RLG00000010831
ERF Family

Phosphorylase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000829
Physical Location & Seq
Reverse (-)
4643441 .. 4645768
2328 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010831

Sequence Viewer

Length: 1065 bp
ATGGGAAGTTGGACTCTCCTATGTGCTATCTTGGCTCTTATCACAACCCAACAACACTACTCAAATGCTGCCTTGTTGCCGGAGACACTCAAGTTGATAGAAGCGGCCAACGCCGATGGACCTTATTTAGGGTTGGTCATTCCAAACACTTACGAATTGAACCCTCTTCTTCGATCTCCAAACTTCACCTCAACTGACTTGATCATTGACTTTTCTGGAAGAAGATTCAGGTTTGGAACCATTGCTACAAAGAAAGTCATATTAGTTATGACAGGACTGGGAATGATTAATGCAGGAATAACCACTCAGCTTTTACTAAGCATGTTCAGTGTAGAAGGAGTGGTGCATTATGGCACAGCTGGCAATGCGAATCCAACCTTCAACCTTGCAGATGTGGTCATTCCTCGGTATTGGTCCCATACTGCTCTTTGGACCTGGCAAAGATATGGACACGGGCCTGAAGATGATTTGCCTCTAAATTCAATGAGAGATATTGGGTGCTTGAACCTTGCAAGTTACACAGTGAATGTGACAGATGGAAGCTCATATGATAACTTGTTGAACAATATTTGGTATCAGTCAGAGGAAGTCTTCCCCATTGATGGAACTCCAGAACAAAGAGAGTTTACCTTTTGGGTCCCTGTTCATCCCTTCTACTATGAAATCTCCAAAAATCTGGAGGACCTGAAACTAGAAGGTTGCCTAAACTCAACATCATGTTTGTCACATACACCAAAAGTGGCAAGAGTCCAAAGGGGAACAAGTGCAAGCATTTACCTAGACAATGCTGCTTACCGTGACTTCATATATGATAAGTTCAAGATAACTCCGGTGGACATGGAAAGTGCTTCTGTTGCTTTGATATGCCTTCAGCAAAGGGTGCCCTTCATAGCCATCAGGGCTCTCTCTGACTTGGCCGGTGGTGGCTCTGCGGATTCCAATGAGGCTGACACATTCAATACTCTCGCTTCCCATAATTCAGCCACAGTTGTTGTTCAATTTATCAAACAGTTAGCAGCTGCTAGTTGTGCATCTATTATGTGTCCTAGTGATGATGTTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNP_UDP_1

Protein Analysis

355

Amino Acids

38.99

Weight (kDa)

4.95

Isoelectric Point (pI)

