Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000050.1

Orthogroup ID

OG0000829

Physical Location & Seq

Genomic Coordinates Forward (+)

385273 .. 386309

Gene Structure 1037 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000050.1_g000090.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

atggagagccatttgaagatggtgttagtggttttctttgtattggttttggagattagcactagaacagttgatggtgcagtttctcaaagtaccatgaaaaagattgataggatgaataggaaaggcccatacttgggtattatagtaccaaattcctttgagctcacccctcttcttcaatctgcaagctttgtggctgatcagaagcttcccagtttggatttttcaggaagaaggtttcgattcggagtagcaactcaattattgcttaccctattcaaggtgaaaggggttgtgcactatggaattgcaggaaatgcagatcctcaactccaaattggagatgtcactatccctcagtattgggctcatacaggactttggaattggcagaggtttggggatggtcctgatgatttgttatctttggagtcattcggagactacaccagggatgttggttacataaaattttccgaattcaacaacaaaacagaaactgagaagtctgttgataattttctgaacaatgcttggtaccaaccggaagagatcttcccagtttatggcactcctgaagttcggcagcactccttttgggtccctgtaaacaaaaaatattttgctcttgctcaacaactacaggatttgaagttagagggttgtgtgaatacaacttgtttaccaagaacaccaatagtggtgagagtgcagagggagatgagtgccaatgtgtttgttgacaatagtgcatatagacaattcttgaactccaagtttaatgccactgcaattgacatggaaagtgctgcagtagctctggtctgtaagcagcataagacacccttcattgtgattagggcgctatcagatttggccgggggaggttcctctgtgtcgaatgaagcctctaccttcgcatcattggcagctcaaaatgcagtcactgtcgtgctcaaattcatttccttgttgtcttcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PNP_UDP_1

Protein Analysis

328

Amino Acids

36.58

Weight (kDa)

7.7

Isoelectric Point (pI)

