCCAGAACATAGAGAGCATGCCTTTTGGGTCCCTGTTGATCCCTTCTACTATGAAATTTCCCAGAAGCTAGAGCAAAAGGTGTCTTTCATTGTCATCAGGGCTCTCTCTGACTTGGCCGGCGGTGGCTCTGCGAATTCGAATGAGGCTGATACTTTCATCGCTCTTGCTTCCAATAATTCAGTCACAAGATATGGAAATGGGCCTGAAGTTGAACTTCCCCTTGAATCACAAGGAGACTACACCAGAGACATTGGCTATTTGAAGTTTGCAAATTACACGGTGAATGTGAAAGAAGCTCATATGACAACTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNP_UDP_1

Protein Analysis

307

Amino Acids

34.13

Weight (kDa)

4.68

Isoelectric Point (pI)

25.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNP_UDP_1 PF01048 40 - 137 2.5e-15 Phosphorylase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 416
AciI CCGC 2 cut(s) 414, 726
AclWI GGATC 1 cut(s) 638
AcoI YGGCCR 1 cut(s) 720
AcsI RAATTY 2 cut(s) 660, 739
AcuI CTGAAG 1 cut(s) 831
AfaI GTAC 1 cut(s) 401
AfiI CCNNNNNNNGG 3 cut(s) 119, 420, 599
AgsI TTSAA 6 cut(s) 82, 164, 470, 818, 830, 868
AluBI AGCT 5 cut(s) 185, 301, 350, 673, 902
AluI AGCT 5 cut(s) 185, 301, 350, 673, 902
Alw26I GTCTC 5 cut(s) 68, 89, 474, 834, 846
AlwI GGATC 1 cut(s) 638
AoxI GGCC 4 cut(s) 14, 109, 720, 806
ApeKI GCWGC 1 cut(s) 59
ApoI RAATTY 2 cut(s) 660, 739
ArsI GACNNNNNNTTYG 2 cut(s) 201, 233
AseI ATTAAT 1 cut(s) 279
Asp700I GAANNNNTTC 1 cut(s) 232
AspLEI GCGC 1 cut(s) 409
AspS9I GGNCC 3 cut(s) 110, 634, 806
AsuHPI GGTGA 1 cut(s) 898
AsuII TTCGAA 2 cut(s) 144, 743
AvaII GGWCC 1 cut(s) 634
BanII GRGCYC 1 cut(s) 709
BbsI GAAGAC 1 cut(s) 580
BbvI GCAGC 1 cut(s) 46
BccI CCATC 1 cut(s) 381
BcoDI GTCTC 5 cut(s) 68, 89, 474, 834, 846
BfaI CTAG 1 cut(s) 674
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
BmcAI AGTACT 1 cut(s) 401
Bme18I GGWCC 1 cut(s) 634
BmgT120I GGNCC 3 cut(s) 110, 634, 806
BmiI GGNNCC 2 cut(s) 635, 636
BmrI ACTGGG 1 cut(s) 412
BmsI GCATC 1 cut(s) 51
BmuI ACTGGG 1 cut(s) 412
BpiI GAAGAC 1 cut(s) 580
BpmI CTGGAG 2 cut(s) 153, 591
Bpu14I TTCGAA 2 cut(s) 144, 743
BsaBI GATNNNNATC 1 cut(s) 372
BsaI GGTCTC 1 cut(s) 89
BsaWI WCCGGW 1 cut(s) 577
Bsc4I CCNNNNNNNGG 3 cut(s) 119, 420, 599
Bse118I RCCGGY 1 cut(s) 722
Bse1I ACTGG 2 cut(s) 407, 431
Bse3DI GCAATG 1 cut(s) 361