32.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNP_UDP_1 PF01048 44 - 336 8.5e-30 Phosphorylase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 880
AciI CCGC 2 cut(s) 104, 932
AcoI YGGCCR 2 cut(s) 105, 915
AcsI RAATTY 1 cut(s) 478
AcuI CTGAAG 2 cut(s) 480, 854
AfiI CCNNNNNNNGG 2 cut(s) 128, 602
AgsI TTSAA 8 cut(s) 160, 382, 483, 505, 562, 820, 958, 998
AjnI CCWGG 1 cut(s) 434
AluBI AGCT 4 cut(s) 310, 359, 543, 1019
AluI AGCT 4 cut(s) 310, 359, 543, 1019
Alw26I GTCTC 1 cut(s) 77
AoxI GGCC 3 cut(s) 105, 455, 915
ApeKI GCWGC 4 cut(s) 68, 788, 1016, 1019
ApoI RAATTY 1 cut(s) 478
AseI ATTAAT 1 cut(s) 288
AspS9I GGNCC 6 cut(s) 119, 414, 432, 455, 637, 682
AsuHPI GGTGA 1 cut(s) 178
AvaII GGWCC 5 cut(s) 119, 414, 432, 637, 682
BaeGI GKGCMC 1 cut(s) 885
BanI GGYRCC 1 cut(s) 880
BanII GRGCYC 1 cut(s) 904
BbsI GAAGAC 1 cut(s) 583
BbvI GCAGC 4 cut(s) 55, 775, 1006, 1028
BccI CCATC 4 cut(s) 110, 530, 596, 902
BciT130I CCWGG 1 cut(s) 436
BclI TGATCA 1 cut(s) 201
BcoDI GTCTC 1 cut(s) 77
BfaI CTAG 4 cut(s) 692, 779, 1023, 1047
BglI GCCNNNNNGGC 1 cut(s) 899
BisI GCNGC 5 cut(s) 69, 105, 789, 1017, 1020
BlsI GCNGC 5 cut(s) 70, 106, 790, 1018, 1021
Bme1390I CCNGG 1 cut(s) 436
Bme18I GGWCC 5 cut(s) 119, 414, 432, 637, 682
BmgT120I GGNCC 6 cut(s) 119, 414, 432, 455, 637, 682
BmiI GGNNCC 5 cut(s) 238, 416, 638, 639, 882
BmrFI CCNGG 1 cut(s) 436
BmrI ACTGGG 1 cut(s) 287
BmsI GCATC 1 cut(s) 1040
BmuI ACTGGG 1 cut(s) 287
BpiI GAAGAC 1 cut(s) 583
BpmI CTGGAG 2 cut(s) 594, 698
BpuEI CTTGAG 1 cut(s) 74
BsaJI CCNNGG 1 cut(s) 404
BsaWI WCCGGW 1 cut(s) 829
Bsc4I CCNNNNNNNGG 2 cut(s) 128, 602
Bse118I RCCGGY 1 cut(s) 917
Bse1I ACTGG 1 cut(s) 282
Bse3DI GCAATG 2 cut(s) 240, 370
BseBI CCWGG 1 cut(s) 436
BseDI CCNNGG 1 cut(s) 404
BseGI GGATG 1 cut(s) 646
BseLI CCNNNNNNNGG 2 cut(s) 128, 602
BseMI GCAATG 2 cut(s) 240, 370
BseMII CTCAG 1 cut(s) 320
BseNI ACTGG 1 cut(s) 282
BseSI GKGCMC 1 cut(s) 885
BseXI GCAGC 4 cut(s) 55, 775, 1006, 1028
BshFI GGCC 3 cut(s) 107, 457, 917
BshNI GGYRCC 1 cut(s) 880
BsiSI CCGG 3 cut(s) 80, 830, 918
BslFI GGGAC 2 cut(s) 400, 623
BslI CCNNNNNNNGG 2 cut(s) 128, 602
BsmAI GTCTC 1 cut(s) 77
BsmFI GGGAC 2 cut(s) 400, 623
BsnI GGCC 3 cut(s) 107, 457, 917
Bsp1286I GDGCHC 2 cut(s) 885, 904
Bsp143I GATC 2 cut(s) 173, 201
BspACI CCGC 2 cut(s) 104, 932
BspANI GGCC 3 cut(s) 107, 457, 917
BspCNI CTCAG 1 cut(s) 319
BspLI GGNNCC 5 cut(s) 238, 416, 638, 639, 882
BspT107I GGYRCC 1 cut(s) 880
BsrDI GCAATG 2 cut(s) 240, 370
BsrFI RCCGGY 1 cut(s) 917
BsrI ACTGG 1 cut(s) 282