30.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28940 AT4G28940
fragaria_vesca	FvH4_1g05530 FvH4_2g35741 FvH4_2g35750 FvH4_2g35760 FvH4_2g35761 FvH4_2g35762
malus_domestica	MD15G1095100.v1.1 MD15G1095200.v1.1 MD15G1095300.v1.1 MD15G1191300.v1.1
prunus_persica	Prupe.1G450100_v2.0.a1 Prupe.1G450200_v2.0.a1 Prupe.7G225900_v2.0.a1 Prupe.7G225900_v2.0.a1 Prupe.7G225900_v2.0.a1
pyrus_communis	pycom15g08760 pycom15g08770 pycom15g17130
rosa_chinensis	RchiOBHm_Chr1g0336711 RchiOBHm_Chr2g0091231 RchiOBHm_Chr6g0259261 RchiOBHm_Chr6g0259271 RchiOBHm_Chr6g0306011 RchiOBHm_Chr6g0306021
rosa_laevigata	RLG00000010830 RLG00000010831 RLG00000010832 RLG00000014544 RLG00000016193 RLG00000029340
rosa_multiflora	Rmu_sc0002270.1_g000016 Rmu_sc0011974.1_g000004 Rmu_sc0020534.1_g000001 Rmu_sc0035114.1_g000001 Rmu_sc0036553.1_g000001 Rmu_ssc0000050.1_g000090
rosa_roxburghii	Rroxscaffold_2G00150370 Rroxscaffold_7G00162110 Rroxscaffold_7G00162130
rosa_rugosa	Rorug02G0014600 Rorug06G0346400 Rorug06G0346600
rosa_samantha	Rh2AG060400 Rh2BG059100 Rh2CG060900 Rh2DG059700 Rh6AG103200 Rh6AG458200 Rh6AG458400 Rh6BG095600 Rh6BG442400 Rh6BG442500 Rh6BG442600 Rh6BG442700 Rh6CG092500 Rh6CG472700 Rh6CG472800 Rh6CG472900 Rh6DG086500 Rh6DG458800 Rh6DG459000 Rh6DG459100
rosa_wichuraiana	Rw2G004950 Rw6G008910 Rw6G039960 Rw6G039970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	540
AccB1I	GGYRCC	1 cut(s)	540
AccB7I	CCANNNNNTGG	1 cut(s)	569
AclWI	GGATC	1 cut(s)	320
AcoI	YGGCCR	1 cut(s)	879
AcsI	RAATTY	4 cut(s)	154, 473, 482, 962
AcuI	CTGAAG	1 cut(s)	600
AfaI	GTAC	3 cut(s)	94, 150, 542
AfiI	CCNNNNNNNGG	4 cut(s)	136, 137, 283, 569
AgsI	TTSAA	6 cut(s)	16, 182, 283, 487, 655, 772
AjnI	CCWGG	1 cut(s)	452
AleI	CACNNNNGTG	1 cut(s)	953
AluBI	AGCT	5 cut(s)	166, 192, 211, 821, 935
AluI	AGCT	5 cut(s)	166, 192, 211, 821, 935
Alw21I	GWGCWC	3 cut(s)	168, 303, 960
Alw26I	GTCTC	1 cut(s)	438
Alw44I	GTGCAC	1 cut(s)	299
AlwI	GGATC	1 cut(s)	320
AlwNI	CAGNNNCTG	2 cut(s)	503, 950
AoxI	GGCC	2 cut(s)	127, 879
ApaLI	GTGCAC	1 cut(s)	299
ApeKI	GCWGC	4 cut(s)	589, 812, 835, 932
ApoI	RAATTY	4 cut(s)	154, 473, 482, 962
Asp718I	GGTACC	1 cut(s)	540
AspLEI	GCGC	1 cut(s)	868
AspS9I	GGNCC	3 cut(s)	128, 410, 604
AsuC2I	CCSGG	1 cut(s)	883
AsuHPI	GGTGA	3 cut(s)	160, 298, 718
AvaII	GGWCC	2 cut(s)	410, 604
BaeGI	GKGCMC	1 cut(s)	303
BanI	GGYRCC	1 cut(s)	540