Bse8I GATNNNNATC 1 cut(s) 372
BseGI GGATG 1 cut(s) 542
BseJI GATNNNNATC 1 cut(s) 372
BseLI CCNNNNNNNGG 3 cut(s) 119, 420, 599
BseMI GCAATG 1 cut(s) 361
BseMII CTCAG 3 cut(s) 81, 311, 410
BseNI ACTGG 2 cut(s) 407, 431
BseXI GCAGC 1 cut(s) 46
BsgI GTGCAG 2 cut(s) 45, 74
Bsh1285I CGRYCG 1 cut(s) 106
BshFI GGCC 4 cut(s) 16, 111, 722, 808
BsiEI CGRYCG 1 cut(s) 106
BsiSI CCGG 2 cut(s) 578, 723
BslFI GGGAC 1 cut(s) 620
BslI CCNNNNNNNGG 3 cut(s) 119, 420, 599
BsmAI GTCTC 5 cut(s) 68, 89, 474, 834, 846
BsmBI CGTCTC 1 cut(s) 68
BsmFI GGGAC 1 cut(s) 620
BsnI GGCC 4 cut(s) 16, 111, 722, 808
Bso31I GGTCTC 1 cut(s) 89
Bsp119I TTCGAA 2 cut(s) 144, 743
Bsp1286I GDGCHC 1 cut(s) 709
Bsp143I GATC 5 cut(s) 87, 103, 367, 457, 643
BspACI CCGC 2 cut(s) 414, 726
BspANI GGCC 4 cut(s) 16, 111, 722, 808
BspCNI CTCAG 3 cut(s) 80, 310, 409
BspHI TCATGA 1 cut(s) 258
BspLI GGNNCC 2 cut(s) 635, 636
BspPI GGATC 1 cut(s) 638
BspT104I TTCGAA 2 cut(s) 144, 743
BspTNI GGTCTC 1 cut(s) 89
BsrBI CCGCTC 1 cut(s) 416
BsrDI GCAATG 1 cut(s) 361
BsrFI RCCGGY 1 cut(s) 722
BsrI ACTGG 2 cut(s) 407, 431
BssAI RCCGGY 1 cut(s) 722
BssMI GATC 5 cut(s) 87, 103, 367, 457, 643
Bst4CI ACNGT 1 cut(s) 886
Bst6I CTCTTC 2 cut(s) 87, 162
BstBI TTCGAA 2 cut(s) 144, 743
BstC8I GCNNGC 4 cut(s) 57, 352, 624, 724
BstDEI CTNAG 4 cut(s) 67, 297, 308, 396
BstENI CCTNNNNNAGG 1 cut(s) 117
BstF5I GGATG 1 cut(s) 542
BstHHI GCGC 1 cut(s) 409
BstKTI GATC 5 cut(s) 90, 106, 370, 460, 646
BstMAI GTCTC 5 cut(s) 68, 89, 474, 834, 846
BstMBI GATC 5 cut(s) 87, 103, 367, 457, 643
BstMCI CGRYCG 1 cut(s) 106
BstMWI GCNNNNNNNGC 3 cut(s) 108, 351, 413
BstNSI RCATGY 1 cut(s) 626
BstV1I GCAGC 1 cut(s) 46
BstV2I GAAGAC 1 cut(s) 580
BsuRI GGCC 4 cut(s) 16, 111, 722, 808
BtgZI GCGATG 1 cut(s) 748
BtsCI GGATG 1 cut(s) 542
Cac8I GCNNGC 4 cut(s) 57, 352, 624, 724
CciI TCATGA 1 cut(s) 258
CfoI GCGC 1 cut(s) 409
Cfr10I RCCGGY 1 cut(s) 722
Cfr13I GGNCC 3 cut(s) 110, 634, 806
Csp6I GTAC 1 cut(s) 400
CviAII CATG 3 cut(s) 259, 274, 623
CviQI GTAC 1 cut(s) 400
DdeI CTNAG 4 cut(s) 67, 297, 308, 396