BssAI RCCGGY 1 cut(s) 917
BssECI CCNNGG 1 cut(s) 404
BssMI GATC 2 cut(s) 173, 201
Bst2UI CCWGG 1 cut(s) 436
Bst4CI ACNGT 4 cut(s) 523, 797, 988, 1011
Bst6I CTCTTC 1 cut(s) 171
BstAPI GCANNNNNTGC 1 cut(s) 880
BstC8I GCNNGC 2 cut(s) 361, 769
BstDEI CTNAG 2 cut(s) 306, 317
BstENI CCTNNNNNAGG 1 cut(s) 126
BstF5I GGATG 1 cut(s) 646
BstKTI GATC 2 cut(s) 176, 204
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 2 cut(s) 173, 201
BstMWI GCNNNNNNNGC 8 cut(s) 32, 110, 360, 365, 854, 880, 899, 1028
BstNI CCWGG 1 cut(s) 436
BstNSI RCATGY 1 cut(s) 325
BstSCI CCNGG 1 cut(s) 434
BstSLI GKGCMC 1 cut(s) 885
BstV1I GCAGC 4 cut(s) 55, 775, 1006, 1028
BstV2I GAAGAC 1 cut(s) 583
BstXI CCANNNNNNTGG 1 cut(s) 676
BsuRI GGCC 3 cut(s) 107, 457, 917
BtsCI GGATG 1 cut(s) 646
BtsIMutI CAGTG 2 cut(s) 334, 528
Cac8I GCNNGC 2 cut(s) 361, 769
Cfr10I RCCGGY 1 cut(s) 917
Cfr13I GGNCC 6 cut(s) 119, 414, 432, 455, 637, 682
CspCI CAANNNNNGTGG 2 cut(s) 973, 1008
CviAII CATG 3 cut(s) 322, 717, 838
DdeI CTNAG 2 cut(s) 306, 317
DpnI GATC 2 cut(s) 175, 203
DpnII GATC 2 cut(s) 173, 201
EaeI YGGCCR 2 cut(s) 105, 915
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
Eco24I GRGCYC 1 cut(s) 904
Eco47I GGWCC 5 cut(s) 119, 414, 432, 637, 682
Eco57I CTGAAG 2 cut(s) 480, 854
EcoNI CCTNNNNNAGG 1 cut(s) 126
EcoO109I RGGNCCY 2 cut(s) 637, 682
EcoRII CCWGG 1 cut(s) 434
EcoT38I GRGCYC 1 cut(s) 904
FaeI CATG 3 cut(s) 325, 720, 841
FaqI GGGAC 2 cut(s) 400, 623
FatI CATG 3 cut(s) 321, 716, 837
FauNDI CATATG 1 cut(s) 547
FbaI TGATCA 1 cut(s) 201
Fnu4HI GCNGC 5 cut(s) 69, 105, 789, 1017, 1020
FokI GGATG 1 cut(s) 633
FriOI GRGCYC 1 cut(s) 904
Fsp4HI GCNGC 5 cut(s) 69, 105, 789, 1017, 1020
FspBI CTAG 4 cut(s) 692, 779, 1023, 1047
GluI GCNGC 5 cut(s) 69, 105, 789, 1017, 1020
GsuI CTGGAG 2 cut(s) 594, 698
HaeIII GGCC 3 cut(s) 107, 457, 917
HapII CCGG 3 cut(s) 80, 830, 918
Hin1II CATG 3 cut(s) 325, 720, 841
HinfI GANTC 5 cut(s) 13, 225, 370, 747, 935
HpaII CCGG 3 cut(s) 80, 830, 918
HphI GGTGA 1 cut(s) 178
Hpy166II GTNNAC 3 cut(s) 627, 835, 1060
Hpy188I TCNGA 2 cut(s) 583, 910
Hpy188III TCNNGA 4 cut(s) 216, 611, 677, 820
Hpy8I GTNNAC 3 cut(s) 627, 835, 1060
HpyAV CCTTC 6 cut(s) 329, 388, 661, 689, 878, 895
HpyCH4III ACNGT 4 cut(s) 523, 797, 988, 1011
HpyCH4V TGCA 6 cut(s) 293, 346, 389, 512, 767, 1031
HpyF10VI GCNNNNNNNGC 8 cut(s) 32, 110, 360, 365, 854, 880, 899, 1028
HpyF3I CTNAG 2 cut(s) 306, 317
Hsp92II CATG 3 cut(s) 325, 720, 841
KflI GGGWCCC 1 cut(s) 637
Ksp22I TGATCA 1 cut(s) 201