BanII	GRGCYC	2 cut(s)	168, 373
BbsI	GAAGAC	1 cut(s)	972
Bbv12I	GWGCWC	3 cut(s)	168, 303, 960
BbvI	GCAGC	4 cut(s)	601, 799, 847, 944
BccI	CCATC	3 cut(s)	13, 68, 401
BciT130I	CCWGG	1 cut(s)	454
BclI	TGATCA	1 cut(s)	202
BcnI	CCSGG	1 cut(s)	883
BcoDI	GTCTC	1 cut(s)	438
BfaI	CTAG	1 cut(s)	63
BfmI	CTRYAG	2 cut(s)	644, 813
BfoI	RGCGCY	1 cut(s)	869
BglII	AGATCT	1 cut(s)	555
BisI	GCNGC	4 cut(s)	590, 813, 836, 933
BlsI	GCNGC	4 cut(s)	591, 814, 837, 934
Bme1390I	CCNGG	2 cut(s)	454, 883
Bme18I	GGWCC	2 cut(s)	410, 604
BmgT120I	GGNCC	3 cut(s)	128, 410, 604
BmiI	GGNNCC	4 cut(s)	542, 605, 606, 892
BmrFI	CCNGG	2 cut(s)	454, 883
BmrI	ACTGGG	2 cut(s)	210, 557
BmsI	GCATC	1 cut(s)	932
BmuI	ACTGGG	2 cut(s)	210, 557
BpiI	GAAGAC	1 cut(s)	972
BpuMI	CCSGG	1 cut(s)	883
BsaJI	CCNNGG	2 cut(s)	453, 882
BsaWI	WCCGGW	1 cut(s)	547
Bsc4I	CCNNNNNNNGG	4 cut(s)	136, 137, 283, 569
Bse1I	ACTGG	2 cut(s)	216, 563
BseBI	CCWGG	1 cut(s)	454
BseDI	CCNNGG	2 cut(s)	453, 882
BseGI	GGATG	3 cut(s)	120, 412, 463
BseLI	CCNNNNNNNGG	4 cut(s)	136, 137, 283, 569
BseMII	CTCAG	2 cut(s)	374, 495
BseNI	ACTGG	2 cut(s)	216, 563
BseSI	GKGCMC	1 cut(s)	303
BseXI	GCAGC	4 cut(s)	601, 799, 847, 944
BsgI	GTGCAG	2 cut(s)	99, 734
BshFI	GGCC	2 cut(s)	129, 881
BshNI	GGYRCC	1 cut(s)	540
BsiHKAI	GWGCWC	3 cut(s)	168, 303, 960
BsiSI	CCGG	2 cut(s)	548, 882
BslFI	GGGAC	1 cut(s)	590
BslI	CCNNNNNNNGG	4 cut(s)	136, 137, 283, 569
BsmAI	GTCTC	1 cut(s)	438
BsmFI	GGGAC	1 cut(s)	590
BsnI	GGCC	2 cut(s)	129, 881
Bsp1286I	GDGCHC	4 cut(s)	168, 303, 373, 960
Bsp143I	GATC	3 cut(s)	202, 325, 555
BspANI	GGCC	2 cut(s)	129, 881
BspCNI	CTCAG	2 cut(s)	373, 496
BspLI	GGNNCC	4 cut(s)	542, 605, 606, 892
BspMAI	CTGCAG	1 cut(s)	817
BspPI	GGATC	1 cut(s)	320
BspT107I	GGYRCC	1 cut(s)	540
BsrI	ACTGG	2 cut(s)	216, 563
BssECI	CCNNGG	2 cut(s)	453, 882
BssMI	GATC	3 cut(s)	202, 325, 555
Bst2UI	CCWGG	1 cut(s)	454
Bst4CI	ACNGT	2 cut(s)	70, 952
Bst6I	CTCTTC	2 cut(s)	180, 546
BstAPI	GCANNNNNTGC	1 cut(s)	320
BstC8I	GCNNGC	1 cut(s)	190
BstDEI	CTNAG	2 cut(s)	360, 504
BstENI	CCTNNNNNAGG	1 cut(s)	281
BstF5I	GGATG	3 cut(s)	120, 412, 463
BstH2I	RGCGCY	1 cut(s)	869
BstHHI	GCGC	1 cut(s)	868
BstKTI	GATC	3 cut(s)	205, 328, 558
BstMAI	GTCTC	1 cut(s)	438
BstMBI	GATC	3 cut(s)	202, 325, 555
BstMWI	GCNNNNNNNGC	4 cut(s)	320, 818, 929, 941
BstNI	CCWGG	1 cut(s)	454
BstSCI	CCNGG	2 cut(s)	452, 881
BstSFI	CTRYAG	2 cut(s)	644, 813