DpnI GATC 5 cut(s) 89, 105, 369, 459, 645
DpnII GATC 5 cut(s) 87, 103, 367, 457, 643
EaeI YGGCCR 1 cut(s) 720
Eam1104I CTCTTC 2 cut(s) 87, 162
EarI CTCTTC 2 cut(s) 87, 162
Eco24I GRGCYC 1 cut(s) 709
Eco31I GGTCTC 1 cut(s) 89
Eco47I GGWCC 1 cut(s) 634
Eco57I CTGAAG 1 cut(s) 831
EcoNI CCTNNNNNAGG 1 cut(s) 117
EcoO109I RGGNCCY 2 cut(s) 110, 634
EcoRI GAATTC 1 cut(s) 739
EcoT38I GRGCYC 1 cut(s) 709
Esp3I CGTCTC 1 cut(s) 68
FaeI CATG 3 cut(s) 262, 277, 626
FalI AAGNNNNNCTT 2 cut(s) 804, 836
FaqI GGGAC 1 cut(s) 620
FatI CATG 3 cut(s) 258, 273, 622
FauNDI CATATG 1 cut(s) 906
Fnu4HI GCNGC 1 cut(s) 60
FokI GGATG 1 cut(s) 529
FriOI GRGCYC 1 cut(s) 709
Fsp4HI GCNGC 1 cut(s) 60
FspBI CTAG 1 cut(s) 674
GlaI GCGC 1 cut(s) 408
GluI GCNGC 1 cut(s) 60
GsuI CTGGAG 2 cut(s) 153, 591
HaeIII GGCC 4 cut(s) 16, 111, 722, 808
HapII CCGG 2 cut(s) 578, 723
HhaI GCGC 1 cut(s) 409
Hin1II CATG 3 cut(s) 262, 277, 626
Hin6I GCGC 1 cut(s) 407
HinP1I GCGC 1 cut(s) 407
HinfI GANTC 4 cut(s) 267, 470, 539, 830
HpaII CCGG 2 cut(s) 578, 723
HphI GGTGA 1 cut(s) 898
Hpy166II GTNNAC 1 cut(s) 361
Hpy188I TCNGA 3 cut(s) 238, 547, 715
Hpy188III TCNNGA 4 cut(s) 170, 207, 259, 608
Hpy8I GTNNAC 1 cut(s) 361
HpyAV CCTTC 2 cut(s) 320, 658
HpyCH4III ACNGT 1 cut(s) 886
HpyCH4IV ACGT 2 cut(s) 77, 531
HpyCH4V TGCA 7 cut(s) 55, 62, 284, 337, 380, 515, 875
HpyF10VI GCNNNNNNNGC 3 cut(s) 108, 351, 413
HpyF3I CTNAG 4 cut(s) 67, 297, 308, 396
HpySE526I ACGT 2 cut(s) 77, 531
Hsp92II CATG 3 cut(s) 262, 277, 626
HspAI GCGC 1 cut(s) 407
KflI GGGWCCC 1 cut(s) 634
KroI GCCGGC 1 cut(s) 722
KroNI GCCGGC 1 cut(s) 724
Kzo9I GATC 5 cut(s) 87, 103, 367, 457, 643
Lsp1109I GCAGC 1 cut(s) 46
LweI GCATC 1 cut(s) 51
MaeI CTAG 1 cut(s) 674
MaeII ACGT 2 cut(s) 77, 531
MaeIII GTNAC 2 cut(s) 532, 787
MalI GATC 5 cut(s) 89, 105, 369, 459, 645
MbiI CCGCTC 1 cut(s) 416
MboI GATC 5 cut(s) 87, 103, 367, 457, 643
MboII GAAGA 4 cut(s) 104, 149, 152, 580
MhlI GDGCHC 1 cut(s) 709
MluCI AATT 8 cut(s) 83, 136, 231, 495, 660, 739, 781, 877
MlyI GAGTC 2 cut(s) 261, 533
MmeI TCCRAC 1 cut(s) 570
MnlI CCTC 5 cut(s) 101, 165, 405, 574, 742