Kzo9I GATC 2 cut(s) 173, 201
Lsp1109I GCAGC 4 cut(s) 55, 775, 1006, 1028
LweI GCATC 1 cut(s) 1040
MaeI CTAG 4 cut(s) 692, 779, 1023, 1047
MaeIII GTNAC 4 cut(s) 515, 529, 723, 797
MalI GATC 2 cut(s) 175, 203
MboI GATC 2 cut(s) 173, 201
MboII GAAGA 6 cut(s) 158, 161, 231, 234, 473, 583
MhlI GDGCHC 2 cut(s) 885, 904
MluCI AATT 4 cut(s) 155, 478, 976, 998
MlyI GAGTC 2 cut(s) 7, 756
MmeI TCCRAC 1 cut(s) 398
MnlI CCTC 7 cut(s) 174, 199, 414, 483, 577, 673, 937
MseI TTAA 1 cut(s) 288
MspA1I CMGCKG 2 cut(s) 359, 1019
MspI CCGG 3 cut(s) 80, 830, 918
MspR9I CCNGG 1 cut(s) 436
MvaI CCWGG 1 cut(s) 436
MwoI GCNNNNNNNGC 8 cut(s) 32, 110, 360, 365, 854, 880, 899, 1028
NdeI CATATG 1 cut(s) 547
NdeII GATC 2 cut(s) 173, 201
NlaIII CATG 3 cut(s) 325, 720, 841
NlaIV GGNNCC 5 cut(s) 238, 416, 638, 639, 882
NmuCI GTSAC 3 cut(s) 529, 723, 797
NspI RCATGY 1 cut(s) 325
PfeI GAWTC 3 cut(s) 225, 370, 935
PkrI GCNGC 5 cut(s) 70, 106, 790, 1018, 1021
PleI GAGTC 2 cut(s) 7, 755
PpsI GAGTC 2 cut(s) 7, 755
PpuMI RGGWCCY 2 cut(s) 637, 682
PshBI ATTAAT 1 cut(s) 288
Psp5II RGGWCCY 2 cut(s) 637, 682
Psp6I CCWGG 1 cut(s) 434
PspGI CCWGG 1 cut(s) 434
PspN4I GGNNCC 5 cut(s) 238, 416, 638, 639, 882
PspPI GGNCC 6 cut(s) 119, 414, 432, 455, 637, 682
PspPPI RGGWCCY 2 cut(s) 637, 682
PsrI GAACNNNNNNTAC 2 cut(s) 229, 261
PvuII CAGCTG 2 cut(s) 359, 1019
SaqAI TTAA 1 cut(s) 288
SatI GCNGC 5 cut(s) 69, 105, 789, 1017, 1020
Sau3AI GATC 2 cut(s) 173, 201
Sau96I GGNCC 6 cut(s) 119, 414, 432, 455, 637, 682
SchI GAGTC 2 cut(s) 7, 756
ScrFI CCNGG 1 cut(s) 436
SduI GDGCHC 2 cut(s) 885, 904
SfaNI GCATC 1 cut(s) 1040
SinI GGWCC 5 cut(s) 119, 414, 432, 637, 682
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 4 cut(s) 155, 478, 976, 998
SsiI CCGC 2 cut(s) 104, 932
SspI AATATT 1 cut(s) 568
SspMI CTAG 4 cut(s) 692, 779, 1023, 1047
StyD4I CCNGG 1 cut(s) 434
TaaI ACNGT 4 cut(s) 523, 797, 988, 1011
TaqI TCGA 1 cut(s) 172
TasI AATT 4 cut(s) 155, 478, 976, 998
TauI GCSGC 1 cut(s) 107
TfiI GAWTC 3 cut(s) 225, 370, 935
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TscAI CASTG 2 cut(s) 334, 528
TseFI GTSAC 3 cut(s) 529, 723, 797
TseI GCWGC 4 cut(s) 68, 788, 1016, 1019
Tsp45I GTSAC 3 cut(s) 529, 723, 797
TspDTI ATGAA 4 cut(s) 635, 675, 793, 877
TspRI CASTG 2 cut(s) 334, 528
VpaK11BI GGWCC 5 cut(s) 119, 414, 432, 637, 682
VspI ATTAAT 1 cut(s) 288
XagI CCTNNNNNAGG 1 cut(s) 126
XapI RAATTY 1 cut(s) 478
XceI RCATGY 1 cut(s) 325
XspI CTAG 4 cut(s) 692, 779, 1023, 1047
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.