BstSLI	GKGCMC	1 cut(s)	303
BstV1I	GCAGC	4 cut(s)	601, 799, 847, 944
BstV2I	GAAGAC	1 cut(s)	972
BstX2I	RGATCY	2 cut(s)	325, 555
BstYI	RGATCY	2 cut(s)	325, 555
BsuRI	GGCC	2 cut(s)	129, 881
BtsCI	GGATG	3 cut(s)	120, 412, 463
BtsI	GCAGTG	1 cut(s)	789
BtsIMutI	CAGTG	2 cut(s)	789, 948
Cac8I	GCNNGC	1 cut(s)	190
CaiI	CAGNNNCTG	2 cut(s)	503, 950
CfoI	GCGC	1 cut(s)	868
Cfr13I	GGNCC	3 cut(s)	128, 410, 604
Csp6I	GTAC	3 cut(s)	93, 149, 541
CspCI	CAANNNNNGTGG	4 cut(s)	177, 212, 778, 813
CviAII	CATG	2 cut(s)	97, 802
CviQI	GTAC	3 cut(s)	93, 149, 541
DdeI	CTNAG	2 cut(s)	360, 504
DpnI	GATC	3 cut(s)	204, 327, 557
DpnII	GATC	3 cut(s)	202, 325, 555
EaeI	YGGCCR	1 cut(s)	879
Eam1104I	CTCTTC	2 cut(s)	180, 546
EarI	CTCTTC	2 cut(s)	180, 546
Ecl136II	GAGCTC	1 cut(s)	166
Eco24I	GRGCYC	2 cut(s)	168, 373
Eco47I	GGWCC	2 cut(s)	410, 604
Eco53kI	GAGCTC	1 cut(s)	166
Eco57I	CTGAAG	1 cut(s)	600
EcoICRI	GAGCTC	1 cut(s)	166
EcoNI	CCTNNNNNAGG	1 cut(s)	281
EcoO109I	RGGNCCY	1 cut(s)	604
EcoRI	GAATTC	1 cut(s)	482
EcoRII	CCWGG	1 cut(s)	452
EcoT38I	GRGCYC	2 cut(s)	168, 373
FaeI	CATG	2 cut(s)	100, 805
FalI	AAGNNNNNCTT	2 cut(s)	833, 865
FaqI	GGGAC	1 cut(s)	590
FatI	CATG	2 cut(s)	96, 801
FbaI	TGATCA	1 cut(s)	202
Fnu4HI	GCNGC	4 cut(s)	590, 813, 836, 933
FokI	GGATG	3 cut(s)	127, 419, 470
FriOI	GRGCYC	2 cut(s)	168, 373
Fsp4HI	GCNGC	4 cut(s)	590, 813, 836, 933
FspBI	CTAG	1 cut(s)	63
GlaI	GCGC	1 cut(s)	867
GluI	GCNGC	4 cut(s)	590, 813, 836, 933
HaeII	RGCGCY	1 cut(s)	869
HaeIII	GGCC	2 cut(s)	129, 881
HapII	CCGG	2 cut(s)	548, 882
HhaI	GCGC	1 cut(s)	868
Hin1II	CATG	2 cut(s)	100, 805
Hin6I	GCGC	1 cut(s)	866
HinP1I	GCGC	1 cut(s)	866
HincII	GTYRAC	1 cut(s)	745
HindII	GTYRAC	1 cut(s)	745
HindIII	AAGCTT	2 cut(s)	190, 209
HinfI	GANTC	2 cut(s)	246, 434
HpaII	CCGG	2 cut(s)	548, 882
HphI	GGTGA	3 cut(s)	160, 298, 718
Hpy166II	GTNNAC	4 cut(s)	301, 613, 686, 745
Hpy188I	TCNGA	6 cut(s)	207, 251, 443, 481, 528, 874
Hpy188III	TCNNGA	4 cut(s)	231, 413, 578, 769
Hpy8I	GTNNAC	4 cut(s)	301, 613, 686, 745
HpyAV	CCTTC	3 cut(s)	231, 859, 928
HpyCH4III	ACNGT	2 cut(s)	70, 952
HpyF10VI	GCNNNNNNNGC	4 cut(s)	320, 818, 929, 941
HpyF3I	CTNAG	2 cut(s)	360, 504
Hsp92II	CATG	2 cut(s)	100, 805
HspAI	GCGC	1 cut(s)	866
KflI	GGGWCCC	1 cut(s)	604
KpnI	GGTACC	1 cut(s)	544
Ksp22I	TGATCA	1 cut(s)	202
Kzo9I	GATC	3 cut(s)	202, 325, 555
Lsp1109I	GCAGC	4 cut(s)	601, 799, 847, 944
LweI	GCATC	1 cut(s)	932