MroNI GCCGGC 1 cut(s) 722
MroXI GAANNNNTTC 1 cut(s) 232
MseI TTAA 2 cut(s) 279, 506
MspI CCGG 2 cut(s) 578, 723
MwoI GCNNNNNNNGC 3 cut(s) 108, 351, 413
NaeI GCCGGC 1 cut(s) 724
NdeI CATATG 1 cut(s) 906
NdeII GATC 5 cut(s) 87, 103, 367, 457, 643
NgoMIV GCCGGC 1 cut(s) 722
NlaIII CATG 3 cut(s) 262, 277, 626
NlaIV GGNNCC 2 cut(s) 635, 636
NmuCI GTSAC 2 cut(s) 532, 787
NspI RCATGY 1 cut(s) 626
NspV TTCGAA 2 cut(s) 144, 743
PaeI GCATGC 1 cut(s) 626
PagI TCATGA 1 cut(s) 258
PdiI GCCGGC 1 cut(s) 724
PdmI GAANNNNTTC 1 cut(s) 232
PfeI GAWTC 2 cut(s) 470, 830
PkrI GCNGC 1 cut(s) 61
Ple19I CGATCG 1 cut(s) 106
PleI GAGTC 2 cut(s) 261, 533
PpsI GAGTC 2 cut(s) 261, 533
PpuMI RGGWCCY 1 cut(s) 634
PshBI ATTAAT 1 cut(s) 279
Psp5II RGGWCCY 1 cut(s) 634
PspN4I GGNNCC 2 cut(s) 635, 636
PspPI GGNCC 3 cut(s) 110, 634, 806
PspPPI RGGWCCY 1 cut(s) 634
PvuI CGATCG 1 cut(s) 106
RsaI GTAC 1 cut(s) 401
RsaNI GTAC 1 cut(s) 400
SaqAI TTAA 2 cut(s) 279, 506
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 5 cut(s) 87, 103, 367, 457, 643
Sau96I GGNCC 3 cut(s) 110, 634, 806
ScaI AGTACT 1 cut(s) 401
SchI GAGTC 2 cut(s) 261, 533
SduI GDGCHC 1 cut(s) 709
SfaNI GCATC 1 cut(s) 51
SfuI TTCGAA 2 cut(s) 144, 743
SinI GGWCC 1 cut(s) 634
SphI GCATGC 1 cut(s) 626
Sse9I AATT 8 cut(s) 83, 136, 231, 495, 660, 739, 781, 877
SsiI CCGC 2 cut(s) 414, 726
SspMI CTAG 1 cut(s) 674
TaaI ACNGT 1 cut(s) 886
TaiI ACGT 2 cut(s) 80, 534
TaqI TCGA 5 cut(s) 90, 106, 144, 318, 743
TasI AATT 8 cut(s) 83, 136, 231, 495, 660, 739, 781, 877
TatI WGTACW 1 cut(s) 399
TfiI GAWTC 2 cut(s) 470, 830
Tru1I TTAA 2 cut(s) 279, 506
Tru9I TTAA 2 cut(s) 279, 506
TseFI GTSAC 2 cut(s) 532, 787
TseI GCWGC 1 cut(s) 59
Tsp45I GTSAC 2 cut(s) 532, 787
TspDTI ATGAA 5 cut(s) 164, 166, 672, 682, 751
TspGWI ACGGA 1 cut(s) 226
VpaK11BI GGWCC 1 cut(s) 634
VspI ATTAAT 1 cut(s) 279
XagI CCTNNNNNAGG 1 cut(s) 117
XapI RAATTY 2 cut(s) 660, 739
XceI RCATGY 1 cut(s) 626
XmnI GAANNNNTTC 1 cut(s) 232
XspI CTAG 1 cut(s) 674
ZrmI AGTACT 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.