MaeI	CTAG	1 cut(s)	63
MaeIII	GTNAC	3 cut(s)	349, 464, 946
MalI	GATC	3 cut(s)	204, 327, 557
MboI	GATC	3 cut(s)	202, 325, 555
MboII	GAAGA	7 cut(s)	28, 167, 170, 246, 550, 563, 972
MfeI	CAATTG	1 cut(s)	795
MflI	RGATCY	2 cut(s)	325, 555
MhlI	GDGCHC	4 cut(s)	168, 303, 373, 960
MlyI	GAGTC	1 cut(s)	443
MnlI	CCTC	9 cut(s)	183, 339, 369, 390, 655, 711, 881, 904, 922
MseI	TTAA	1 cut(s)	783
MslI	CAYNNNNRTG	1 cut(s)	953
MspI	CCGG	2 cut(s)	548, 882
MspR9I	CCNGG	2 cut(s)	454, 883
MunI	CAATTG	1 cut(s)	795
MvaI	CCWGG	1 cut(s)	454
MwoI	GCNNNNNNNGC	4 cut(s)	320, 818, 929, 941
NciI	CCSGG	1 cut(s)	883
NdeII	GATC	3 cut(s)	202, 325, 555
NlaIII	CATG	2 cut(s)	100, 805
NlaIV	GGNNCC	4 cut(s)	542, 605, 606, 892
NmuCI	GTSAC	2 cut(s)	349, 946
OliI	CACNNNNGTG	1 cut(s)	953
PfeI	GAWTC	1 cut(s)	246
PflMI	CCANNNNNTGG	1 cut(s)	569
PkrI	GCNGC	4 cut(s)	591, 814, 837, 934
PleI	GAGTC	1 cut(s)	442
PpsI	GAGTC	1 cut(s)	442
PpuMI	RGGWCCY	1 cut(s)	604
Psp124BI	GAGCTC	1 cut(s)	168
Psp5II	RGGWCCY	1 cut(s)	604
Psp6I	CCWGG	1 cut(s)	452
PspGI	CCWGG	1 cut(s)	452
PspN4I	GGNNCC	4 cut(s)	542, 605, 606, 892
PspPI	GGNCC	3 cut(s)	128, 410, 604
PspPPI	RGGWCCY	1 cut(s)	604
PstI	CTGCAG	1 cut(s)	817
PstNI	CAGNNNCTG	2 cut(s)	503, 950
PsuI	RGATCY	2 cut(s)	325, 555
RsaI	GTAC	3 cut(s)	94, 150, 542
RsaNI	GTAC	3 cut(s)	93, 149, 541
RseI	CAYNNNNRTG	1 cut(s)	953
SacI	GAGCTC	1 cut(s)	168
SaqAI	TTAA	1 cut(s)	783
SatI	GCNGC	4 cut(s)	590, 813, 836, 933
Sau3AI	GATC	3 cut(s)	202, 325, 555
Sau96I	GGNCC	3 cut(s)	128, 410, 604
SchI	GAGTC	1 cut(s)	443
ScrFI	CCNGG	2 cut(s)	454, 883
SduI	GDGCHC	4 cut(s)	168, 303, 373, 960
SfaNI	GCATC	1 cut(s)	932
SfcI	CTRYAG	2 cut(s)	644, 813
SinI	GGWCC	2 cut(s)	410, 604
SmiMI	CAYNNNNRTG	1 cut(s)	953
SspI	AATATT	1 cut(s)	623
SspMI	CTAG	1 cut(s)	63
SstI	GAGCTC	1 cut(s)	168
StyD4I	CCNGG	2 cut(s)	452, 881
TaaI	ACNGT	2 cut(s)	70, 952
TaqI	TCGA	2 cut(s)	244, 902
TfiI	GAWTC	1 cut(s)	246
Tru1I	TTAA	1 cut(s)	783
Tru9I	TTAA	1 cut(s)	783
TscAI	CASTG	2 cut(s)	796, 955
TseFI	GTSAC	2 cut(s)	349, 946
TseI	GCWGC	4 cut(s)	589, 812, 835, 932
Tsp45I	GTSAC	2 cut(s)	349, 946
TspDTI	ATGAA	5 cut(s)	113, 131, 841, 921, 955
TspRI	CASTG	2 cut(s)	796, 955
Van91I	CCANNNNNTGG	1 cut(s)	569
VneI	GTGCAC	1 cut(s)	299
VpaK11BI	GGWCC	2 cut(s)	410, 604
XagI	CCTNNNNNAGG	1 cut(s)	281
XapI	RAATTY	4 cut(s)	154, 473, 482, 962
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.